mRNA_13929 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|175191
Unique NamemRNA_13929
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A835ZAK9_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK9_9STRA)

HSP 1 Score: 315 bits (806), Expect = 7.090e-109
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
Query:    1 MSAAPSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITELCRARGLLPQ 450
            MSAAPSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITELCRARGLLPQ
Sbjct:    1 MSAAPSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITELCRARGLLPQ 150          
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A812NC81_9DINO (EHMT2 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812NC81_9DINO)

HSP 1 Score: 140 bits (354), Expect = 8.430e-40
Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 1
Query:   10 APSQDLEVRQSCI-AGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITE 420
            A S+ LEV  S + A AGLGLF   + + GE +C Y G      +A+R +DK+YLMR+GP+ Y+DA  D    ++ARYINDCRNPA +NV+F+K+PG     A+VVA R I AGEELFVDYGRWYWA LRP R+ + +
Sbjct:   13 AGSKALEVAPSQLGAEAGLGLFVQQAVEPGEVLCEYRGRTFATAEAMRLEDKSYLMRVGPQEYIDARED--TSLVARYINDCRNPAVYNVSFEKRPGEG--RALVVACRPISAGEELFVDYGRWYWAKLRPVRIGVKQ 146          
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A6H5JWN1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN1_9PHAE)

HSP 1 Score: 138 bits (348), Expect = 4.370e-39
Identity = 71/132 (53.79%), Postives = 88/132 (66.67%), Query Frame = 1
Query:   16 SQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLS 411
            ++  E++QS I GAG GLF      AG  +C YTG  L   +ALR  DK+YLMRLGP+ YVDA    H +VMARYINDCRN + +NV F K P      A+VVAL+DI  G+E+FVDYGRWYW +L+P  L 
Sbjct:    9 TETFEIKQSSIPGAGQGLFAREHFTAGAVVCEYTGRQLRTVEALRAPDKSYLMRLGPQVYVDALD--HPEVMARYINDCRNSSLYNVAFRKLPQECK--ALVVALKDIQPGQEIFVDYGRWYWLSLKPTELG 136          
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A812PXG1_9DINO (FP1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812PXG1_9DINO)

HSP 1 Score: 136 bits (342), Expect = 2.760e-36
Identity = 77/144 (53.47%), Postives = 97/144 (67.36%), Query Frame = 1
Query:   10 APSQDLEVRQSCI-AGAGLGLFT----LGSRKA--GEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITE 420
            A S+ LEV  S + A AGLGLF     LG   A  GE +C Y G      +A+R +DK+YLMR+GP+ Y+DA  D    ++ARYINDCRNPA +NV+F+K+PG     A+VVA R I AGEELFVDYGRWYWA LRP R+ + +
Sbjct:  158 AGSKALEVAPSRLGAEAGLGLFVQQACLGIEAAAPGEVLCEYRGRTFTTAEAMRLEDKSYLMRVGPQEYIDARED--TSLLARYINDCRNPAVYNVSFEKRPGEG--RALVVACRPIAAGEELFVDYGRWYWAKLRPVRIGVKQ 297          
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A7S2SN98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN98_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.360e-36
Identity = 74/131 (56.49%), Postives = 87/131 (66.41%), Query Frame = 1
Query:   31 VRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITEL 423
            VR S I GAG GLF      AG  +C YTG  L  R+A+R +DKAYLMRLGP+ YVDAA D    ++ARYINDCRN    N TF KQP      A+VVALRD+  GEE+FVDYG+ YWAA  P +LS  +L
Sbjct:    1 VRPSGIPGAGSGLFAAKRFHAGSLVCVYTGEVLATREAIRLQDKAYLMRLGPQVYVDAAKD--TTILARYINDCRNFRATNATFVKQPDQH--RALVVALRDLSPGEEIFVDYGKRYWAAGAPTKLSDRQL 127          
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A813K6C3_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K6C3_POLGL)

HSP 1 Score: 134 bits (336), Expect = 1.070e-35
Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 1
Query:    4 SAAPSQDLEVRQSCIA-GAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITE 420
            +A PS  LEVR S +  G G GLF L +    + IC Y G       A+R  DK+YLMRLGP+ Y+DA    H  V+ARYINDCRNPA  NV F+K PG     A+V+A R IGAGEELFVDYG+WYWA  RP R+ + +
Sbjct:   37 NALPSGALEVRPSSLGPGTGDGLFVLEAVPVAQLICEYRGDLHCTAQAIRLVDKSYLMRLGPQEYIDARC--HESVLARYINDCRNPAVQNVRFEKLPGEG--RALVIAQRAIGAGEELFVDYGKWYWADARPHRIPVRQ 172          
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A816DKB5_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A816DKB5_9BILA)

HSP 1 Score: 126 bits (317), Expect = 1.160e-34
Identity = 70/130 (53.85%), Postives = 80/130 (61.54%), Query Frame = 1
Query:   22 DLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLS 411
            DLEV+ S I GAG GLFT      G  +C Y+G  L   DA+R KDK+YLMRLGP+ YVD   D    V+ RYIND RN    NV FDK+P      A V+A RDI AGEE+F DYGRWYW    P RL 
Sbjct:    3 DLEVKSSQIEGAGCGLFTRTPIAKGSCVCIYSGKVLRTVDAIRLKDKSYLMRLGPQVYVDPFDD--KTVLGRYINDPRNRLLQNVIFDKRP--EEQCAYVIAKRDIAAGEEIFADYGRWYWLTTTPNRLE 128          
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A8K1CV77_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CV77_PYTOL)

HSP 1 Score: 127 bits (318), Expect = 1.440e-34
Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 1
Query:   25 LEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAA 390
            +E+R S I GAG+GLF   + K G+ +C Y GT    + A +  DKAYLM+LG   YVDA    H +V+ARYINDCR  A +NV FDK+P  S   A+V+ALRDIG  EEL+VDYGR+YW A
Sbjct:   24 VEMRPSLIPGAGMGLFATRAHKRGDVVCEYVGTIFPNKVAWKRTDKAYLMKLGEGKYVDALE--HPEVLARYINDCRRRAEYNVVFDKRP--SEDRALVIALRDIGVDEELYVDYGRFYWIA 141          
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A814YM84_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A814YM84_9BILA)

HSP 1 Score: 123 bits (309), Expect = 1.840e-33
Identity = 68/130 (52.31%), Postives = 78/130 (60.00%), Query Frame = 1
Query:   22 DLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLS 411
            DLEV+ S I GAG GLFT      G  +C Y G  L   +A+R KDK+YLMRLGP+ YVD   D    V+ RYIND RN    NV FDK+P     H  V+A RDI  GEE+F DYGRWYW    P RL 
Sbjct:    3 DLEVKPSQIEGAGSGLFTRTPIAKGSCVCIYRGKILRTIEAIRLKDKSYLMRLGPQVYVDPCDD--KTVLGRYINDPRNRLLQNVVFDKRPEEQCAH--VIAKRDIATGEEIFADYGRWYWLTKTPTRLE 128          
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A7S1TT44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TT44_9STRA)

HSP 1 Score: 125 bits (313), Expect = 2.930e-33
Identity = 69/141 (48.94%), Postives = 90/141 (63.83%), Query Frame = 1
Query:   13 PSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQ--RLSITELCR 429
            P++ L V  S I GAGLGLFT      G+ +C Y G +    +AL+  DK+YLMR+GP+CYVDA  D    V+ARY+ND RNP  +NVTFDK+P      A+VVA RD+ AG EL+VDYG  YWA   P   +L ++ + R
Sbjct:   27 PAEHLRVGDSDIPGAGLGLFTRVRIAEGQVVCIYRGVNYTTSEALKITDKSYLMRMGPQCYVDARED--ETVLARYVNDPRNPLLYNVTFDKRPDEGI--ALVVASRDVFAGAELYVDYGGMYWAGHDPPPGKLKLSVVLR 163          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZAK9_9STRA7.090e-109100.00SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A812NC81_9DINO8.430e-4053.62EHMT2 protein n=1 Tax=Symbiodinium sp. CCMP2456 Ta... [more]
A0A6H5JWN1_9PHAE4.370e-3953.79SET domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A812PXG1_9DINO2.760e-3653.47FP1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxI... [more]
A0A7S2SN98_9STRA5.360e-3656.49Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A813K6C3_POLGL1.070e-3552.86Hypothetical protein n=3 Tax=Polarella glacialis T... [more]
A0A816DKB5_9BILA1.160e-3453.85Hypothetical protein n=4 Tax=Rotaria TaxID=231623 ... [more]
A0A8K1CV77_PYTOL1.440e-3454.10Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A814YM84_9BILA1.840e-3352.31Hypothetical protein n=2 Tax=Rotaria sordida TaxID... [more]
A0A7S1TT44_9STRA2.930e-3348.94Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_122contigContig_122:281566..282190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|175191|e_gw1.122.46.1
DescriptionSET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
COG categoryS
Max annot lvl4776|Peronosporales
EggNOG OGs2C3YR@1|root,2S6K8@2759|Eukaryota,3QFRG@4776|Peronosporales
Evalue1.45e-30
Seed ortholog164328.Phyra81205
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSET domain protein
Ec32 orthologEc-20_002460.1
TranscriptId175513
TrackFilteredModels1
ProteinId175191
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175191gene_13929Tribonema minus UTEX_B_3156 geneContig_122 281566..282190 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13929_1exon_13929_1Tribonema minus UTEX_B_3156 exonContig_122 281566..281936 +
exon_13929_2exon_13929_2Tribonema minus UTEX_B_3156 exonContig_122 282109..282190 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13929CDS_13929Tribonema minus UTEX_B_3156 CDSContig_122 281566..281936 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|175191Trimin1|175191|e_gw1.122.46.1Tribonema minus UTEX_B_3156 polypeptideContig_122 281566..282190 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13929 ID=mRNA_13929|Name=jgi.p|Trimin1|175191|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_122:281566..282190+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGCTGCGCCGTCGCAGGATTTGGAGGTCAGACAATCATGTATAGC
AGGCGCAGGGCTAGGCCTCTTCACCCTGGGCTCGCGCAAGGCAGGTGAAC
ATATCTGCACCTACACAGGCACGCACCTTGGGCTCAGGGATGCCCTGAGA
GGCAAAGATAAAGCCTACCTCATGAGGCTGGGCCCGAGGTGCTACGTGGA
TGCTGCTGGGGACGGACACGCGGACGTCATGGCTCGCTATATCAATGACT
GCCGCAACCCTGCGGGCTTCAATGTCACGTTCGACAAGCAGCCAGGTGCC
TCCCCGCCACATGCAGTGGTGGTTGCGCTGCGAGACATCGGCGCAGGCGA
AGAGCTTTTTGTGGACTACGGGCGGTGGTACTGGGCTGCACTGAGACCAC
AGAGGCTATCCATCACCGAACTGTGCCGGGCACGTGGCCTACTGCCACAG
TAG
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protein sequence of jgi.p|Trimin1|175191

>Trimin1|175191|e_gw1.122.46.1 ID=Trimin1|175191|e_gw1.122.46.1|Name=jgi.p|Trimin1|175191|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp
MSAAPSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALR
GKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGA
SPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITELCRARGLLPQ
*
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mRNA from alignment at Contig_122:281566..282190+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13929 ID=mRNA_13929|Name=jgi.p|Trimin1|175191|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=625bp|location=Sequence derived from alignment at Contig_122:281566..282190+ (Tribonema minus UTEX_B_3156 )
ATGTCTGCTGCGCCGTCGCAGGATTTGGAGGTCAGACAATCATGTATAGC AGGCGCAGGGCTAGGCCTCTTCACCCTGGGCTCGCGCAAGGCAGGTGAAC ATATCTGCACCTACACAGGCACGCACCTTGGGCTCAGGGATGCCCTGAGA GGCAAAGATAAAGCCTACCTCATGAGGCTGGGCCCGAGGTGCTACGTGGA TGCTGCTGGGGACGGACACGCGGACGTCATGGCTCGCTATATCAATGACT GCCGCAACCCTGCGGGCTTCAATGTCACGTTCGACAAGCAGCCAGGTGCC TCCCCGCCACATGCAGTGGTGGTTGCGCTGCGAGACATCGGCGCAGGCGA AGAGCTTTTTGTGGACTACGGGTGAGCTTGAGAGAGCTCTATTTGCGCTT GCCTGCCTGCCTGCCAAGTGCGTCAGCACCCACTGATTGCTGGGAGGGGC ATCAGCCTCAGACTGGCCTATGCGCAGTAATATTACTGTGCCAGACACAA CCTACTAGTAAACCTGTGCATGTCTTCTCGCCCACAAATGCAGGCGGTGG TACTGGGCTGCACTGAGACCACAGAGGCTATCCATCACCGAACTGTGCCG GGCACGTGGCCTACTGCCACAGTAG
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Coding sequence (CDS) from alignment at Contig_122:281566..282190+

>mRNA_13929 ID=mRNA_13929|Name=jgi.p|Trimin1|175191|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_122:281566..282190+ (Tribonema minus UTEX_B_3156 )
ATGTCTGCTGCGCCGTCGCAGGATTTGGAGGTCAGACAATCATGTATAGC
AGGCGCAGGGCTAGGCCTCTTCACCCTGGGCTCGCGCAAGGCAGGTGAAC
ATATCTGCACCTACACAGGCACGCACCTTGGGCTCAGGGATGCCCTGAGA
GGCAAAGATAAAGCCTACCTCATGAGGCTGGGCCCGAGGTGCTACGTGGA
TGCTGCTGGGGACGGACACGCGGACGTCATGGCTCGCTATATCAATGACT
GCCGCAACCCTGCGGGCTTCAATGTCACGTTCGACAAGCAGCCAGGTGCC
TCCCCGCCACATGCAGTGGTGGTTGCGCTGCGAGACATCGGCGCAGGCGA
AGAGCTTTTTGTGGACTACGGGCGGTGGTACTGGGCTGCACTGAGACCAC
AGAGGCTATCCATCACCGAACTGTGCCGGGCACGTGGCCTACTGCCACAG
TAG
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