mRNA_15950 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|141951
Unique NamemRNA_15950
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: A0A835ZEA3_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA3_9STRA)

HSP 1 Score: 105 bits (261), Expect = 7.500e-29
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR
Sbjct:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 51
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BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: A0A836CPG1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPG1_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 1.990e-21
Identity = 46/51 (90.20%), Postives = 49/51 (96.08%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTAEEHERFLQGL  +NKQWKLIADLIRTRTVVQVRTHAQKHFQK+A+
Sbjct:   25 TGRWTAEEHERFLQGLALYNKQWKLIADLIRTRTVVQVRTHAQKHFQKVAK 75
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BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: A0A8J9S9N3_PHATR (Hypothetical protein (Fragment) n=1 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9S9N3_PHATR)

HSP 1 Score: 80.1 bits (196), Expect = 9.350e-17
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTAEEH  FLQGL +H K WK IA LI++RTVVQ+RTHAQK+FQK+A+
Sbjct:  117 TGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 167
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BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: A0A1Z5KDK7_FISSO (Protein MYSM1 n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KDK7_FISSO)

HSP 1 Score: 80.1 bits (196), Expect = 2.660e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTAEEH  FLQGL +H K WK IA LI++RTVVQ+RTHAQK+FQK+A+
Sbjct:   98 TGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 148
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BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: B7GAW9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAW9_PHATC)

HSP 1 Score: 80.1 bits (196), Expect = 2.720e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTAEEH  FLQGL +H K WK IA LI++RTVVQ+RTHAQK+FQK+A+
Sbjct:  117 TGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 167
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BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: A0A6S8P3T4_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8P3T4_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.740e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTAEEH  FLQGL +H K WK IA LI++RTVVQ+RTHAQK+FQK+A+
Sbjct:   45 TGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 95
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BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: A0A7S1V9A3_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1V9A3_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.750e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTA+EH  FLQGL EH K WK IA LI++RTVVQ+RTHAQK+FQK+A+
Sbjct:  167 TGRWTADEHRLFLQGLEEHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 217
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BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: A0A7S2R756_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R756_9STRA)

HSP 1 Score: 80.1 bits (196), Expect = 2.760e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTAEEH  FLQGL +H K WK IA LI++RTVVQ+RTHAQK+FQK+A+
Sbjct:  191 TGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 241
[Close]
BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: B7GAX0_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GAX0_PHATC)

HSP 1 Score: 80.1 bits (196), Expect = 2.770e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTAEEH  FLQGL +H K WK IA LI++RTVVQ+RTHAQK+FQK+A+
Sbjct:  117 TGRWTAEEHRLFLQGLEQHGKGWKKIASLIKSRTVVQIRTHAQKYFQKLAK 167
[Close]
BLAST of jgi.p|Trimin1|141951 vs. uniprot
Match: B8C919_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C919_THAPS)

HSP 1 Score: 79.7 bits (195), Expect = 3.780e-16
Identity = 37/51 (72.55%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:    1 TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMAR 153
            TGRWTAEEH  FLQGL +H K WK IA LI++RTVVQ+RTHAQK+FQK+A+
Sbjct:  418 TGRWTAEEHRLFLQGLEQHGKGWKKIAGLIKSRTVVQIRTHAQKYFQKLAK 468
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|141951 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZEA3_9STRA7.500e-29100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A836CPG1_9STRA1.990e-2190.20Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A8J9S9N3_PHATR9.350e-1772.55Hypothetical protein (Fragment) n=1 Tax=Phaeodacty... [more]
A0A1Z5KDK7_FISSO2.660e-1672.55Protein MYSM1 n=2 Tax=Fistulifera solaris TaxID=15... [more]
B7GAW9_PHATC2.720e-1672.55Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
A0A6S8P3T4_9STRA2.740e-1672.55Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A7S1V9A3_9STRA2.750e-1672.55Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2R756_9STRA2.760e-1672.55Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
B7GAX0_PHATC2.770e-1672.55Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
B8C919_THAPS3.780e-1672.55Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_124contigContig_124:105165..105557 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|141951|gw1.124.30.1
DescriptionSANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
COG categoryK
Max annot lvl2836|Bacillariophyta
EggNOG OGsKOG0724@1|root,KOG0724@2759|Eukaryota,2XD95@2836|Bacillariophyta
Evalue4.45e-17
Seed ortholog2850.Phatr49525
Hectar predicted targeting categoryno signal peptide or anchor
TranscriptId142273
TrackFilteredModels1
ProteinId141951
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141951gene_15950Tribonema minus UTEX_B_3156 geneContig_124 105165..105557 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|141951Trimin1|141951|gw1.124.30.1Tribonema minus UTEX_B_3156 polypeptideContig_124 105165..105557 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15950_2exon_15950_2Tribonema minus UTEX_B_3156 exonContig_124 105165..105206 -
exon_15950_1exon_15950_1Tribonema minus UTEX_B_3156 exonContig_124 105447..105557 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15950CDS_15950Tribonema minus UTEX_B_3156 CDSContig_124 105447..105557 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15950 ID=mRNA_15950|Name=jgi.p|Trimin1|141951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=153bp|location=Sequence derived from alignment at Contig_124:105165..105557- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ACAGGGCGCTGGACCGCAGAGGAGCATGAGAGGTTTCTTCAGGGGCTGAG
GGAGCACAACAAGCAGTGGAAGCTCATAGCAGATCTCATCCGGACACGGA
CGGTGGTGCAGGTGCGCACACATGCTCAGAAGCACTTCCAGAAAATGGCG
CGG
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protein sequence of jgi.p|Trimin1|141951

>Trimin1|141951|gw1.124.30.1 ID=Trimin1|141951|gw1.124.30.1|Name=jgi.p|Trimin1|141951|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=51bp
TGRWTAEEHERFLQGLREHNKQWKLIADLIRTRTVVQVRTHAQKHFQKMA
R
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mRNA from alignment at Contig_124:105165..105557-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15950 ID=mRNA_15950|Name=jgi.p|Trimin1|141951|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_124:105165..105557- (Tribonema minus UTEX_B_3156 )
ACAGGGCGCTGGACCGCAGAGGAGCATGAGAGGTTTCTTCAGGGGCTGAG
GGAGCACAACAAGCAGTGGAAGCTCATAGCAGATCTCATCCGGACACGGA
CGGTGGTGCAGGTCAGAACCCTTGCAAAACGCTCGCATGTACCCGTATCT
TTGCACAGACACTCCTTGTGGCAGCTGCGAAGCTTGATTTCTCACTGGGA
GGTGCATCCTTGTGTCAAGCACGTGCTCTGGTGCCTTCGGTGGGCCTCGT
CGCAGCTCGTCCGCACTGTTCAGCACAACCGCTGGGTACCCCAAGATCAC
CGGCCAAGCACTCACAACGCTTTCGGCGCCTGTGCTGCGGTGTTCTCTCA
GGTGCGCACACATGCTCAGAAGCACTTCCAGAAAATGGCGCGG
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Coding sequence (CDS) from alignment at Contig_124:105165..105557-

>mRNA_15950 ID=mRNA_15950|Name=jgi.p|Trimin1|141951|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=153bp|location=Sequence derived from alignment at Contig_124:105165..105557- (Tribonema minus UTEX_B_3156 )
ACAGGGCGCTGGACCGCAGAGGAGCATGAGAGGTTTCTTCAGGGGCTGAG
GGAGCACAACAAGCAGTGGAAGCTCATAGCAGATCTCATCCGGACACGGA
CGGTGGTGCAGGTGCGCACACATGCTCAGAAGCACTTCCAGAAAATGGCG
CGG
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