mRNA_9835 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352707 vs. uniprot
Match: A0A835ZB08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB08_9STRA) HSP 1 Score: 1096 bits (2834), Expect = 0.000e+0 Identity = 603/603 (100.00%), Postives = 603/603 (100.00%), Query Frame = 1
Query: 1 MGAAMRRKRRQQQSLWGFSSTTAAVARVLHEDAFSPVLEYLTTSDALRMACTSKHFYTKLPALLSTMDINADALTCAGLRRFTNVRQVTVRATAAAGRKGALRELLACLPSLEALYVGTDAVDEVLGALDASVHGRHLRSLCITPGTAGGSSLAASSQKASWASQLMSLFATCAWPALKHLQLAGDWFEEQCLQFLLLLLSRHGIMQHLEALELCLPVQTPMLAFAGGAHGNGTKLTSTLGRVLCACGGGAHLKTLRLHNVELQHSIGTQSFIDALGSPCTPVLEELDLSSCTTDSLTVSVLADALARARSLRRVSLSLAGVRGSGGSHTSNNSGVSELAAVFSNVPHMRQLQQLSLSHCHGVPAAALLSLVMSLASAPLPHLRALTISDSCMDAETAQALTQLVSGCPRLQRLNLARNAIADSAAMHAAAAARRCXXXXXXXXXXXXXXXXXXAIGLVALLHRATRPLVLDFAGGVVGMAPSWALFPSPSCVRSIIQLLRGTHNAHFTVTLSRAALAGATGAIVMGAGGVSLEYSVPRKVAPADCLRRLGFTPAAVLTDAAGGRSASGSSPASGSLGLGWSNSDSIASLGYEGNTVTMTWYQ 1809
MGAAMRRKRRQQQSLWGFSSTTAAVARVLHEDAFSPVLEYLTTSDALRMACTSKHFYTKLPALLSTMDINADALTCAGLRRFTNVRQVTVRATAAAGRKGALRELLACLPSLEALYVGTDAVDEVLGALDASVHGRHLRSLCITPGTAGGSSLAASSQKASWASQLMSLFATCAWPALKHLQLAGDWFEEQCLQFLLLLLSRHGIMQHLEALELCLPVQTPMLAFAGGAHGNGTKLTSTLGRVLCACGGGAHLKTLRLHNVELQHSIGTQSFIDALGSPCTPVLEELDLSSCTTDSLTVSVLADALARARSLRRVSLSLAGVRGSGGSHTSNNSGVSELAAVFSNVPHMRQLQQLSLSHCHGVPAAALLSLVMSLASAPLPHLRALTISDSCMDAETAQALTQLVSGCPRLQRLNLARNAIADSAAMHAAAAARRCXXXXXXXXXXXXXXXXXXAIGLVALLHRATRPLVLDFAGGVVGMAPSWALFPSPSCVRSIIQLLRGTHNAHFTVTLSRAALAGATGAIVMGAGGVSLEYSVPRKVAPADCLRRLGFTPAAVLTDAAGGRSASGSSPASGSLGLGWSNSDSIASLGYEGNTVTMTWYQ
Sbjct: 1 MGAAMRRKRRQQQSLWGFSSTTAAVARVLHEDAFSPVLEYLTTSDALRMACTSKHFYTKLPALLSTMDINADALTCAGLRRFTNVRQVTVRATAAAGRKGALRELLACLPSLEALYVGTDAVDEVLGALDASVHGRHLRSLCITPGTAGGSSLAASSQKASWASQLMSLFATCAWPALKHLQLAGDWFEEQCLQFLLLLLSRHGIMQHLEALELCLPVQTPMLAFAGGAHGNGTKLTSTLGRVLCACGGGAHLKTLRLHNVELQHSIGTQSFIDALGSPCTPVLEELDLSSCTTDSLTVSVLADALARARSLRRVSLSLAGVRGSGGSHTSNNSGVSELAAVFSNVPHMRQLQQLSLSHCHGVPAAALLSLVMSLASAPLPHLRALTISDSCMDAETAQALTQLVSGCPRLQRLNLARNAIADSAAMHAAAAARRCXXXXXXXXXXXXXXXXXXAIGLVALLHRATRPLVLDFAGGVVGMAPSWALFPSPSCVRSIIQLLRGTHNAHFTVTLSRAALAGATGAIVMGAGGVSLEYSVPRKVAPADCLRRLGFTPAAVLTDAAGGRSASGSSPASGSLGLGWSNSDSIASLGYEGNTVTMTWYQ 603
BLAST of jgi.p|Trimin1|352707 vs. uniprot
Match: A0A836CPI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPI9_9STRA) HSP 1 Score: 279 bits (714), Expect = 3.580e-81 Identity = 209/553 (37.79%), Postives = 305/553 (55.15%), Query Frame = 1
Query: 70 AVARVLHEDAFSPVLEYLTTSDALRMACTSKHFYTKLPALLSTMDINADALTCAGL---RRFTNVRQVTV---RATAAA------GRKGALRELLACLPSLEALYVGTDAVDEVLGALDASVHGRHLRSLCITPGTAGGSSLAASSQKASWASQLMSLFATCAWPALKHLQLAGDWFEEQCLQFLLLLLSRHGIMQHLEALELCLPVQTPM-LAFAGGAHGNGTKLTSTLGRVLCACGGGAHLKTLRLHNVELQHSIGTQSFIDALGSPCTPVLEELDLSSCTTDSLTVSVLADALARARSLRRVSLSLAGVRGSGGSHTSNNSGVSELAAVFSNVPHMRQLQQLSLSHCHGVPAAALLSLVMSLASAPLPHLRALTISDSCMDAETAQALTQLVSGCPRLQRLNLARNAIADSAAMHAAAAARRCXXXXXXXXXXXXXXXXXXAIGLVALLHRATRPLVLDFAGGVVG-------MAPSWALFPSPSCVRSIIQLLRGTHNAHFTVTLSRAALAGATGAIVMGAGG-VSLEYSVPRKVAPADCLRRLGFTPA 1665
AV EDAF+ VL +L T +A+R+A T +H +PA +S++ + + T G RR NVR +T R +AAA G AL +LL LPSLE +++ D++D L AL ++ ++ L ++ + SSL + Q+ +WA QL++LF++ W +L LQL GDWF++ CLQ L+ LL+ G++++LE L LCLP QT L AG G L LG L G GA L+ L + N+ L Q F AL TP+L +L L +C + S LA +AR +RR+ L G+ G+G S T + + +LAA PH+ L+ L+L++ H A L+L +LA+APLP L LTI+ + + A+ A ++ +V+ P L++L+L A+ D AA++ AAAA A+G+V LL R + LV+DF G ALFPSP CVRSI++L+R +N +F V LSRAA+AGATG+IVM + G V+LEY +PRK+A A+ L G A
Sbjct: 39 AVGLSSQEDAFAVVLGFLGTPEAMRLAATCRHLCRVVPAAVSSICV-CNLTTFRGAPAWRRLVNVRTLTASAGRTSAAAAAHNDTGHNAALGQLLLSLPSLEEVHITNDSIDGTLWALHEALVTDQVKVLSLSTASGAPSSLCSYEQRRAWAGQLLALFSSRPWTSLTSLQLQGDWFDQLCLQDLIHLLAVTGVLRNLETLTLCLPPQTAAGLGEAGTMEG--VDLAGALGAALSTSGNGARLRQLSVANLCLATDSAAQLFA-ALNKLHTPLLTDLALENCPLGAAAASALAAVIARTPRMRRIEACLGGL-GAGASDTCS---LLDLAAALRAGPHLASLETLALTNGHSAAPEATLALAAALAAAPLPRLARLTIASTLLAADAAHQVSLIVAHAPALRQLDLPHCALGDRAALYVAAAAWHRCPRLARLRVGGNRITELGAMGVVGLLRRCRQRLVVDFTSGAAAPLGXXXXXXXXXALFPSPPCVRSIVELVRSGNNPNFFVLLSRAAVAGATGSIVMSSTGQVALEYCIPRKLAAANRLVSPGLADA 583 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352707 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_9835 ID=mRNA_9835|Name=jgi.p|Trimin1|352707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1965bp|location=Sequence derived from alignment at Contig_129:167266..169230+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGGGAGCCGCCATGAGGCGCAAGCGGCGCCAGCAGCAGAGTCTCTGGGGback to top protein sequence of jgi.p|Trimin1|352707 >Trimin1|352707|estExt_Genemark1.C_Ctg_1290018 ID=Trimin1|352707|estExt_Genemark1.C_Ctg_1290018|Name=jgi.p|Trimin1|352707|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=604bp MGAAMRRKRRQQQSLWGFSSTTAAVARVLHEDAFSPVLEYLTTSDALRMAback to top mRNA from alignment at Contig_129:167266..169230+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_9835 ID=mRNA_9835|Name=jgi.p|Trimin1|352707|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1965bp|location=Sequence derived from alignment at Contig_129:167266..169230+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_129:167266..169230+ >mRNA_9835 ID=mRNA_9835|Name=jgi.p|Trimin1|352707|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1812bp|location=Sequence derived from alignment at Contig_129:167266..169230+ (Tribonema minus UTEX_B_3156 )back to top |