mRNA_9834 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352706
Unique NamemRNA_9834
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A835ZFQ3_9STRA (SGF29 tudor-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZFQ3_9STRA)

HSP 1 Score: 551 bits (1421), Expect = 1.140e-197
Identity = 291/291 (100.00%), Postives = 291/291 (100.00%), Query Frame = 1
Query:    1 MAHIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLPNT 873
            MAHIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLPNT
Sbjct:    1 MAHIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLPNT 291          
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: D7FYG8_ECTSI (SGF29 C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYG8_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 6.940e-55
Identity = 119/288 (41.32%), Postives = 169/288 (58.68%), Query Frame = 1
Query:   10 IEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVL-GSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQI-HSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
            ++DF+D ++T+PNE++R+  L+R+LDK     S+EL      F+            +A+ K++ R D  ++++P  LV+DP  +A+I +  ++ +QI DEKVAIADQ H  VA  L+RLT DLA  ++ L + G                      FD   A  G++VA + +   D WVLGRV  +   +G Y VMDEDDNSK   +DE  V+ L G   +LSKG+ V+AVY DTTSFY A I++PPR   QI +  TA VQF DDAD+ G+TPHR +   HI+ LP
Sbjct:   14 VDDFMDGMTTMPNEIRRNSQLMRTLDKDAHGLSSELEALHNKFLG-----------QAREKMKARGD-SQELDPKVLVDDPPLMAEIDSLFSRTKQIVDEKVAIADQTHQMVADRLKRLTTDLASFEQTLHSQG---------------------EFDVGAAQPGDQVAFQEDPEAD-WVLGRVLSWMHETGQYEVMDEDDNSKKLTMDEHQVIPLEGRTERLSKGDDVLAVYVDTTSFYHATIAIPPRGRGQIGNGGTAHVQFVDDADEHGVTPHRAVPIIHIIKLP 267          
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S2G351_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G351_9STRA)

HSP 1 Score: 132 bits (331), Expect = 6.120e-34
Identity = 78/206 (37.86%), Postives = 115/206 (55.83%), Query Frame = 1
Query:  268 IAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHS--TTASVQFEDDADDSGMTPHRVILTKHIMPLPNT*G 879
            +A+KR +  Q+A EKV I++Q ++    ++ +L  +L   +E L TSG                      F    A  G++VA KP+     W+L RV+EYD NSG Y ++DEDD +K Y V E  VV+L  G +L++GE V A+YPDTTSFY AV++  PRR +   +     +VQF DDAD++G  P R I  ++++  P   G
Sbjct:    9 LASKRQRAHQMAGEKVQISEQAYNLAENYINKLDLELGKFEEHLRTSG---------------------EFSASGASPGDQVAAKPDEE---WILARVQEYDINSGFYTLLDEDDQNKTYSVSESFVVML-EGARLTRGEEVYAIYPDTTSFYPAVVTSAPRRSASAANGPVFCTVQFHDDADETGNNPDRQIALQYVIRPPEEPG 189          
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S2W6R2_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W6R2_9STRA)

HSP 1 Score: 130 bits (327), Expect = 1.440e-32
Identity = 80/205 (39.02%), Postives = 116/205 (56.59%), Query Frame = 1
Query:  265 DIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVI-SVPPRRGSQI--HSTTASVQFEDDADDSGMTPHRVILTKHIMPLPN 870
            DIAAKR + +Q+ DEKV +++QM D    HL RL +D+   ++ L  +G                      +   +A  G++VAV+ E     W+LGRV EYD  +G+Y V DED+  K ++V +  ++ L    KLSKGE V+AVYPDTTSFY A++ SV  + G  +   S+  +VQF DD DDSG+ P R +   HI+  P+
Sbjct:   78 DIAAKRRRAEQMVDEKVQVSEQMVDLCDVHLTRLQQDIRRFEDYLRANG---------------------EYSAGVASAGDQVAVQVEEE---WILGRVWEYDIAAGVYTVGDEDEAEKTFQVSDAHIIRLEQ-LKLSKGEEVLAVYPDTTSFYPAIVTSVSRKMGGALAGDSSFCTVQFHDDEDDSGINPDRSVKILHIIRPPD 257          
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S2UAL2_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UAL2_9STRA)

HSP 1 Score: 121 bits (304), Expect = 7.920e-29
Identity = 98/309 (31.72%), Postives = 160/309 (51.78%), Query Frame = 1
Query:   10 IEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVS---------LLLDEKGTREAKRKLRERTD---------RDRDV----EPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDED-DNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
            +E F++ IST+P+E++R+L L++ LDKS     +EL +A+  +++ +         LL ++        K +   D         R RD+    E    VEDP  L  I+  R +  Q+ +EKVAIADQ +  + + ++RL +D+A  + +L+     TG    A +GG        + D+  A     V V P   +  W+L +V  ++  +G Y + DED +++K + + E  VVVL    +LS+G+ + AVYPDTTSFY A +    R+      T   V F+DD D+ G+T  + +L KH+M  P
Sbjct:    9 LESFIENISTLPHELRRNLELMKDLDKSCSAVVSELQQAQVEYVTAARAKIDALPVLLQNDNXXXXXXXKSQGTGDEQPNNNTKGRKRDLPTTEELVAYVEDPPPLWHISKLRRQASQLVEEKVAIADQAYSLIQSTVQRLDKDIAEFETLLKG----TGEFEVAVVGGG-------KPDDLAA-----VQVTPSSPD--WILAKVISHNRETGTYKLSDEDVESNKIFTLPESQVVVLNILERLSRGDMIYAVYPDTTSFYPATVVQSARK------TFVMVNFKDDGDEHGVTHDKAVLLKHVMRPP 293          
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A1Z5KGC0_FISSO (SAGA-associated factor 29 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KGC0_FISSO)

HSP 1 Score: 120 bits (301), Expect = 1.600e-28
Identity = 91/307 (29.64%), Postives = 152/307 (49.51%), Query Frame = 1
Query:    7 HIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAE--------AERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLV-----------EDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDED-DNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
            ++E F+++++T+P +V+R+L L++ LD+S +   A+L E        AE   + + +   E G          R  R  D E A ++            D  A+  I A +A C Q ADEKV +A Q ++++ A + RL  DL  + ++L+  G                      F +    +  ++A      E  W+L +V E+D  +  Y ++DED ++ K + + E  VV+L    +LSKG++V AVYPDTTSFY+A +   PR+ +   S    V F DD+D+ G+T  + +  +HIM  P
Sbjct:    8 YLESFVESLTTLPYQVRRNLELVQDLDRSYQSDLAKLQELYTAYLQQAEEKVLQLEVAPMETGKGV-------RVIRKEDAEKAPIIIPTTAELMAYTYDADAMRQIEALQADCLQKADEKVCVARQAYEWIDAVVERLDDDLQALSKILQAQG---------------------EFQQEEVAQPNDLAACQLGTE--WILAKVLEFDTKTRTYKLVDEDVESHKVFHLPEDQVVILRGVDRLSKGDTVFAVYPDTTSFYQATVVQVPRKTAGQSSPFVIVSFMDDSDEFGVTHDKTVQLQHIMVPP 284          
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: B7G1U2_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7G1U2_PHATC)

HSP 1 Score: 115 bits (289), Expect = 2.590e-26
Identity = 89/296 (30.07%), Postives = 146/296 (49.32%), Query Frame = 1
Query:    7 HIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFI--------SVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDED-DNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
            ++E F++ +ST+P+EV+R++ LI+ LDK++      L + ++ +I         + L+  E GT   +             E  + V++      I   +  C Q ADEK+AIA Q  D + A  +RL  DL  M+ +L+ +G                     +  E    K  ++A      E  W+L +V  +D  +G+Y + DED +++K + + E  V++L +  KL  G+SV AVYPDTTSFY A +   PR+ S    T   V F DD+D+ G+T  + +  K+ MP P
Sbjct:   66 YLEAFIETLSTLPHEVRRNMDLIKDLDKASGVRGETLRQLQQRYIHQAEDKMMQLELVEREDGTHGVRVIDGTEVIIPTTYELVEYVQNAELERQIQQAQEDCLQKADEKIAIAQQALDRIDAVCQRLDHDLGAMELLLQNTG-------------------DFQTQETKTAKPNDLAACQITPESEWILAKVVTFDPQTGVYKLADEDVESNKLFTLPESQVIILYAIEKLRAGDSVYAVYPDTTSFYPATVVQAPRKASTPFVT---VNFVDDSDEFGVTHDKFVPLKYTMPPP 339          
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A6V2GR38_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2GR38_9STRA)

HSP 1 Score: 112 bits (280), Expect = 4.480e-25
Identity = 69/197 (35.03%), Postives = 113/197 (57.36%), Query Frame = 1
Query:  280 RAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVMDED-DNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLP 867
            + KC ++A EK+ +A+Q +  V A +RRL  DLA  + +L+     TG   A+  GG             +A   +  A++   +   W+L +V  +D  +G+Y + DED +++K + + E  VVVLG   +LS+G+ + AVYPDTTSFY+A ++  PR+ S   S    V F+DD D++G+T  + +L KH+M +P
Sbjct:  154 KQKCFKLAQEKILVANQAYSVVDAAVRRLDFDLAKFETLLKN----TGEFEASLFGG-------------VAKPNDLAAIQVNPNSTDWILAKVISHDLGTGMYKLSDEDVESNKIFNLPESQVVVLGGVDRLSRGDIIYAVYPDTTSFYQATVAQAPRKVSGGGSFVM-VNFKDDGDENGVTHDKAVLMKHVMRVP 332          
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S4A4V8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A4V8_9STRA)

HSP 1 Score: 111 bits (278), Expect = 4.700e-25
Identity = 95/315 (30.16%), Postives = 151/315 (47.94%), Query Frame = 1
Query:   10 IEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVSL-LLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVA----LADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPIAMK-GEEVAVKPERHE-DLWVLGRVKEYDANSGLYLVMDEDDNSKDYKVDEVDVVVL---GSGT---------------------KLSKGESVMAVYPDTTSFYKAVISVPPRR-GSQIHSTTASVQFEDDADDSGMTPHRVILTKHIM 858
            IED L+ I+ +   VKR+L LIR L  +    ++EL   E+    V   +++E   R A  K            PAK +E+ +       + A KR +C  + +E + +A Q    VA H+  +  +LA + + L  +G                      F+   A + G+EVAV+ + ++ + WVLGRV  Y ++  LY V D DD+ K +++    V+ L   G G                      +L KG+ V  +YPDTTSFY+ V+++P RR GSQ    T   QF+DDAD++G+TP R +  K+++
Sbjct:   21 IEDLLEVITPVSGLVKRNLDLIRQLGAT---ATSELEAVEKEEAKVEKDVIEELDKRAAAAK------------PAKKLEEVIGDKKDFEERAEKRRRCDGLFEEAIEVARQTEVAVARHIDHIDGELANLSQHLHATG---------------------EFENAGAARPGDEVAVRLDDYDKEAWVLGRVVRYRSDEDLYEVADADDDRKVFELGATRVIPLTDTGRGVPPAHVLCGAQSCLVDAHDEANRLQKGDEVFGIYPDTTSFYQCVVTIPARRSGSQ--GGTCHCQFQDDADETGITPDRPVPLKYVL 297          
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Match: A0A7S2KGV9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KGV9_9STRA)

HSP 1 Score: 110 bits (274), Expect = 2.270e-24
Identity = 97/324 (29.94%), Postives = 157/324 (48.46%), Query Frame = 1
Query:   10 IEDFLDAISTIPNEVKRSLYLIRSLDK-----SNKDGSAELA---EAERNFISVSLLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQIADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGGSGGSGSGSRFDEPI-----AMKGEEVAVKPE-----RHEDL---------------WVLGRVKEYDANSGLYLVMDEDDNS---KDYKVDEVDVVVLGSGT-KLSKGESVMAVYPDTTSFYKAVISVPPRRGSQIHSTTAS-----VQFEDDADDSGMTPHRVILTKHI 855
            +E FLD IS +P E++R+L L+R LD+     S+K  +AE A    A+R  +   L + E    E +  +   T+     E    + +P  L  I   R   QQ+ +EK A+A+Q ++ +   L +L  DLA  + +L                     G+G     P+      +K    AV P      +  +L               W+LG+V  Y+  +GL++V DED +S   K + + E  +  +G G  K+SKG++V AVYP+TTSFY+A +S PPR+ S   +   S     VQF+DD+D+ G+T  ++++  H+
Sbjct:   16 LEAFLDDISNLPFEIRRNLELLRELDRLYQVSSDKLQAAENAYIERAQRTILDFPLPIHE----EDEAVVVPTTE-----ELRAFIHNPEELEKIETYRRDTQQLIEEKKAVANQTYNIIQCALDKLDTDLAEYENLLR--------------------GTGEFLKAPVIKNERTVKQNLAAVPPNIRLLAKPNELCAMRVNPAQLGTDAEWILGKVISYNPETGLFVVSDEDPDSIEKKKFTLPESQIKTVGYGLEKVSKGDTVFAVYPETTSFYQATVSQPPRKISGSVAAVPSNLFIYVQFKDDSDEFGITHEKMVMLNHV 310          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352706 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZFQ3_9STRA1.140e-197100.00SGF29 tudor-like domain-containing protein n=1 Tax... [more]
D7FYG8_ECTSI6.940e-5541.32SGF29 C-terminal domain-containing protein n=2 Tax... [more]
A0A7S2G351_9STRA6.120e-3437.86Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S2W6R2_9STRA1.440e-3239.02Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2UAL2_9STRA7.920e-2931.72Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A1Z5KGC0_FISSO1.600e-2829.64SAGA-associated factor 29 n=2 Tax=Fistulifera sola... [more]
B7G1U2_PHATC2.590e-2630.07Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6V2GR38_9STRA4.480e-2535.03Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4A4V8_9STRA4.700e-2530.16Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2KGV9_9STRA2.270e-2429.94Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_129contigContig_129:158206..161297 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352706|estExt_Genemark1.C_Ctg_1290017
BRITEko00000,ko00001,ko03021,ko03036,ko03041
KEGG Pathwayko03022,ko05168,map03022,map05168
KEGG koko:K11364,ko:K13154,ko:K14650,ko:K19197
GOsGO:0000122,GO:0000428,GO:0002039,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005667,GO:0005669,GO:0006139,GO:0006351,GO:0006352,GO:0006355,GO:0006357,GO:0006366,GO:0006367,GO:0006725,GO:0006807,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0010646,GO:0012505,GO:0016020,GO:0016070,GO:0016591,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019904,GO:0023051,GO:0030880,GO:0031090,GO:0031208,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032507,GO:0032774,GO:0032991,GO:0033036,GO:0033365,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043433,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045185,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0050789,GO:0050794,GO:0051090,GO:0051171,GO:0051172,GO:0051173,GO:0051179,GO:0051235,GO:0051252,GO:0051253,GO:0051254,GO:0051457,GO:0051641,GO:0051651,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070727,GO:0071704,GO:0072595,GO:0080090,GO:0090304,GO:0090575,GO:0097659,GO:1901360,GO:1901362,GO:1901576,GO:1901796,GO:1902494,GO:1902531,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
Preferred nameTAF3
Descriptionmethylated histone binding
COG categoryB
Max annot lvl2759|Eukaryota
EggNOG OGsCOG5034@1|root,KOG1973@2759|Eukaryota
Evalue6.87e-56
Seed ortholog2880.D7FYG8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSGF29 tudor-like domain protein
Ec32 orthologEc-19_001060.1
TranscriptId353028
TrackFilteredModels1
ProteinId352706
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352706gene_9834Tribonema minus UTEX_B_3156 geneContig_129 158206..161297 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352706Trimin1|352706|estExt_Genemark1.C_Ctg_1290017Tribonema minus UTEX_B_3156 polypeptideContig_129 158206..161249 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9834_1exon_9834_1Tribonema minus UTEX_B_3156 exonContig_129 158206..158382 +
exon_9834_2exon_9834_2Tribonema minus UTEX_B_3156 exonContig_129 158671..158823 +
exon_9834_3exon_9834_3Tribonema minus UTEX_B_3156 exonContig_129 159487..159720 +
exon_9834_4exon_9834_4Tribonema minus UTEX_B_3156 exonContig_129 160104..160169 +
exon_9834_5exon_9834_5Tribonema minus UTEX_B_3156 exonContig_129 160518..160685 +
exon_9834_6exon_9834_6Tribonema minus UTEX_B_3156 exonContig_129 161172..161297 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9834CDS_9834Tribonema minus UTEX_B_3156 CDSContig_129 158206..158382 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9834UTR3_9834Tribonema minus UTEX_B_3156 three_prime_UTRContig_129 161250..161297 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9834 ID=mRNA_9834|Name=jgi.p|Trimin1|352706|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=924bp|location=Sequence derived from alignment at Contig_129:158206..161297+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCACATAGAGGACTTCCTCGATGCCATATCCACAATACCCAATGA
GGTCAAGCGCAGTTTGTACCTCATCAGGTCTCTGGACAAGAGCAACAAGG
ATGGCTCTGCAGAGCTGGCGGAAGCTGAGCGCAATTTTATATCGGTGAGC
CTCCTCTTGGACGAGAAAGGCACGCGTGAAGCAAAGCGTAAGCTGCGGGA
AAGGACAGACAGGGACAGGGATGTGGAGCCTGCGAAACTTGTGGAGGACC
CGGTCGCGCTCGCAGACATCGCTGCCAAACGCGCCAAGTGCCAGCAGATT
GCGGATGAGAAGGTGGCCATTGCAGATCAGATGCACGACTACGTGGCCGC
GCACCTGCGGCGCCTCACGCGCGACCTGGCCGTCATGGACGAGATGCTGG
AGACGTCGGGCCTGCGCACGGGCACCGCGGCGGCGGCCAGCCTCGGCGGC
AGCGGCGGCAGCGGCAGCGGCAGCCGCTTCGACGAGCCCATCGCCATGAA
GGGCGAGGAGGTCGCCGTGAAGCCGGAGCGACACGAGGACCTCTGGGTGC
TGGGCAGGGTCAAGGAGTACGACGCGAACAGCGGCCTGTACCTGGTCATG
GACGAGGATGACAACAGCAAGGACTACAAGGTCGACGAGGTGGACGTGGT
GGTGCTGGGCAGCGGCACCAAGCTCAGCAAGGGCGAGTCCGTCATGGCGG
TGTACCCCGACACCACCAGCTTTTACAAGGCCGTCATCTCGGTGCCGCCG
CGGCGCGGCTCGCAGATCCACAGCACCACCGCGTCGGTGCAGTTTGAGGA
CGATGCCGACGACTCCGGCATGACGCCGCACCGCGTCATACTCACCAAGC
ACATCATGCCCCTGCCAAACACCTGAGGCGCGAGTCGAGTCGCGTCGACA
GCTTGGCCCAAAGAACGTCTATAC
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protein sequence of jgi.p|Trimin1|352706

>Trimin1|352706|estExt_Genemark1.C_Ctg_1290017 ID=Trimin1|352706|estExt_Genemark1.C_Ctg_1290017|Name=jgi.p|Trimin1|352706|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=292bp
MAHIEDFLDAISTIPNEVKRSLYLIRSLDKSNKDGSAELAEAERNFISVS
LLLDEKGTREAKRKLRERTDRDRDVEPAKLVEDPVALADIAAKRAKCQQI
ADEKVAIADQMHDYVAAHLRRLTRDLAVMDEMLETSGLRTGTAAAASLGG
SGGSGSGSRFDEPIAMKGEEVAVKPERHEDLWVLGRVKEYDANSGLYLVM
DEDDNSKDYKVDEVDVVVLGSGTKLSKGESVMAVYPDTTSFYKAVISVPP
RRGSQIHSTTASVQFEDDADDSGMTPHRVILTKHIMPLPNT*
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mRNA from alignment at Contig_129:158206..161297+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9834 ID=mRNA_9834|Name=jgi.p|Trimin1|352706|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3092bp|location=Sequence derived from alignment at Contig_129:158206..161297+ (Tribonema minus UTEX_B_3156 )
ATGGCTCACATAGAGGACTTCCTCGATGCCATATCCACAATACCCAATGA GGTCAAGCGCAGTTTGTACCTCATCAGGTCTCTGGACAAGAGCAACAAGG ATGGCTCTGCAGAGCTGGCGGAAGCTGAGCGCAATTTTATATCGGTGAGC CTCCTCTTGGACGAGAAAGGCACGCGTGTGAGGTCGTCACTCTTGCCCTC ATTATGCCAGCAATATGGTGACCATCCGAGCTTGAATGGGGATTTGAGCA GCTGGTTGATTATGGCCACCAAATGAATCAATGATTACAATGATTATGAA CTCATTCACTGCTGCCGCAGCGCTCATGTACTGCCGAGGTGGTGCGCTGC AGGTGAACGACACCTGTCATCGAAGCTGTTGCCTTGCACCATCCGCACGT GCAGCTGCCACGTGCTGCTCAAGCAAGGAGTGCCAATGTATCCCCTGTTG GAAATTCAACTGCAGGAAGCAAAGCGTAAGCTGCGGGAAAGGACAGACAG GGACAGGGATGTGGAGCCTGCGAAACTTGTGGAGGACCCGGTCGCGCTCG CAGACATCGCTGCCAAACGCGCCAAGTGCCAGCAGATTGCGGATGAGAAG GTGGCCATTGCAGATCAGGTAAGCGGCTCTGCTGCTGCACTTGCGGACAC TTACTGTCGGGAGGTCAGCGGCATTGAGTGCACGCGCTGTACCAAAAAGG CATGCATTCGAAAGCTTTTTTGAACGTACCAGTGCTCAGACTGTTCATCA GTATACTGAGTACACAACACCCTTGCACAATTGGCGGCAACCAGGTGTGC CAAGAGGGCCACTCAAAGCAGCAACATATAAAGGGACGGGACACATTGCC TGCCACTCATATTGTCACACCAACAGACTAATGTGTAAGACTCACTCTAT ACTTCACGACTCTTTGTGGCACGTCTTTTCTTGCTGCGGATAGTATAGGA CAGCAGTCTTCGCCTAGTGCAGAACGCATTTCAATCTTATGTTCGCAGGC TTGTGTGATGCGAACTATGCATGATGTGACTGCAAGGCCATACCGCTCCG CACCATCCGTGTGCTCCCCTATGTCAGCTGCCTCAAGAGCTGCAGATAGT GCCAGGTTCCTTATGGCACTAACATGACCAGAGTACCTATGGTTGCAGCA GCCTGGACTCACCACAGCAACTGCCATCCCATCACACCGACCACGCGCCA TCCCGTTCATACCTGAACCTCACGCCGTGGTGACGCATCGCTGCCCCCCC CCCCTCCCCCCCCCCCCCCCCTGCTGCGAAGATGCACGACTACGTGGCCG CGCACCTGCGGCGCCTCACGCGCGACCTGGCCGTCATGGACGAGATGCTG GAGACGTCGGGCCTGCGCACGGGCACCGCGGCGGCGGCCAGCCTCGGCGG CAGCGGCGGCAGCGGCAGCGGCAGCCGCTTCGACGAGCCCATCGCCATGA AGGGCGAGGAGGTCGCCGTGAAGCCGGAGCGACACGAGGACCTCTGGGTG CTGGGCAGGGTCAAGGTGCGCACGCGCTCGTGGTCTGGTGAACTCTGATA GAACTCTGACCATTGGTCGTGGACTGAGCGCTGGTGTGAAATGGTGACAG CGCGAGAGCTCGTTGCGACACATGGCGGGCTCAGATGCGCTGTGGCCCTG CTTTCATGTTGACGTCGCATGGCGATTTACGCATCGTCAGCCATTGAGCA GCTGCCACTGTGCCTGTCCTATGCTGGTGCGCCAATATCAATTAGGGTCG CTAATGATCCGCTGGCGCACGTCAGGGCTGCTGCTTTGGCGGTATGCACA GTGTGCACAGGCCAAAAGAACGGCTTCGCGCATCCGCACCTGCTCGTACT CTGTGCGCTGACGCTGTCCCGACGTTCCAACGCTGTGTCCTTCTGCAGGA GTACGACGCGAACAGCGGCCTGTACCTGGTCATGGACGAGGATGACAACA GCAAGGACTACAAGGTGCGTGCCAGCACTCGCAGCAATGATGGAGAAGGC GGCGTTCACATGCCGCAGTCGGATGTTGCAACAGCGGCGGCTGCCGCGCC GTCACTGCCCCTGGCATCGCGGGCCCGGCGACGCGCAATGAGAAGTGGGG TTTCGCTAGAGCGCAGCGCCGCTCCTGGGTGGCACTTCGGGGTGCGCCGT CGAAATGTCATACTTGTACTTCAAGTACATGCAACGACGTGGCGAGTGAA TACATCGCGCCTGCTGCCCGAACAGCATCGTGTACAGGGAATTCTGAGCA GTATGCATAGTCGTTGACTCGCTCACGTCTACCCCGCCACGCCGCGTGCT GCCGCGGCGCAGGTCGACGAGGTGGACGTGGTGGTGCTGGGCAGCGGCAC CAAGCTCAGCAAGGGCGAGTCCGTCATGGCGGTGTACCCCGACACCACCA GCTTTTACAAGGCCGTCATCTCGGTGCCGCCGCGGCGCGGCTCGCAGATC CACAGCACCACCGCGTCGGTGCAGTTTGAGGTGAGCGGCGCACACACCGC CTGCGTGCGCGAGCTGCTGTCGCCGTGGATCAGGCAACGCCGTGTGCGCT TTTGTGCGCTGTGCACGCGCCTGCCTCAGCCGCTGGTGATAGTGTACTTC TACTCTGTTGCAGTGTGAGCTATGCGCGGCCAGTTGCGGCTTTAGGGGTT TACGTGTGGCTGCGAAGTTGTGTGCGTGCTGGACGGAACACCACTGATGA TTGCACCATAGTTGTTGTCCGTTGAACATTGGATGCTTGCGTGGTACCAG CTCAGGTGTGCCACACACACTTCGCCCGCAGCTTGCAGCCTTCTCAGCAT GCGCCTCCGTGTCGTGCATGGGCAGCTGGAAACACCAGTCTCAAGTACCC TAGAAGGGGTTTACAGTTGAGCAGCGGCGCATCCAGATGGTTGCCTGTCG TTCGCTACATCCGTGTTGTCCAACGCCTTCTAAAACGTGCACTTGCGCGC TGCTACGCCGACGCAGGACGATGCCGACGACTCCGGCATGACGCCGCACC GCGTCATACTCACCAAGCACATCATGCCCCTGCCAAACACCTGAGGCGCG AGTCGAGTCGCGTCGACAGCTTGGCCCAAAGAACGTCTATAC
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Coding sequence (CDS) from alignment at Contig_129:158206..161297+

>mRNA_9834 ID=mRNA_9834|Name=jgi.p|Trimin1|352706|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=876bp|location=Sequence derived from alignment at Contig_129:158206..161297+ (Tribonema minus UTEX_B_3156 )
ATGGCTCACATAGAGGACTTCCTCGATGCCATATCCACAATACCCAATGA
GGTCAAGCGCAGTTTGTACCTCATCAGGTCTCTGGACAAGAGCAACAAGG
ATGGCTCTGCAGAGCTGGCGGAAGCTGAGCGCAATTTTATATCGGTGAGC
CTCCTCTTGGACGAGAAAGGCACGCGTGAAGCAAAGCGTAAGCTGCGGGA
AAGGACAGACAGGGACAGGGATGTGGAGCCTGCGAAACTTGTGGAGGACC
CGGTCGCGCTCGCAGACATCGCTGCCAAACGCGCCAAGTGCCAGCAGATT
GCGGATGAGAAGGTGGCCATTGCAGATCAGATGCACGACTACGTGGCCGC
GCACCTGCGGCGCCTCACGCGCGACCTGGCCGTCATGGACGAGATGCTGG
AGACGTCGGGCCTGCGCACGGGCACCGCGGCGGCGGCCAGCCTCGGCGGC
AGCGGCGGCAGCGGCAGCGGCAGCCGCTTCGACGAGCCCATCGCCATGAA
GGGCGAGGAGGTCGCCGTGAAGCCGGAGCGACACGAGGACCTCTGGGTGC
TGGGCAGGGTCAAGGAGTACGACGCGAACAGCGGCCTGTACCTGGTCATG
GACGAGGATGACAACAGCAAGGACTACAAGGTCGACGAGGTGGACGTGGT
GGTGCTGGGCAGCGGCACCAAGCTCAGCAAGGGCGAGTCCGTCATGGCGG
TGTACCCCGACACCACCAGCTTTTACAAGGCCGTCATCTCGGTGCCGCCG
CGGCGCGGCTCGCAGATCCACAGCACCACCGCGTCGGTGCAGTTTGAGGA
CGATGCCGACGACTCCGGCATGACGCCGCACCGCGTCATACTCACCAAGC
ACATCATGCCCCTGCCAAACACCTGA
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