mRNA_13930 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352526
Unique NamemRNA_13930
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352526 vs. uniprot
Match: A0A835ZKW9_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZKW9_9STRA)

HSP 1 Score: 479 bits (1233), Expect = 5.330e-170
Identity = 270/270 (100.00%), Postives = 270/270 (100.00%), Query Frame = 2 
Query:    2 APEVSPPQEQQSQEQQNCDAHQAPSSDQLQLEDPDADLLGEHVHAAPSAVAVGELGAFARRALPPLFCIPYVGLVIPARRGDQRVYAVNALVIDEITATLRAARAADASAFAVDASPAAVLAAGARTEWTLGARVNEAPPGTPPNCVFITNVAGTDAQYRAAXXXXXXXXVPVAAALYVTTRAVAAGEELLGFYGNAAGYARPYALYADALSSEEGDAHAREQQRSADAAYAHITDARVFSQIGFLRRIAVPTAAAAREAADGTSAAAAP 811
            APEVSPPQEQQSQEQQNCDAHQAPSSDQLQLEDPDADLLGEHVHAAPSAVAVGELGAFARRALPPLFCIPYVGLVIPARRGDQRVYAVNALVIDEITATLRAARAADASAFAVDASPAAVLAAGARTEWTLGARVNEAPPGTPPNCVFITNVAGTDAQYRAAXXXXXXXXVPVAAALYVTTRAVAAGEELLGFYGNAAGYARPYALYADALSSEEGDAHAREQQRSADAAYAHITDARVFSQIGFLRRIAVPTAAAAREAADGTSAAAAP
Sbjct:    1 APEVSPPQEQQSQEQQNCDAHQAPSSDQLQLEDPDADLLGEHVHAAPSAVAVGELGAFARRALPPLFCIPYVGLVIPARRGDQRVYAVNALVIDEITATLRAARAADASAFAVDASPAAVLAAGARTEWTLGARVNEAPPGTPPNCVFITNVAGTDAQYRAAXXXXXXXXVPVAAALYVTTRAVAAGEELLGFYGNAAGYARPYALYADALSSEEGDAHAREQQRSADAAYAHITDARVFSQIGFLRRIAVPTAAAAREAADGTSAAAAP 270
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BLAST of jgi.p|Trimin1|352526 vs. uniprot
Match: A0A836CNE3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CNE3_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 7.590e-20
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 2 
Query:    2 WCTPARCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWREQQCWSSSRGCCAAPANTRSGQGTLGALLHTVAIGN 319
            WCTPARCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWREQQCWSSSRGCCAAPANTRSGQGTLGALLHTVAIGN
Sbjct:    1 WCTPARCAGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWREQQCWSSSRGCCAAPANTRSGQGTLGALLHTVAIGN 106
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352526 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835ZKW9_9STRA5.330e-170100.00Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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BLAST of jgi.p|Trimin1|352526 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CNE3_9STRA7.590e-20100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:283836..285610 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352526|estExt_Genemark1.C_Ctg_1220032
Hectar predicted targeting categoryother localisation
TranscriptId352848
TrackFilteredModels1
ProteinId352526
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352526gene_13930Tribonema minus UTEX_B_3156 geneContig_122 283836..285610 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352526Trimin1|352526|estExt_Genemark1.C_Ctg_1220032Tribonema minus UTEX_B_3156 polypeptideContig_122 283836..285609 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13930_3exon_13930_3Tribonema minus UTEX_B_3156 exonContig_122 283836..284396 -
exon_13930_2exon_13930_2Tribonema minus UTEX_B_3156 exonContig_122 284875..285060 -
exon_13930_1exon_13930_1Tribonema minus UTEX_B_3156 exonContig_122 285544..285610 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13930CDS_13930Tribonema minus UTEX_B_3156 CDSContig_122 285544..285609 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13930UTR5_13930Tribonema minus UTEX_B_3156 five_prime_UTRContig_122 285610..285610 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13930 ID=mRNA_13930|Name=jgi.p|Trimin1|352526|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=814bp|location=Sequence derived from alignment at Contig_122:283836..285610- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CGCACCTGAGGTATCTCCACCGCAAGAGCAGCAGTCACAGGAGCAACAAA
ACTGCGACGCCCACCAGGCGCCGTCGTCAGATCAACTTCAACTTGAAGAT
CCAGATGCGGACCTCCTAGGCGAACACGTGCACGCGGCGCCGTCGGCAGT
TGCGGTTGGCGAGCTGGGCGCGTTTGCGCGACGAGCACTGCCACCTTTAT
TCTGCATCCCCTACGTGGGCCTGGTCATCCCCGCACGGCGCGGCGATCAA
CGAGTTTACGCGGTGAACGCGCTGGTGATCGATGAGATCACGGCCACGCT
GCGCGCCGCGCGCGCCGCCGACGCCTCCGCGTTCGCCGTGGACGCCTCCC
CCGCAGCAGTGCTCGCCGCGGGCGCGCGCACGGAGTGGACGCTTGGCGCG
CGCGTCAACGAGGCCCCCCCGGGAACCCCCCCCAACTGCGTCTTCATCAC
CAACGTCGCGGGTACGGATGCGCAGTACCGCGCAGCGGCGGCGGCAGGGG
GGTCAGGGGGGGTTCCGGTGGCGGCGGCGCTGTACGTGACGACGCGCGCG
GTGGCGGCGGGCGAGGAGCTGCTGGGGTTCTACGGAAACGCCGCGGGGTA
CGCGCGGCCGTACGCGCTGTATGCGGACGCGCTGAGCAGCGAGGAGGGGG
ACGCGCACGCGCGCGAGCAGCAGCGCTCCGCGGATGCCGCGTACGCGCAC
ATCACCGACGCGCGCGTGTTCAGTCAGATCGGGTTCCTCAGGCGCATCGC
CGTGCCCACCGCCGCGGCGGCGCGCGAGGCGGCGGACGGCACGAGCGCTG
CAGCGGCGCCATGA
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protein sequence of jgi.p|Trimin1|352526

>Trimin1|352526|estExt_Genemark1.C_Ctg_1220032 ID=Trimin1|352526|estExt_Genemark1.C_Ctg_1220032|Name=jgi.p|Trimin1|352526|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=271bp
APEVSPPQEQQSQEQQNCDAHQAPSSDQLQLEDPDADLLGEHVHAAPSAV
AVGELGAFARRALPPLFCIPYVGLVIPARRGDQRVYAVNALVIDEITATL
RAARAADASAFAVDASPAAVLAAGARTEWTLGARVNEAPPGTPPNCVFIT
NVAGTDAQYRAAAAAGGSGGVPVAAALYVTTRAVAAGEELLGFYGNAAGY
ARPYALYADALSSEEGDAHAREQQRSADAAYAHITDARVFSQIGFLRRIA
VPTAAAAREAADGTSAAAAP*
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mRNA from alignment at Contig_122:283836..285610-

Legend: exonfive_prime_UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13930 ID=mRNA_13930|Name=jgi.p|Trimin1|352526|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1775bp|location=Sequence derived from alignment at Contig_122:283836..285610- (Tribonema minus UTEX_B_3156 )
CGCACCTGAGGTATCTCCACCGCAAGAGCAGCAGTCACAGGAGCAACAAA
ACTGCGACGCCCACCAGGTGCGTGCCTTGTTACCTGCGTCTGGCCTCAAC
GTCACTCGCGTCTTCGCCTGCAGCAGTAATGCGGTTTCCTCGAAGTGCCA
CACATAATCGATTACCATACAACGTGCATCACGTGAATATGCAATGGCCG
TAAGTATGCAATAGTTGCACTCATAGACACATTTGTTTGTGAAGCCCAAA
GAAAAGCCTGGTGTGTCCTGTGTGTGCTCCTAAGGTTTACGCCAGCCTCA
TACTGCTCTCACAGACCCTGAATGCTGAGCCCTGCTGACGCGGGGGCACA
TGAGCAGGCTGCAACGGTCTGCTGAGGGCATGATGATATGATTTATCTGC
CAGCACACATTGGTGCTGTTGCATGGCCGACATAGGGTTAGGGGTAGGCT
CAGCCTTAGGGTCAGGGTTAGGTTTGGCCCACACCCCCACACACAGCTCA
CTCGCTGATGATGCTTCGCAATGCTGCTGATGCTCAACCCCCCCCACCAG
GCGCCGTCGTCAGATCAACTTCAACTTGAAGATCCAGATGCGGACCTCCT
AGGCGAACACGTGCACGCGGCGCCGTCGGCAGTTGCGGTTGGCGAGCTGG
GCGCGTTTGCGCGACGAGCACTGCCACCTTTATTCTGCATCCCCTACGTG
GGCCTGGTCATCCCCGCACGGCGCGGCGATCAACGAGTGAGTACACGCCC
AGTACGCCAGCAGTACAAGCGAGGGTGATTTTTACAACAAGGAGCACTGT
ACACCACCAGTACACCAGCAGTACAAGCGAGGTTTGTTGTGTTCATCAAG
GAGTACACCACCAGCAGCTGCATTGTGGGTTGCGCAGGGCGTGCCGCCAT
TCTTTTTCATGAAGCTAGCCTACCTAGCCGTAACTCTAAGCAGGACTCAG
ACCTTGCGCCGATGCGCGCCGCAAACCTAAAACCCTAATTTCAAGAAACT
GTAACACTACCCCTTACCTCAAACCCTGTGTGCTTCGCAGGTTTACGTGT
TGAATGCGCTCTGGTGCTCAACGAGGATACCACGGCGTTAAGCCCATTCT
GACCCAACCATGTGCGCTCCGTAGGCGTTCGCGGCAATCGCGCTGCCACG
GACGCTAACCCTCACTTCGCCCCTGCCCTAACCCCATTTGAACCTAACCC
TGTGCGCTGCTCAGGTTTACGCGGTGAACGCGCTGGTGATCGATGAGATC
ACGGCCACGCTGCGCGCCGCGCGCGCCGCCGACGCCTCCGCGTTCGCCGT
GGACGCCTCCCCCGCAGCAGTGCTCGCCGCGGGCGCGCGCACGGAGTGGA
CGCTTGGCGCGCGCGTCAACGAGGCCCCCCCGGGAACCCCCCCCAACTGC
GTCTTCATCACCAACGTCGCGGGTACGGATGCGCAGTACCGCGCAGCGGC
GGCGGCAGGGGGGTCAGGGGGGGTTCCGGTGGCGGCGGCGCTGTACGTGA
CGACGCGCGCGGTGGCGGCGGGCGAGGAGCTGCTGGGGTTCTACGGAAAC
GCCGCGGGGTACGCGCGGCCGTACGCGCTGTATGCGGACGCGCTGAGCAG
CGAGGAGGGGGACGCGCACGCGCGCGAGCAGCAGCGCTCCGCGGATGCCG
CGTACGCGCACATCACCGACGCGCGCGTGTTCAGTCAGATCGGGTTCCTC
AGGCGCATCGCCGTGCCCACCGCCGCGGCGGCGCGCGAGGCGGCGGACGG
CACGAGCGCTGCAGCGGCGCCATGA
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Coding sequence (CDS) from alignment at Contig_122:283836..285610-

>mRNA_13930 ID=mRNA_13930|Name=jgi.p|Trimin1|352526|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=813bp|location=Sequence derived from alignment at Contig_122:283836..285610- (Tribonema minus UTEX_B_3156 )
GCACCTGAGGTATCTCCACCGCAAGAGCAGCAGTCACAGGAGCAACAAAA
CTGCGACGCCCACCAGGCGCCGTCGTCAGATCAACTTCAACTTGAAGATC
CAGATGCGGACCTCCTAGGCGAACACGTGCACGCGGCGCCGTCGGCAGTT
GCGGTTGGCGAGCTGGGCGCGTTTGCGCGACGAGCACTGCCACCTTTATT
CTGCATCCCCTACGTGGGCCTGGTCATCCCCGCACGGCGCGGCGATCAAC
GAGTTTACGCGGTGAACGCGCTGGTGATCGATGAGATCACGGCCACGCTG
CGCGCCGCGCGCGCCGCCGACGCCTCCGCGTTCGCCGTGGACGCCTCCCC
CGCAGCAGTGCTCGCCGCGGGCGCGCGCACGGAGTGGACGCTTGGCGCGC
GCGTCAACGAGGCCCCCCCGGGAACCCCCCCCAACTGCGTCTTCATCACC
AACGTCGCGGGTACGGATGCGCAGTACCGCGCAGCGGCGGCGGCAGGGGG
GTCAGGGGGGGTTCCGGTGGCGGCGGCGCTGTACGTGACGACGCGCGCGG
TGGCGGCGGGCGAGGAGCTGCTGGGGTTCTACGGAAACGCCGCGGGGTAC
GCGCGGCCGTACGCGCTGTATGCGGACGCGCTGAGCAGCGAGGAGGGGGA
CGCGCACGCGCGCGAGCAGCAGCGCTCCGCGGATGCCGCGTACGCGCACA
TCACCGACGCGCGCGTGTTCAGTCAGATCGGGTTCCTCAGGCGCATCGCC
GTGCCCACCGCCGCGGCGGCGCGCGAGGCGGCGGACGGCACGAGCGCTGC
AGCGGCGCCATGA
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