mRNA_14494 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352553
Unique NamemRNA_14494
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: A0A835Z1C3_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1C3_9STRA)

HSP 1 Score: 281 bits (718), Expect = 1.040e-91
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 2 
Query:  104 MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA 607
            MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA
Sbjct:    1 MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA 168
[Close]
BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: D7G8S5_ECTSI (V-type proton ATPase proteolipid subunit n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8S5_ECTSI)

HSP 1 Score: 240 bits (613), Expect = 6.980e-76
Identity = 146/163 (89.57%), Postives = 152/163 (93.25%), Query Frame = 2 
Query:  116 LETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 604
            +ETCPSSAAFFGFMG A+++VF NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIL G+I  P    NT FSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEAL LYG+IVALILSQQSYSC
Sbjct:    1 METCPSSAAFFGFMGVASSMVFGNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILSGAIGMPSDTGNT-FSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALGLYGMIVALILSQQSYSC 162
[Close]
BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: F0YK80_AURAN (V-type proton ATPase proteolipid subunit n=2 Tax=Pelagomonadales TaxID=54409 RepID=F0YK80_AURAN)

HSP 1 Score: 238 bits (607), Expect = 7.350e-75
Identity = 145/166 (87.35%), Postives = 153/166 (92.17%), Query Frame = 2 
Query:  113 SLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQN--TKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 604
            S ETCP+SA FFGFMG  +ALVF+NIGAAYGTAKSGVGI+SMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQG+IT+PD      TKFSSFSGYA+LAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQQS  C
Sbjct:    6 STETCPTSAPFFGFMGVTSALVFANIGAAYGTAKSGVGIASMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGAITKPDAGSGGTTKFSSFSGYAYLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQQSADC 171
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BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: A0A7S3GT47_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GT47_9STRA)

HSP 1 Score: 235 bits (600), Expect = 8.660e-74
Identity = 139/165 (84.24%), Postives = 151/165 (91.52%), Query Frame = 2 
Query:  113 SLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSCA 607
            S ETCP+SA FFGFMG  AAL F+NIGAAYGTAKSGVGI+SMGVM+PGLVM+NIIPVVMAGVLGIYGLIVAVI+QGSIT P  +  TK+SSF+GYA L+AGLCCGLSG XXXXXXXXX DAGVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQQS+SCA
Sbjct:    6 SRETCPTSAPFFGFMGVTAALCFANIGAAYGTAKSGVGIASMGVMHPGLVMKNIIPVVMAGVLGIYGLIVAVIIQGSITVPSADGATKYSSFTGYAHLSAGLCCGLSGLXXXXXXXXXGDAGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQQSFSCA 170
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BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: A0A7S2RWN8_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RWN8_9STRA)

HSP 1 Score: 225 bits (574), Expect = 5.360e-70
Identity = 138/162 (85.19%), Postives = 149/162 (91.98%), Query Frame = 2 
Query:  119 ETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 604
            E CP+SA FFGFMG +AALVF+NIGAAYGTAKSGVGI+SMGVM P LVMRNIIPV+MAGVLGIYGLIVAVIL GSIT+P   ++ KFSSFSG+AFLAAGLCCGLSGXXXXXXXXXXX AGVRAVGQQE+LFVG+ILILIFAEAL LYGLIVALILSQQS SC
Sbjct:    4 ELCPTSAPFFGFMGVSAALVFANIGAAYGTAKSGVGIASMGVMKPNLVMRNIIPVIMAGVLGIYGLIVAVILNGSITKPANNES-KFSSFSGFAFLAAGLCCGLSGXXXXXXXXXXXXAGVRAVGQQEKLFVGVILILIFAEALGLYGLIVALILSQQSVSC 164
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BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: A0A7S2GLL8_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLL8_9STRA)

HSP 1 Score: 224 bits (570), Expect = 2.900e-69
Identity = 136/168 (80.95%), Postives = 153/168 (91.07%), Query Frame = 2 
Query:  101 IMSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 604
            ++S+++E CP+ A FFGFMG ++ALVF+NIGAAYGTAKSG+GI+SMGVM P LVMRNIIPV+MAGVLGIYGLIVAVILQGSIT+P TE  TKFSS+SG+AFLAAGLCCGLSGXXXXXXXXXXX  GVRAVGQQE+LFVG+ILILIFAEAL LYGLIVALILS Q Y C
Sbjct:    5 LLSTAVEACPTYAPFFGFMGVSSALVFANIGAAYGTAKSGIGIASMGVMKPELVMRNIIPVIMAGVLGIYGLIVAVILQGSITKP-TEGVTKFSSYSGFAFLAAGLCCGLSGXXXXXXXXXXXXXGVRAVGQQEKLFVGVILILIFAEALGLYGLIVALILSMQIYEC 171
[Close]
BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: A0A835YJ26_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ26_9STRA)

HSP 1 Score: 218 bits (555), Expect = 4.470e-67
Identity = 129/165 (78.18%), Postives = 145/165 (87.88%), Query Frame = 2 
Query:  110 SSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 604
            SS+ETCP+ A  FGF+G AA+LV +N GAAYGTAK+G+GI+SMGVM+PG+VMRNIIPVVMAGVLGIYGLIV+VIL G+IT       T +S+FSG+A LAAGLCCG+SG XXXXXXX   DAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC
Sbjct:    2 SSMETCPTWAPLFGFLGVAASLVLANTGAAYGTAKAGLGIASMGVMHPGMVMRNIIPVVMAGVLGIYGLIVSVILLGTITGTTPTGVTTYSTFSGFAHLAAGLCCGMSGLXXXXXXXIVGDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 166
[Close]
BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: A0A7S3LI96_9STRA (V-type proton ATPase proteolipid subunit n=2 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LI96_9STRA)

HSP 1 Score: 215 bits (548), Expect = 2.670e-65
Identity = 134/168 (79.76%), Postives = 147/168 (87.50%), Query Frame = 2 
Query:  101 IMSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 604
            IMS  +ETCP+SA FFGFMG  +ALVF+NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+QGSI  P    + ++S ++G+A LAAGLCCGL  XXXXXXXXXXX  GVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQ S+ C
Sbjct:   49 IMSVEMETCPASAPFFGFMGVTSALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSILSPQNGLS-QYSLYTGFAHLAAGLCCGLXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSFVC 215
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BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: B8BTR9_THAPS (V-type proton ATPase proteolipid subunit n=19 Tax=Ochrophyta TaxID=2696291 RepID=B8BTR9_THAPS)

HSP 1 Score: 213 bits (543), Expect = 2.680e-65
Identity = 132/163 (80.98%), Postives = 144/163 (88.34%), Query Frame = 2 
Query:  116 LETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 604
            +ETCP+SA FFGFMG  AALVF+NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+QGSI  P    + ++S ++G+A LAAGLCCGL  XXXXXXXXXXX  GVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQ S+ C
Sbjct:    1 METCPASAPFFGFMGVTAALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGSIVAPQNGLS-QYSLYTGFAHLAAGLCCGLXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNSFVC 162
[Close]
BLAST of jgi.p|Trimin1|352553 vs. uniprot
Match: A0A7S2RP84_9STRA (V-type proton ATPase proteolipid subunit n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RP84_9STRA)

HSP 1 Score: 210 bits (535), Expect = 5.230e-64
Identity = 131/163 (80.37%), Postives = 141/163 (86.50%), Query Frame = 2 
Query:  116 LETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAFLAAGLCCGLSGXXXXXXXXXXXDAGVRAVGQQERLFVGMILILIFAEALALYGLIVALILSQQSYSC 604
            +E CP+SA FFGFMG  AALVF+NIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVI+QG+I +P+      +S FSG+A LAAGLCCG   XXXXXXXXXXX  GVRAVGQQE+LFVGMILILIFAEAL LYGLIVALILSQ  Y C
Sbjct:    7 MEACPASAPFFGFMGVTAALVFANIGAAYGTAKSGVGISSMGVMNPGLVMRNIIPVVMAGVLGIYGLIVAVIIQGAIKKPEGGL-AVYSLFSGFAHLAAGLCCGXXXXXXXXXXXXXXXXGVRAVGQQEKLFVGMILILIFAEALGLYGLIVALILSQNGYDC 168
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352553 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835Z1C3_9STRA1.040e-91100.00V-type proton ATPase proteolipid subunit n=1 Tax=T... [more]
D7G8S5_ECTSI6.980e-7689.57V-type proton ATPase proteolipid subunit n=1 Tax=E... [more]
F0YK80_AURAN7.350e-7587.35V-type proton ATPase proteolipid subunit n=2 Tax=P... [more]
A0A7S3GT47_9STRA8.660e-7484.24V-type proton ATPase proteolipid subunit n=1 Tax=S... [more]
A0A7S2RWN8_9STRA5.360e-7085.19V-type proton ATPase proteolipid subunit n=1 Tax=R... [more]
A0A7S2GLL8_9STRA2.900e-6980.95V-type proton ATPase proteolipid subunit n=1 Tax=D... [more]
A0A835YJ26_9STRA4.470e-6778.18V-type proton ATPase proteolipid subunit n=1 Tax=T... [more]
A0A7S3LI96_9STRA2.670e-6579.76V-type proton ATPase proteolipid subunit n=2 Tax=A... [more]
B8BTR9_THAPS2.680e-6580.98V-type proton ATPase proteolipid subunit n=19 Tax=... [more]
A0A7S2RP84_9STRA5.230e-6480.37V-type proton ATPase proteolipid subunit n=1 Tax=E... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_123contigContig_123:245610..248759 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352553|estExt_Genemark1.C_Ctg_1230033
KEGG TC3.A.2.2
BRITEko00000,ko00001,ko00002,ko01000,ko01001,ko03019,ko03036
KEGG ModuleM00160,M00695
KEGG Pathwayko00190,ko01100,ko01522,ko03015,ko04010,ko04014,ko04020,ko04024,ko04062,ko04113,ko04114,ko04138,ko04140,ko04142,ko04145,ko04211,ko04213,ko04261,ko04270,ko04310,ko04340,ko04341,ko04371,ko04530,ko04540,ko04611,ko04713,ko04714,ko04720,ko04721,ko04723,ko04724,ko04725,ko04726,ko04727,ko04728,ko04740,ko04742,ko04750,ko04910,ko04911,ko04912,ko04913,ko04914,ko04915,ko04916,ko04918,ko04919,ko04921,ko04922,ko04923,ko04924,ko04925,ko04926,ko04927,ko04934,ko04961,ko04962,ko04966,ko04970,ko04971,ko04976,ko05012,ko05020,ko05030,ko05031,ko05032,ko05110,ko05120,ko05146,ko05152,ko05165,ko05166,ko05169,ko05200,ko05203,ko05205,ko05323,ko05414,map00190,map01100,map01522,map03015,map04010,map04014,map04020,map04024,map04062,map04113,map04114,map04138,map04140,map04142,map04145,map04211,map04213,map04261,map04270,map04310,map04340,map04341,map04371,map04530,map04540,map04611,map04713,map04714,map04720,map04721,map04723,map04724,map04725,map04726,map04727,map04728,map04740,map04742,map04750,map04910,map04911,map04912,map04913,map04914,map04915,map04916,map04918,map04919,map04921,map04922,map04923,map04924,map04925,map04926,map04927,map04934,map04961,map04962,map04966,map04970,map04971,map04976,map05012,map05020,map05030,map05031,map05032,map05110,map05120,map05146,map05152,map05165,map05166,map05169,map05200,map05203,map05205,map05323,map05414
KEGG koko:K02155,ko:K04345,ko:K15542
EC2.7.11.11
GOsGO:0000003,GO:0000041,GO:0000220,GO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0000331,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003674,GO:0003824,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005766,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005886,GO:0006403,GO:0006605,GO:0006623,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006826,GO:0006873,GO:0006875,GO:0006878,GO:0006879,GO:0006885,GO:0006886,GO:0006887,GO:0006897,GO:0006955,GO:0006996,GO:0007033,GO:0007034,GO:0007035,GO:0007040,GO:0007042,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007276,GO:0007292,GO:0008104,GO:0008150,GO:0008286,GO:0008324,GO:0008553,GO:0009719,GO:0009725,GO:0009790,GO:0009792,GO:0009894,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010506,GO:0010646,GO:0010647,GO:0010939,GO:0010940,GO:0010941,GO:0010942,GO:0012505,GO:0012506,GO:0015031,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015662,GO:0015672,GO:0015682,GO:0015833,GO:0015931,GO:0015988,GO:0015991,GO:0016020,GO:0016021,GO:0016043,GO:0016192,GO:0016241,GO:0016462,GO:0016469,GO:0016471,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0019222,GO:0019725,GO:0019829,GO:0019899,GO:0019953,GO:0019954,GO:0022414,GO:0022603,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0023051,GO:0023052,GO:0023056,GO:0030001,GO:0030003,GO:0030004,GO:0030111,GO:0030139,GO:0030141,GO:0030177,GO:0030587,GO:0030641,GO:0030659,GO:0030666,GO:0030667,GO:0030670,GO:0030728,GO:0031090,GO:0031164,GO:0031224,GO:0031323,GO:0031329,GO:0031410,GO:0031625,GO:0031982,GO:0032501,GO:0032502,GO:0032504,GO:0032868,GO:0032869,GO:0032870,GO:0032940,GO:0032991,GO:0033036,GO:0033176,GO:0033177,GO:0033179,GO:0033181,GO:0033227,GO:0033365,GO:0033572,GO:0034220,GO:0034613,GO:0035577,GO:0035751,GO:0036230,GO:0036442,GO:0042119,GO:0042221,GO:0042582,GO:0042592,GO:0042623,GO:0042625,GO:0042626,GO:0042886,GO:0043067,GO:0043068,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043299,GO:0043312,GO:0043434,GO:0043492,GO:0044389,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0044703,GO:0044769,GO:0045055,GO:0045169,GO:0045184,GO:0045321,GO:0045335,GO:0045851,GO:0046903,GO:0046907,GO:0046916,GO:0046933,GO:0046961,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048878,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050801,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051236,GO:0051452,GO:0051453,GO:0051641,GO:0051649,GO:0051703,GO:0051704,GO:0051716,GO:0055065,GO:0055067,GO:0055070,GO:0055072,GO:0055076,GO:0055080,GO:0055082,GO:0055085,GO:0060142,GO:0065007,GO:0065008,GO:0070727,GO:0070820,GO:0070821,GO:0070838,GO:0070887,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0072511,GO:0072512,GO:0072594,GO:0072665,GO:0072666,GO:0080171,GO:0090662,GO:0090702,GO:0097708,GO:0098588,GO:0098655,GO:0098657,GO:0098660,GO:0098662,GO:0098771,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099120,GO:0099131,GO:0099132,GO:0099503,GO:0101002,GO:0101003,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902600
Preferred nameATP6V0C
DescriptionATP hydrolysis coupled proton transport
COG categoryC
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0636@1|root,KOG0232@2759|Eukaryota
Evalue3.57e-80
Seed ortholog2880.D7G8S5
Hectar predicted targeting categorysignal peptide
TranscriptId352875
TrackFilteredModels1
ProteinId352553
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352553gene_14494Tribonema minus UTEX_B_3156 geneContig_123 245610..248759 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352553Trimin1|352553|estExt_Genemark1.C_Ctg_1230033Tribonema minus UTEX_B_3156 polypeptideContig_123 246143..248270 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14494_1exon_14494_1Tribonema minus UTEX_B_3156 exonContig_123 245610..245705 +
exon_14494_2exon_14494_2Tribonema minus UTEX_B_3156 exonContig_123 246136..246224 +
exon_14494_3exon_14494_3Tribonema minus UTEX_B_3156 exonContig_123 246760..246911 +
exon_14494_4exon_14494_4Tribonema minus UTEX_B_3156 exonContig_123 247998..248759 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14494UTR5_14494Tribonema minus UTEX_B_3156 five_prime_UTRContig_123 245610..245705 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14494CDS_14494Tribonema minus UTEX_B_3156 CDSContig_123 246143..246224 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14494UTR3_14494Tribonema minus UTEX_B_3156 three_prime_UTRContig_123 248271..248759 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14494 ID=mRNA_14494|Name=jgi.p|Trimin1|352553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1099bp|location=Sequence derived from alignment at Contig_123:245610..248759+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GCGGAGAGCGTGCAGCGAGTGGCCGGCTGTCATCATAGACTCAATTGCAC
AGCTGTACGATAGCTTGCAGTCCCGTTCCTGGTCCGCCGCGCACAGACAC
ATCATGAGCTCATCATTGGAGACGTGCCCTTCATCAGCGGCGTTCTTTGG
TTTCATGGGGACAGCTGCGGCGCTGGTGTTCTCAAACATTGGCGCGGCTT
ATGGCACTGCCAAGTCAGGCGTGGGTATCTCTTCCATGGGCGTGATGAAC
CCTGGTCTGGTGATGCGCAACATCATTCCCGTGGTCATGGCGGGAGTGCT
GGGTATCTATGGCCTGATCGTTGCTGTGATCCTGCAGGGCTCCATCACCC
AGCCCGACACGGAGCAGAACACCAAGTTCTCCTCCTTCTCCGGCTACGCC
TTCCTGGCAGCAGGCCTGTGCTGCGGCCTCAGCGGACTGGCGGCAGGCAT
GGCTATCGGCATCGTTGGCGACGCAGGCGTGCGCGCCGTTGGCCAACAGG
AGCGCCTCTTTGTGGGCATGATCCTCATTCTCATCTTCGCAGAGGCTCTT
GCGCTGTATGGTCTCATTGTAGCGCTCATCCTCAGCCAGCAGAGCTACTC
GTGCGCGTAATCGCCGCGCGAAACCGCCGCGAAACCGCCGCCGCCTCGCT
CGCGTGCGCCGCGCGGCGCTAGACCGGGAGCGATGCTAGGCCGATACTAC
CCGACCAATTGCTGCCCTACCCCCTAGCCCCCCTCGTTTCGCCCCCCTGT
TTCCCCTTCCGCCGCCCCCTCACCCCCCCTGCTGCCGCTCAGTCAATGTG
CGCCACGCCTCTGGTGTGGATTCACTCGTTGGTGGCAGCAGCAGGGGCGT
TTGCTAGGTGGGATAGGAATCGGGGTGCACTTTTCAGAGTTGTGCGAGCC
AGCGTACGGACATGCACGCCTGCTTTAGAGCCCCTCTATGCTCGGGGTTT
TCATAGGGGGGCGCGTTTGGCTGTGGCGCTGCGCAGCTTGCTGCTAGACT
GCAGCCCTCTCTCTGGTTTTGTCGGCACTCAACGGTGTCTGCGTGTGTGT
TTGTGGGTGCCGGCTTTGCGTGTTTTGCGCTGAGGGCATGGGAGGGGGA
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protein sequence of jgi.p|Trimin1|352553

>Trimin1|352553|estExt_Genemark1.C_Ctg_1230033 ID=Trimin1|352553|estExt_Genemark1.C_Ctg_1230033|Name=jgi.p|Trimin1|352553|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=169bp
MSSSLETCPSSAAFFGFMGTAAALVFSNIGAAYGTAKSGVGISSMGVMNP
GLVMRNIIPVVMAGVLGIYGLIVAVILQGSITQPDTEQNTKFSSFSGYAF
LAAGLCCGLSGLAAGMAIGIVGDAGVRAVGQQERLFVGMILILIFAEALA
LYGLIVALILSQQSYSCA*
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mRNA from alignment at Contig_123:245610..248759+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14494 ID=mRNA_14494|Name=jgi.p|Trimin1|352553|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3150bp|location=Sequence derived from alignment at Contig_123:245610..248759+ (Tribonema minus UTEX_B_3156 )
GCGGAGAGCGTGCAGCGAGTGGCCGGCTGTCATCATAGACTCAATTGCAC
AGCTGTACGATAGCTTGCAGTCCCGTTCCTGGTCCGCCGCGCACAGGTGA
GCTCCAGCAAAGCCCCTTTCCGTTGCCTAACAGTTGCACGTGAGTAGGGC
GGGAGCGTTGCAATCAGGTACAGCATGGGTGCGGATATTGCGGCTCAATT
GAGATTTGCGTAACTGCATTAAGCCTTCTGCTGAGGTGCTTGCTCACCCT
TCCGCGCCAGGCGAAGCAGGATTTGCGTCCGACACCCTGGGTGCAGGTGC
AGATGCAAGAAGAAACTGCAAGATCGCCAGGCGCATACGCAATGCAAGCC
TTCGCAACCACTGCACATGGTTCACCTGATCCTTTACTCGCACGTTCGGA
TCACACACACTATGTTCATCTCTGTACCCGTTCCCGCACACCCCGCTTGA
ACGATCTTGCGTGCTTGTGTCATTCAGAGATCGCTGATGCAATCGTGTGC
GCTGGCATTCCTGTATTGGCCGCCAGACACATCATGAGCTCATCATTGGA
GACGTGCCCTTCATCAGCGGCGTTCTTTGGTTTCATGGGGACAGCTGCGG
CGCTGGTGTTCTCAAGTGAGTTGTTCCACCGGGCCATGTAGCTGATCGCA
GTTTGTGTGCATCATGCTCGCTGCGCAATTTCAATCAGCTGGTTGCAAAC
ACAACACTTCAGAGCGAGCCACTGTTACAGCACATCTGATGCTGCTGTGT
GTGGCCAAGCTTATGCCCGCAACAGTCAGGTAATCAATGTTTTGGGATAG
GCCCCCAAAGCACTTGAACTTCCTTCACAAACCCAGGCGTTCAGGAGATA
GCAGCAACGCGGCCCCGGAACATATCGCATAGGAAAGGTACAGGAAGCAA
AGTGCTCAACACACCCGCTGCCACTGCAGCGCTGCTGATTTGAGGCGGTC
AATGACGCAACTTCGAGCCTTACAATTGTTGCCATTGTGGTGCACAATGC
AGGCTGCGGCGAGCGGCAACGTGGTTATTTGCGATTCACTGCCCGAGTCA
GTGCAGACCGCAGTATGAAATTATGCCACTGCAGACATGCCGTGTACTAC
AATACCGACTCATACTTCACCTTCTGGAACTTCACTTTTTTACAATGCAG
ACATTGGCGCGGCTTATGGCACTGCCAAGTCAGGCGTGGGTATCTCTTCC
ATGGGCGTGATGAACCCTGGTCTGGTGATGCGCAACATCATTCCCGTGGT
CATGGCGGGAGTGCTGGGTATCTATGGCCTGATCGTTGCTGTGATCCTGC
AGGTTAGTAGTGTGTTTAAATGGCTTTGTTATGGCAACAATAAACAATGT
TGGTATACATGTACACCCTGGGCTTCACTTCATACCTTCAAGTATATAAA
ACCAACATTATTGTGGAGGGAGTGCTAGCAACGCGGATGTGCAGGCGAGC
ATCGCACAACAATAGCCATAATGATACACAGATTTGCAGCACAGATGTAT
GACCAGCAATTTCTCATGCATATTCCAAAGTACACTGAGTTTCCACCCTA
CCATGGAAGCACTTTACGTAGTCTGTAATCGTTTGATGTAGTGTAGTACC
AGAGCACGCGTAAAGATTTGGGTGGCAGCGGCGCAGCGCGACAGCAGCGC
ATCATGTTGGATTTCGGTGCAAGCTGGGATCCGGATGACCTCTGCTGATG
CAGTACACAGTAACACTCTCATACAGTCCGCTGCAGATTTCAGTGAACTT
ACGGCCTCTAGGTACCTTGGCCAAAGCTGAGTGGGGGACTTTGGAAAATC
GATGATGATGATATTTTTTGTAGTGAGGCAGAAATGCTTGAGGATTTGAA
GAGGACGATAGAGCGTTTAGTTCTGCTTGGTTCTTGTAGTCAGGGCTGCA
GATGTCACGTTGTATGATCTTTGTTTGGGTTGAGACCATTGTATGTTGGT
ACATATACTGCCCACACCTCACAACGCGGTGCAATAGCCACAGCACACTT
GCCAGGGCACAAGCTGCATTGTTTACTTACATGTGAATGTTTGAGCGTAT
CAGTTCTCTGCTGAGCAACGCACACAGCACTGATTATTGTCTCCATACGC
GCGCAACTGTGATGGCTTGGCACTGCTCAACTCTCGCAACCCGACATGCC
CCAGTACCAGCAAAGCAATCTTCGACCTTTTCATCACTGGCTGCGCACTT
GTCGCACTCAACAGGGTTGCCTCACACTTGTCTTTCTCTATCAGAAGTAA
GTCTTTCGTGGGTGTGTCTTCACCCTACGTATGTAACATAACCCTAACCT
TGACCCTAACCCTAACCCTGGATGTGTCCTCGACACACTCCTCATTGACC
CGGTGCTGCCGCTCTTACATACCCCCACATCCCTCCAGGGCTCCATCACC
CAGCCCGACACGGAGCAGAACACCAAGTTCTCCTCCTTCTCCGGCTACGC
CTTCCTGGCAGCAGGCCTGTGCTGCGGCCTCAGCGGACTGGCGGCAGGCA
TGGCTATCGGCATCGTTGGCGACGCAGGCGTGCGCGCCGTTGGCCAACAG
GAGCGCCTCTTTGTGGGCATGATCCTCATTCTCATCTTCGCAGAGGCTCT
TGCGCTGTATGGTCTCATTGTAGCGCTCATCCTCAGCCAGCAGAGCTACT
CGTGCGCGTAATCGCCGCGCGAAACCGCCGCGAAACCGCCGCCGCCTCGC
TCGCGTGCGCCGCGCGGCGCTAGACCGGGAGCGATGCTAGGCCGATACTA
CCCGACCAATTGCTGCCCTACCCCCTAGCCCCCCTCGTTTCGCCCCCCTG
TTTCCCCTTCCGCCGCCCCCTCACCCCCCCTGCTGCCGCTCAGTCAATGT
GCGCCACGCCTCTGGTGTGGATTCACTCGTTGGTGGCAGCAGCAGGGGCG
TTTGCTAGGTGGGATAGGAATCGGGGTGCACTTTTCAGAGTTGTGCGAGC
CAGCGTACGGACATGCACGCCTGCTTTAGAGCCCCTCTATGCTCGGGGTT
TTCATAGGGGGGCGCGTTTGGCTGTGGCGCTGCGCAGCTTGCTGCTAGAC
TGCAGCCCTCTCTCTGGTTTTGTCGGCACTCAACGGTGTCTGCGTGTGTG
TTTGTGGGTGCCGGCTTTGCGTGTTTTGCGCTGAGGGCATGGGAGGGGGA
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Coding sequence (CDS) from alignment at Contig_123:245610..248759+

>mRNA_14494 ID=mRNA_14494|Name=jgi.p|Trimin1|352553|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=507bp|location=Sequence derived from alignment at Contig_123:245610..248759+ (Tribonema minus UTEX_B_3156 )
ATGAGCTCATCATTGGAGACGTGCCCTTCATCAGCGGCGTTCTTTGGTTT
CATGGGGACAGCTGCGGCGCTGGTGTTCTCAAACATTGGCGCGGCTTATG
GCACTGCCAAGTCAGGCGTGGGTATCTCTTCCATGGGCGTGATGAACCCT
GGTCTGGTGATGCGCAACATCATTCCCGTGGTCATGGCGGGAGTGCTGGG
TATCTATGGCCTGATCGTTGCTGTGATCCTGCAGGGCTCCATCACCCAGC
CCGACACGGAGCAGAACACCAAGTTCTCCTCCTTCTCCGGCTACGCCTTC
CTGGCAGCAGGCCTGTGCTGCGGCCTCAGCGGACTGGCGGCAGGCATGGC
TATCGGCATCGTTGGCGACGCAGGCGTGCGCGCCGTTGGCCAACAGGAGC
GCCTCTTTGTGGGCATGATCCTCATTCTCATCTTCGCAGAGGCTCTTGCG
CTGTATGGTCTCATTGTAGCGCTCATCCTCAGCCAGCAGAGCTACTCGTG
CGCGTAA
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