Trimin1|352707|estExt_Genemark1.C_Ctg_1290018 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|352707
Unique Name	Trimin1\|352707\|estExt_Genemark1.C_Ctg_1290018
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	604

Homology

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BLAST of jgi.p|Trimin1|352707 vs. uniprot
Match: A0A835ZB08_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZB08_9STRA)

HSP 1 Score: 1095 bits (2833), Expect = 0.000e+0
Identity = 603/603 (100.00%), Postives = 603/603 (100.00%), Query Frame = 0

Query:    1 MGAAMRRKRRQQQSLWGFSSTTAAVARVLHEDAFSPVLEYLTTSDALRMACTSKHFYTKLPALLSTMDINADALTCAGLRRFTNVRQVTVRATAAAGRKGALRELLACLPSLEALYVGTDAVDEVLGALDASVHGRHLRSLCITPGTAGGSSLAASSQKASWASQLMSLFATCAWPALKHLQLAGDWFEEQCLQFLLLLLSRHGIMQHLEALELCLPVQTPMLAFAGGAHGNGTKLTSTLGRVLCACGGGAHLKTLRLHNVELQHSIGTQSFIDALGSPCTPVLEELDLSSCTTDSLTVSVLADALARARSLRRVSLSLAGVRGSGGSHTSNNSGVSELAAVFSNVPHMRQLQQLSLSHCHGVPAAALLSLVMSLASAPLPHLRALTISDSCMDAETAQALTQLVSGCPRLQRLNLARNAIADSAAMHAAAAARRCXXXXXXXXXXXXXXXXXXAIGLVALLHRATRPLVLDFAGGVVGMAPSWALFPSPSCVRSIIQLLRGTHNAHFTVTLSRAALAGATGAIVMGAGGVSLEYSVPRKVAPADCLRRLGFTPAAVLTDAAGGRSASGSSPASGSLGLGWSNSDSIASLGYEGNTVTMTWYQ 603
            MGAAMRRKRRQQQSLWGFSSTTAAVARVLHEDAFSPVLEYLTTSDALRMACTSKHFYTKLPALLSTMDINADALTCAGLRRFTNVRQVTVRATAAAGRKGALRELLACLPSLEALYVGTDAVDEVLGALDASVHGRHLRSLCITPGTAGGSSLAASSQKASWASQLMSLFATCAWPALKHLQLAGDWFEEQCLQFLLLLLSRHGIMQHLEALELCLPVQTPMLAFAGGAHGNGTKLTSTLGRVLCACGGGAHLKTLRLHNVELQHSIGTQSFIDALGSPCTPVLEELDLSSCTTDSLTVSVLADALARARSLRRVSLSLAGVRGSGGSHTSNNSGVSELAAVFSNVPHMRQLQQLSLSHCHGVPAAALLSLVMSLASAPLPHLRALTISDSCMDAETAQALTQLVSGCPRLQRLNLARNAIADSAAMHAAAAARRCXXXXXXXXXXXXXXXXXXAIGLVALLHRATRPLVLDFAGGVVGMAPSWALFPSPSCVRSIIQLLRGTHNAHFTVTLSRAALAGATGAIVMGAGGVSLEYSVPRKVAPADCLRRLGFTPAAVLTDAAGGRSASGSSPASGSLGLGWSNSDSIASLGYEGNTVTMTWYQ
Sbjct:    1 MGAAMRRKRRQQQSLWGFSSTTAAVARVLHEDAFSPVLEYLTTSDALRMACTSKHFYTKLPALLSTMDINADALTCAGLRRFTNVRQVTVRATAAAGRKGALRELLACLPSLEALYVGTDAVDEVLGALDASVHGRHLRSLCITPGTAGGSSLAASSQKASWASQLMSLFATCAWPALKHLQLAGDWFEEQCLQFLLLLLSRHGIMQHLEALELCLPVQTPMLAFAGGAHGNGTKLTSTLGRVLCACGGGAHLKTLRLHNVELQHSIGTQSFIDALGSPCTPVLEELDLSSCTTDSLTVSVLADALARARSLRRVSLSLAGVRGSGGSHTSNNSGVSELAAVFSNVPHMRQLQQLSLSHCHGVPAAALLSLVMSLASAPLPHLRALTISDSCMDAETAQALTQLVSGCPRLQRLNLARNAIADSAAMHAAAAARRCXXXXXXXXXXXXXXXXXXAIGLVALLHRATRPLVLDFAGGVVGMAPSWALFPSPSCVRSIIQLLRGTHNAHFTVTLSRAALAGATGAIVMGAGGVSLEYSVPRKVAPADCLRRLGFTPAAVLTDAAGGRSASGSSPASGSLGLGWSNSDSIASLGYEGNTVTMTWYQ 603

[Close]

BLAST of jgi.p|Trimin1|352707 vs. uniprot
Match: A0A836CPI9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPI9_9STRA)

HSP 1 Score: 279 bits (714), Expect = 9.970e-82
Identity = 209/553 (37.79%), Postives = 305/553 (55.15%), Query Frame = 0

Query:   24 AVARVLHEDAFSPVLEYLTTSDALRMACTSKHFYTKLPALLSTMDINADALTCAGL---RRFTNVRQVTV---RATAAA------GRKGALRELLACLPSLEALYVGTDAVDEVLGALDASVHGRHLRSLCITPGTAGGSSLAASSQKASWASQLMSLFATCAWPALKHLQLAGDWFEEQCLQFLLLLLSRHGIMQHLEALELCLPVQTPM-LAFAGGAHGNGTKLTSTLGRVLCACGGGAHLKTLRLHNVELQHSIGTQSFIDALGSPCTPVLEELDLSSCTTDSLTVSVLADALARARSLRRVSLSLAGVRGSGGSHTSNNSGVSELAAVFSNVPHMRQLQQLSLSHCHGVPAAALLSLVMSLASAPLPHLRALTISDSCMDAETAQALTQLVSGCPRLQRLNLARNAIADSAAMHAAAAARRCXXXXXXXXXXXXXXXXXXAIGLVALLHRATRPLVLDFAGGVVG-------MAPSWALFPSPSCVRSIIQLLRGTHNAHFTVTLSRAALAGATGAIVMGAGG-VSLEYSVPRKVAPADCLRRLGFTPA 555
            AV     EDAF+ VL +L T +A+R+A T +H    +PA +S++ +  +  T  G    RR  NVR +T    R +AAA      G   AL +LL  LPSLE +++  D++D  L AL  ++    ++ L ++  +   SSL +  Q+ +WA QL++LF++  W +L  LQL GDWF++ CLQ L+ LL+  G++++LE L LCLP QT   L  AG   G    L   LG  L   G GA L+ L + N+ L      Q F  AL    TP+L +L L +C   +   S LA  +AR   +RR+   L G+ G+G S T +   + +LAA     PH+  L+ L+L++ H     A L+L  +LA+APLP L  LTI+ + + A+ A  ++ +V+  P L++L+L   A+ D AA++ AAAA                     A+G+V LL R  + LV+DF  G               ALFPSP CVRSI++L+R  +N +F V LSRAA+AGATG+IVM + G V+LEY +PRK+A A+ L   G   A
Sbjct:   39 AVGLSSQEDAFAVVLGFLGTPEAMRLAATCRHLCRVVPAAVSSICV-CNLTTFRGAPAWRRLVNVRTLTASAGRTSAAAAAHNDTGHNAALGQLLLSLPSLEEVHITNDSIDGTLWALHEALVTDQVKVLSLSTASGAPSSLCSYEQRRAWAGQLLALFSSRPWTSLTSLQLQGDWFDQLCLQDLIHLLAVTGVLRNLETLTLCLPPQTAAGLGEAGTMEG--VDLAGALGAALSTSGNGARLRQLSVANLCLATDSAAQLFA-ALNKLHTPLLTDLALENCPLGAAAASALAAVIARTPRMRRIEACLGGL-GAGASDTCS---LLDLAAALRAGPHLASLETLALTNGHSAAPEATLALAAALAAAPLPRLARLTIASTLLAADAAHQVSLIVAHAPALRQLDLPHCALGDRAALYVAAAAWHRCPRLARLRVGGNRITELGAMGVVGLLRRCRQRLVVDFTSGAAAPLGXXXXXXXXXALFPSPPCVRSIVELVRSGNNPNFFVLLSRAAVAGATGSIVMSSTGQVALEYCIPRKLAAANRLVSPGLADA 583

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|352707 vs. uniprot

BLAST of jgi.p|Trimin1|352707 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
A0A835ZB08_9STRA	0.000e+0	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CPI9_9STRA	9.970e-82	37.79	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SMART	SM00368	LRR_RI_2	coord: 380..407 e-value: 69.0 score: 4.2 coord: 281..308 e-value: 14.0 score: 9.0 coord: 437..464 e-value: 3.7 score: 13.1 coord: 408..435 e-value: 30.0 score: 6.7
None	No IPR available	PANTHER	PTHR24113	RAN GTPASE-ACTIVATING PROTEIN 1	coord: 170..455
None	No IPR available	SUPERFAMILY	52047	RNI-like	coord: 158..476
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 27..326 e-value: 1.5E-8 score: 35.3
IPR032675	Leucine-rich repeat domain superfamily	GENE3D	3.80.10.10	Ribonuclease Inhibitor	coord: 331..481 e-value: 4.0E-17 score: 64.0
IPR001611	Leucine-rich repeat	PFAM	PF13516	LRR_6	coord: 408..427 e-value: 1.6 score: 9.0

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_129	contig	Contig_129:167266..169077 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|352707	mRNA_9835	Tribonema minus UTEX_B_3156	mRNA	Contig_129 167266..169230 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|352707|estExt_Genemark1.C_Ctg_1290018 ID=Trimin1|352707|estExt_Genemark1.C_Ctg_1290018|Name=jgi.p|Trimin1|352707|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=604bp
MGAAMRRKRRQQQSLWGFSSTTAAVARVLHEDAFSPVLEYLTTSDALRMA
CTSKHFYTKLPALLSTMDINADALTCAGLRRFTNVRQVTVRATAAAGRKG
ALRELLACLPSLEALYVGTDAVDEVLGALDASVHGRHLRSLCITPGTAGG
SSLAASSQKASWASQLMSLFATCAWPALKHLQLAGDWFEEQCLQFLLLLL
SRHGIMQHLEALELCLPVQTPMLAFAGGAHGNGTKLTSTLGRVLCACGGG
AHLKTLRLHNVELQHSIGTQSFIDALGSPCTPVLEELDLSSCTTDSLTVS
VLADALARARSLRRVSLSLAGVRGSGGSHTSNNSGVSELAAVFSNVPHMR
QLQQLSLSHCHGVPAAALLSLVMSLASAPLPHLRALTISDSCMDAETAQA
LTQLVSGCPRLQRLNLARNAIADSAAMHAAAAARRCCPDLALLQLGGNRL
TDIGAIGLVALLHRATRPLVLDFAGGVVGMAPSWALFPSPSCVRSIIQLL
RGTHNAHFTVTLSRAALAGATGAIVMGAGGVSLEYSVPRKVAPADCLRRL
GFTPAAVLTDAAGGRSASGSSPASGSLGLGWSNSDSIASLGYEGNTVTMT
WYQ*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR032675	LRR_dom_sf
IPR001611	Leu-rich_rpt