mRNA_15293 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: A0A836CP60_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP60_9STRA) HSP 1 Score: 221 bits (562), Expect = 4.500e-69 Identity = 109/109 (100.00%), Postives = 109/109 (100.00%), Query Frame = 2
Query: 119 MAEQAAPSKWALRKEARSAMYSMSTDAVAPVRKTARRRLNDPDPNALCQKCLNKGHWTYQCNSNAPVYKVRPSSTALMLEGKRTFDLALPPDEAERRAHKEQQQRAANG 445
MAEQAAPSKWALRKEARSAMYSMSTDAVAPVRKTARRRLNDPDPNALCQKCLNKGHWTYQCNSNAPVYKVRPSSTALMLEGKRTFDLALPPDEAERRAHKEQQQRAANG
Sbjct: 1 MAEQAAPSKWALRKEARSAMYSMSTDAVAPVRKTARRRLNDPDPNALCQKCLNKGHWTYQCNSNAPVYKVRPSSTALMLEGKRTFDLALPPDEAERRAHKEQQQRAANG 109
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: A0A2D4CDS5_PYTIN (Uncharacterized protein n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDS5_PYTIN) HSP 1 Score: 77.0 bits (188), Expect = 5.890e-14 Identity = 48/105 (45.71%), Postives = 62/105 (59.05%), Query Frame = 2
Query: 125 EQAAPSKWALRKEARSAMYSMSTDAVAPVRKTARRRLND-PDPNALCQKCLNKGHWTYQCNSNAPVYKVRPSSTALMLEGK--RTFDLALPPDEAERRAHKEQQQ 430
++AAPSKWA RKEA+ MY STD V R++ R + NA CQKCL GHWTY+C N PVY R S TA + + K + F+ PP+ E KEQ++
Sbjct: 6 DEAAPSKWAQRKEAKRNMYLTSTDQVLVQRRSGLGRSSSHAAANARCQKCLRDGHWTYECK-NEPVYVARASRTAQLKKPKLRQPFNADKPPEMVE----KEQEE 105
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: A0A8K1FDP8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDP8_PYTOL) HSP 1 Score: 69.3 bits (168), Expect = 1.120e-10 Identity = 42/95 (44.21%), Postives = 53/95 (55.79%), Query Frame = 2
Query: 125 EQAAPSKWALRKEARSAMYSMSTDAVAPVRKTARRRLNDPDPNALCQKCLNKGHWTYQCNSNAPVYKVRPSSTALMLEGK--RTFDLALPPDEAE 403
E AAPS WA+RKEA+ MY STD V R+ A CQKCL GHWTY+C ++A VY R S T+ + K + F+ PP+ AE
Sbjct: 6 EDAAPSAWAMRKEAKRNMYLTSTDHVRVQRRGLGGSSGGSAAAAQCQKCLQAGHWTYECKNDA-VYVKRASRTSQLKNPKLRQPFNQDKPPETAE 99
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: D0P073_PHYIT (Uncharacterized protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0P073_PHYIT) HSP 1 Score: 66.6 bits (161), Expect = 9.580e-10 Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 2
Query: 146 WALRKEARSAMYSMSTDAVAPVRKTARRRLNDPDPN---ALCQKCLNKGHWTYQCNSNAPVYKVRPSSTALMLEGK--RTFDLALPPD 394
WALRKEAR MY STD V + RR L + A+CQKCL +GHWTY+C + A VY RPS + + K + F+ +PP+
Sbjct: 13 WALRKEARRHMYETSTDQV----RVHRRGLGSSSSSSVAAMCQKCLRRGHWTYECKNGA-VYVQRPSRSQQLRNPKLRQPFNKEMPPE 95
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: A0A6H5KZ87_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ87_9PHAE) HSP 1 Score: 65.9 bits (159), Expect = 9.710e-10 Identity = 39/93 (41.94%), Postives = 50/93 (53.76%), Query Frame = 2
Query: 119 MAEQAAPSKWALRKEARSAMYSMSTDAVAPVRKTARRRLNDPDPNALCQKCLNKGHWTYQCNSNAPVYKVRPSSTALMLEG--KRTFDLALPP 391
M + A S+WA RK+ R MY+ S+DA+ V R+ N +CQKCL GHWTY+C A YK R S T ++ K F L LPP
Sbjct: 1 MGDAAPVSRWAQRKQQREMMYATSSDAIQGVF----RKKQKAAKNMVCQKCLQVGHWTYECKGKA-TYKARVSRTEILENPDLKPKFHLDLPP 88
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: A0A0P1AIB6_PLAHL (Multidrug oligosaccharidyl-lipid polysaccharide flippase superfamily n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AIB6_PLAHL) HSP 1 Score: 67.0 bits (162), Expect = 5.870e-9 Identity = 39/86 (45.35%), Postives = 50/86 (58.14%), Query Frame = 2
Query: 143 KWALRKEARSAMYSMSTDAVAPVRKTARRRLNDPDPNALCQKCLNKGHWTYQCNSNAPVYKVRPSSTALMLEGK--RTFDLALPPD 394
KWA RKEAR MY+ STD V V + + P+ ALCQKCL GHWTY+C + A VY RPS + + K + F+ PP+
Sbjct: 522 KWAQRKEARRNMYATSTDQVR-VHRRGLGASSSPNVAALCQKCLQPGHWTYECKNEA-VYVQRPSRSQQLRNPKLRQPFNQDKPPE 605
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: A0A7I8KKQ7_SPIIN (Hypothetical protein n=2 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8KKQ7_SPIIN) HSP 1 Score: 58.5 bits (140), Expect = 1.820e-6 Identity = 33/74 (44.59%), Postives = 43/74 (58.11%), Query Frame = 2
Query: 137 PSKWALRKEARSAMYSMSTDAVAPVRKTARRRLNDPDPN-----ALCQKCLNKGHWTYQCNSNAPVYKVRPSST 343
PS+W RKEA+ MY MST+ + + R+ L P + A CQ+CL GHWTY+C + A VY RPS T
Sbjct: 52 PSRWQERKEAKRQMYLMSTEKAVTLGE--RKDLKAPSSSSGGVAAQCQRCLQPGHWTYECKNEA-VYISRPSRT 122
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: A0A1D1XVD3_9ARAE (Zinc finger CCHC domain-containing protein 10 n=2 Tax=Anthurium amnicola TaxID=1678845 RepID=A0A1D1XVD3_9ARAE) HSP 1 Score: 58.2 bits (139), Expect = 2.520e-6 Identity = 32/71 (45.07%), Postives = 41/71 (57.75%), Query Frame = 2
Query: 137 PSKWALRKEARSAMYSMSTDAVAPV--RKTARRRLNDPDPNALCQKCLNKGHWTYQCNSNAPVYKVRPSST 343
PS+W RKEA+ MY MST+ + RK + + A CQ+CL GHWTY+C + A VY RPS T
Sbjct: 52 PSRWQERKEAKRQMYLMSTEKAVTLGERKDLKVSSSAGGVAAQCQRCLQAGHWTYECKNEA-VYISRPSRT 121
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: A0A2P4PTD7_RHIID (Zinc knuckle-domain-containing protein n=2 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A2P4PTD7_RHIID) HSP 1 Score: 55.5 bits (132), Expect = 3.340e-6 Identity = 23/51 (45.10%), Postives = 29/51 (56.86%), Query Frame = 2
Query: 242 PDPNALCQKCLNKGHWTYQCNSNAPVYKVRPSSTALMLEGKRTFDLALPPD 394
P N CQKCL GHWTY+C N P YK RP+ T + + + L LP +
Sbjct: 18 PSANTKCQKCLETGHWTYECK-NTPTYKARPTRTQQLTKPLKPISLELPDE 67
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Match: A0A7I8L7S2_SPIIN (Hypothetical protein n=1 Tax=Spirodela intermedia TaxID=51605 RepID=A0A7I8L7S2_SPIIN) HSP 1 Score: 57.8 bits (138), Expect = 3.410e-6 Identity = 41/137 (29.93%), Postives = 68/137 (49.64%), Query Frame = 2
Query: 14 IGAQRLSTRLLFD*SR-GDLCSEQTHAAGIQ*SSGRMAEQAAPSKWALRKEARSAMYSMSTDAVAPV--RKTARRRLNDPDPNA-LCQKCLNKGHWTYQCNSNAPVYKVRPSST------ALMLEGKRTFDLALPPD 394
+ A+R+ + L G +E+ AA ++ + ++ PS+W RKEA+ MY MST+ + RK R A CQ+CL GHWTY+C + A +Y RPS + +LM++ +++ P +
Sbjct: 10 VAAERIKAQALSQAKGLGRAQAERAAAAAVRNVNAYGQKEEGPSRWQERKEAKRQMYLMSTEKAVTLGQRKDLRSSAASASGTAGQCQRCLQAGHWTYECKNEA-LYISRPSRSQQLKNPSLMMKPSTHYEMHNPDE 145 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352678 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 17
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_15293 ID=mRNA_15293|Name=jgi.p|Trimin1|352678|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=789bp|location=Sequence derived from alignment at Contig_128:112281..114709+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. CTGCGATCAAAGCATTGGCGCGCAAAGATTGTCGACAAGATTGCTGTTCGback to top protein sequence of jgi.p|Trimin1|352678 >Trimin1|352678|estExt_Genemark1.C_Ctg_1280014 ID=Trimin1|352678|estExt_Genemark1.C_Ctg_1280014|Name=jgi.p|Trimin1|352678|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=207bp MAEQAAPSKWALRKEARSAMYSMSTDAVAPVRKTARRRLNDPDPNALCQKback to top mRNA from alignment at Contig_128:112281..114709+ Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_15293 ID=mRNA_15293|Name=jgi.p|Trimin1|352678|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2429bp|location=Sequence derived from alignment at Contig_128:112281..114709+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_128:112281..114709+ >mRNA_15293 ID=mRNA_15293|Name=jgi.p|Trimin1|352678|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=621bp|location=Sequence derived from alignment at Contig_128:112281..114709+ (Tribonema minus UTEX_B_3156 )back to top |