mRNA_13626 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175916
Unique NamemRNA_13626
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A836CLX5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX5_9STRA)

HSP 1 Score: 376 bits (966), Expect = 4.340e-132
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1
Query:    1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTVSAVGPHH 558
            MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTVSAVGPHH
Sbjct:    1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTVSAVGPHH 186          
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A7S2D2G9_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2D2G9_9STRA)

HSP 1 Score: 170 bits (430), Expect = 1.490e-45
Identity = 83/168 (49.40%), Postives = 113/168 (67.26%), Query Frame = 1
Query:   10 YASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRP--EAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLE 507
            Y   D A   LP +  +WAPHG+L++PTL E GA+G F LEVHSD P+    LP+  SR LA EW E ++GG+H+H ++W++NP + LRL     ++V+I+LSRP   A W+A    DSVG M+GFY++ G  P R    V H+GKPW E+PFVP + V+TP+ FVLE
Sbjct:  737 YKRSDVAMLMLPNVSVNWAPHGLLLIPTLSEIGAKGQFVLEVHSDYPVVVESLPDTKSRTLAGEWTESNSGGSHMH-QSWKKNPLYHLRLLGNKRSKVKISLSRPAGNASWKAQTGKDSVGSMIGFYLVQGPAPTRDAAEVYHDGKPWSETPFVPMNSVSTPSNFVLE 903          
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: D8LK55_ECTSI (Calpain_III domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK55_ECTSI)

HSP 1 Score: 154 bits (389), Expect = 4.700e-44
Identity = 81/179 (45.25%), Postives = 112/179 (62.57%), Query Frame = 1
Query:    1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTV 537
            MS Y S +A+   L +LRRD+ P+G+ +V                         ELPE TSR +AAEW   +AGG+H+H + W +NP F L+LR  G  +VRI+LSRPE +W+  C  DSVGCMMGFY++ G++P R   A+ HEG+P++ SP VPTH V+TP GF+L++   DD FT+
Sbjct:    1 MSDYRSTEASTLMLKSLRRDFMPNGLFLV------------------------EELPETTSRTIAAEWGTQTAGGSHIHPD-WTKNPCFHLKLRTTGPTKVRISLSRPEKDWKNKCIRDSVGCMMGFYLMSGSKPNRNQ-AIFHEGRPYEGSPMVPTHEVSTPPGFMLDNTSEDDIFTI 153          
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A7S1U0F0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0F0_9STRA)

HSP 1 Score: 156 bits (395), Expect = 8.160e-41
Identity = 78/156 (50.00%), Postives = 101/156 (64.74%), Query Frame = 1
Query:   73 GVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAV-LHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAFTV 537
            G++V P L  RG +G + LEVHS LPL    L +   + LA EWAEGSAGG+H+H ++W++NP FQLRL   G A+V++ LSRPE  W      ++VG MMGFY+  G RP R  GAV L  GKPW +S FVP+  V TP  F+LE    DD +T+
Sbjct:  798 GLIVSPCLSSRGTKGTYVLEVHSSLPLRIEGLTDGADKTLAGEWAEGSAGGSHIHTDSWKKNPKFQLRLNSTGPAQVKVRLSRPEDYWAPKMLRNAVGAMMGFYIYQGQRPNR--GAVTLVNGKPWSDSAFVPSLDVCTPQNFILEPLPDDDFYTI 951          
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A6H5KJK2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJK2_9PHAE)

HSP 1 Score: 137 bits (344), Expect = 3.550e-38
Identity = 63/118 (53.39%), Postives = 88/118 (74.58%), Query Frame = 1
Query:   82 VVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHE 435
            +VPTL E+G +GA++LE+HSD  ++  ELPE TSR +AAEW   +AGG+H+H + W++NP F L+LR  G  +VRI+LSRPE +W+  C  DSVGCMMGFY++ G++P R   A+ HE
Sbjct:    1 MVPTLSEKGVKGAYSLEIHSDHAVEVEELPETTSRTIAAEWGTQTAGGSHIHPD-WKKNPCFHLKLRTTGPTKVRISLSRPEKDWKNKCIRDSVGCMMGFYLMSGSKPNRNQ-AIFHE 116          
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A7S2HTQ9_9STRA (Hypothetical protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HTQ9_9STRA)

HSP 1 Score: 147 bits (371), Expect = 1.380e-37
Identity = 76/177 (42.94%), Postives = 112/177 (63.28%), Query Frame = 1
Query:    1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWDESPFVPTHCVATPAGFVLESAGPDDAF 531
            M+SY S   A   LP L   WAP GV+VVP++ E GA G F+L+V SD  +    +P   S A++ +WAEG+AGG H+H+ TW++NP + +R      ARV+I L R   +W+   +   VG M+G YV+ G RP R   +V+HEG+PW E+ F+P + V+TP  FVL+++  DD++
Sbjct:  806 MTSYTSGTVAPMKLPDLSPSWAPEGVMVVPSISEAGATGQFSLQVFSDRDITVECVPPLRSTAISGKWAEGTAGGCHMHS-TWQKNPIYHIRFSRKVRARVKITLFRNTVDWKEQLKKGGVGTMLGLYVVRGKRPNRDCPSVMHEGQPWSETSFLPMNEVSTPPQFVLDNS--DDSY 979          
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A8K1FRV3_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FRV3_PYTOL)

HSP 1 Score: 138 bits (347), Expect = 2.330e-34
Identity = 76/191 (39.79%), Postives = 109/191 (57.07%), Query Frame = 1
Query:    1 MSSYASPDAAAAALPALRRDWAPH---GVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRA-----------------PGAVLHEGKPWDESPFVPTHCVATPAGFVLESA 513
            +S Y+SP  A   L  L ++W      G++++PTLGE  A G F ++V  D PL   ELP+ T+++L  EW E +  G HL+A+ W++NP F L L+    A+V+I L+R E EW+  C+ D+VG M+GFYV HG R VRA                 P  ++  G+PW E+ FVP H V +P   +L SA
Sbjct:  845 ISDYSSPIVACMYLRKLPKEWLLEDQGGLMIIPTLGEVNAEGTFDIQVDPDFPLLLDELPKFTTQSLPGEWTEATGVGCHLYAD-WKKNPKFYLHLKAVRPAKVKITLTRSELEWKGKCKRDAVGTMLGFYVFHGQRLVRAGEAHHNNNNGPGNAPTLPHNIIVNGRPWSETDFVPLHSVTSPPELILPSA 1034          
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: D0ND88_PHYIT (Calpain catalytic domain-containing protein n=11 Tax=Phytophthora TaxID=4783 RepID=D0ND88_PHYIT)

HSP 1 Score: 108 bits (271), Expect = 3.650e-24
Identity = 73/193 (37.82%), Postives = 100/193 (51.81%), Query Frame = 1
Query:    1 MSSYASPDAAAAALPALRRDW-----APH--------GVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAARVRIALSRPEAEWRAACQADSVGCMMGFYVLHG-----TRPVRAPGA----VLHEGKPWDESPFVPTHCVATPAGFVLESA 513
            +SSYASP +A   L  + ++W     +P         G+L+VPTLGE GA G+F L+V  D PL   ELP+              AG           NP F L+++     +VRI L+R E EW++ CQ DSVG M+GFY+L G      RP    GA    ++  G+PW E+ FVP H V++P   VL +A
Sbjct:  859 LSSYASPASACLFLRKVPKEWLLASDSPSSVNSSGGGGLLLVPTLGEAGAEGSFELQVDCDFPLLVDELPK-------------GAGA----------NPKFYLQIQGVRPTKVRITLTRSEREWKSRCQRDSVGTMIGFYLLRGGSSKLVRPAEEGGANSNPIVINGRPWSETDFVPLHAVSSPPDLVLSAA 1028          
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Match: A0A7S1C892_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1C892_9STRA)

HSP 1 Score: 100 bits (248), Expect = 4.280e-21
Identity = 62/161 (38.51%), Postives = 92/161 (57.14%), Query Frame = 1
Query:    1 MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLPLDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAAR-VRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKP--WDESPFVPTH 474
            ++SY +    A  L  +  DW   G+LV P +   G  G F L++ S+  L  +EL +  SR +   W++ +A G HLH E W+RNPAFQ+ L+D   A   +I LSRPE  W+A  +ADSVGCM+GFY++   R      +  ++G+   + E+ FVP H
Sbjct:  705 LTSYYTDAKVATTLLKVPADWLRDGLLVHPAMKLPGREGEFTLQLFSETQLMMQELSQGHSRTVTGSWSDKNAMGCHLHPE-WKRNPAFQIVLQDRPVAMDCKITLSRPEDRWKAMARADSVGCMIGFYLVTCDRER---DSKFNDGRKDFFQETSFVPMH 861          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175916 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A836CLX5_9STRA4.340e-132100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2D2G9_9STRA1.490e-4549.40Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
D8LK55_ECTSI4.700e-4445.25Calpain_III domain-containing protein n=1 Tax=Ecto... [more]
A0A7S1U0F0_9STRA8.160e-4150.00Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6H5KJK2_9PHAE3.550e-3853.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2HTQ9_9STRA1.380e-3742.94Hypothetical protein n=2 Tax=Dictyocha speculum Ta... [more]
A0A8K1FRV3_PYTOL2.330e-3439.79Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
D0ND88_PHYIT3.650e-2437.82Calpain catalytic domain-containing protein n=11 T... [more]
A0A7S1C892_9STRA4.280e-2138.51Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_131contigContig_131:229824..230924 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175916|e_gw1.131.9.1
Descriptionprotein). Source PGD
COG categoryO
Max annot lvl121069|Pythiales
EggNOG OGsKOG0045@1|root,KOG0045@2759|Eukaryota,1MEX0@121069|Pythiales
Evalue5.05e-37
Seed ortholog36331.EPrPI00000013534
Hectar predicted targeting categoryother localisation
TranscriptId176238
TrackFilteredModels1
ProteinId175916
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175916gene_13626Tribonema minus UTEX_B_3156 geneContig_131 229824..230924 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175916Trimin1|175916|e_gw1.131.9.1Tribonema minus UTEX_B_3156 polypeptideContig_131 229824..230924 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13626_2exon_13626_2Tribonema minus UTEX_B_3156 exonContig_131 229824..230095 -
exon_13626_1exon_13626_1Tribonema minus UTEX_B_3156 exonContig_131 230636..230924 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13626CDS_13626Tribonema minus UTEX_B_3156 CDSContig_131 230636..230924 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13626 ID=mRNA_13626|Name=jgi.p|Trimin1|175916|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=561bp|location=Sequence derived from alignment at Contig_131:229824..230924- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCTCCTACGCGTCCCCCGACGCCGCGGCGGCCGCGCTCCCCGCGCT
GCGCCGCGACTGGGCGCCGCACGGCGTCCTCGTCGTGCCGACGCTCGGCG
AGCGCGGCGCGCGCGGCGCGTTCGCGCTCGAGGTGCACAGCGACCTGCCG
CTCGACGCGCGCGAGCTGCCGGAGGCGACGTCGCGCGCGCTCGCGGCGGA
GTGGGCGGAGGGCAGCGCCGGCGGCGCGCACCTGCACGCCGAGACGTGGC
GCCGCAACCCGGCGTTCCAGCTGCGGCTGCGCGACGCGGGCGCGGCGCGC
GTGCGCATCGCCCTCAGCCGCCCCGAGGCGGAGTGGCGCGCGGCGTGCCA
GGCGGACTCCGTCGGCTGCATGATGGGCTTCTACGTGCTGCACGGGACGC
GCCCCGTGCGCGCGCCCGGCGCCGTGCTGCACGAAGGCAAGCCGTGGGAC
GAGTCACCGTTCGTGCCGACGCACTGCGTCGCGACACCCGCGGGGTTCGT
GCTGGAGAGCGCCGGGCCGGACGACGCCTTCACGGTGAGCGCTGTCGGCC
CGCATCACTGA
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protein sequence of jgi.p|Trimin1|175916

>Trimin1|175916|e_gw1.131.9.1 ID=Trimin1|175916|e_gw1.131.9.1|Name=jgi.p|Trimin1|175916|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=187bp
MSSYASPDAAAAALPALRRDWAPHGVLVVPTLGERGARGAFALEVHSDLP
LDARELPEATSRALAAEWAEGSAGGAHLHAETWRRNPAFQLRLRDAGAAR
VRIALSRPEAEWRAACQADSVGCMMGFYVLHGTRPVRAPGAVLHEGKPWD
ESPFVPTHCVATPAGFVLESAGPDDAFTVSAVGPHH*
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mRNA from alignment at Contig_131:229824..230924-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13626 ID=mRNA_13626|Name=jgi.p|Trimin1|175916|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1101bp|location=Sequence derived from alignment at Contig_131:229824..230924- (Tribonema minus UTEX_B_3156 )
ATGTCCTCCTACGCGTCCCCCGACGCCGCGGCGGCCGCGCTCCCCGCGCT GCGCCGCGACTGGGCGCCGCACGGCGTCCTCGTCGTGCCGACGCTCGGCG AGCGCGGCGCGCGCGGCGCGTTCGCGCTCGAGGTGCACAGCGACCTGCCG CTCGACGCGCGCGAGCTGCCGGAGGCGACGTCGCGCGCGCTCGCGGCGGA GTGGGCGGAGGGCAGCGCCGGCGGCGCGCACCTGCACGCCGAGACGTGGC GCCGCAACCCGGCGTTCCAGCTGCGGCTGCGCGACGCGGGTGGGTGTCGG GTCCGGCGGTGCTGAGCACTGATGAGTTCCCACCGCACGTAACTGTAGAC TGACTTCGGGACGGCGTGTGTTGACGATGCCAAGAAAGCGCTGCGGCTGT GCGAGGCGCTTGCGGCGCGTGCCCTGCAAAGTGGTCGGGACGTGCTGCGA GCGTGGCCGTTGCTGCACGACGGAGAGGGCGCGTTACAGCACGCTAGAGT TTACTTGCTTGCTCACTCACTCACTCACTCACTCACTCAGTTTTATGCTT TCCCAGGCGCGATGCGCGTGCGCGTCGCCCTCAGCCGCCCGGAGGCGCAG TGGAGCATGCCAGAGTGTGGGTCTCCACTAGCTCACTTACTCACTCACCC ACTCACTCGCTCACTCGCCCCCACCCCCCCCCCCCAGGCGCGGCGCGCGT GCGCATCGCCCTCAGCCGCCCCCGAGGCAGAGTCGCGCGCCGCATGCCAG AGTACGACTCTGCAGCAACTGCGCGCTGACTCACTTAGTCACTCACTCAC TCACCCACTCACTCCCCCCCTCCCGCCAGGCGCGGCGCGCGTGCGCATCG CCCTCAGCCGCCCCGAGGCGGAGTGGCGCGCGGCGTGCCAGGCGGACTCC GTCGGCTGCATGATGGGCTTCTACGTGCTGCACGGGACGCGCCCCGTGCG CGCGCCCGGCGCCGTGCTGCACGAAGGCAAGCCGTGGGACGAGTCACCGT TCGTGCCGACGCACTGCGTCGCGACACCCGCGGGGTTCGTGCTGGAGAGC GCCGGGCCGGACGACGCCTTCACGGTGAGCGCTGTCGGCCCGCATCACTG A
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Coding sequence (CDS) from alignment at Contig_131:229824..230924-

>mRNA_13626 ID=mRNA_13626|Name=jgi.p|Trimin1|175916|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=561bp|location=Sequence derived from alignment at Contig_131:229824..230924- (Tribonema minus UTEX_B_3156 )
ATGTCCTCCTACGCGTCCCCCGACGCCGCGGCGGCCGCGCTCCCCGCGCT
GCGCCGCGACTGGGCGCCGCACGGCGTCCTCGTCGTGCCGACGCTCGGCG
AGCGCGGCGCGCGCGGCGCGTTCGCGCTCGAGGTGCACAGCGACCTGCCG
CTCGACGCGCGCGAGCTGCCGGAGGCGACGTCGCGCGCGCTCGCGGCGGA
GTGGGCGGAGGGCAGCGCCGGCGGCGCGCACCTGCACGCCGAGACGTGGC
GCCGCAACCCGGCGTTCCAGCTGCGGCTGCGCGACGCGGGCGCGGCGCGC
GTGCGCATCGCCCTCAGCCGCCCCGAGGCGGAGTGGCGCGCGGCGTGCCA
GGCGGACTCCGTCGGCTGCATGATGGGCTTCTACGTGCTGCACGGGACGC
GCCCCGTGCGCGCGCCCGGCGCCGTGCTGCACGAAGGCAAGCCGTGGGAC
GAGTCACCGTTCGTGCCGACGCACTGCGTCGCGACACCCGCGGGGTTCGT
GCTGGAGAGCGCCGGGCCGGACGACGCCTTCACGGTGAGCGCTGTCGGCC
CGCATCACTGA
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