mRNA_13929 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A835ZAK9_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAK9_9STRA) HSP 1 Score: 315 bits (806), Expect = 7.090e-109 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 1
Query: 1 MSAAPSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITELCRARGLLPQ 450
MSAAPSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITELCRARGLLPQ
Sbjct: 1 MSAAPSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITELCRARGLLPQ 150
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A812NC81_9DINO (EHMT2 protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812NC81_9DINO) HSP 1 Score: 140 bits (354), Expect = 8.430e-40 Identity = 74/138 (53.62%), Postives = 96/138 (69.57%), Query Frame = 1
Query: 10 APSQDLEVRQSCI-AGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITE 420
A S+ LEV S + A AGLGLF + + GE +C Y G +A+R +DK+YLMR+GP+ Y+DA D ++ARYINDCRNPA +NV+F+K+PG A+VVA R I AGEELFVDYGRWYWA LRP R+ + +
Sbjct: 13 AGSKALEVAPSQLGAEAGLGLFVQQAVEPGEVLCEYRGRTFATAEAMRLEDKSYLMRVGPQEYIDARED--TSLVARYINDCRNPAVYNVSFEKRPGEG--RALVVACRPISAGEELFVDYGRWYWAKLRPVRIGVKQ 146
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A6H5JWN1_9PHAE (SET domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWN1_9PHAE) HSP 1 Score: 138 bits (348), Expect = 4.370e-39 Identity = 71/132 (53.79%), Postives = 88/132 (66.67%), Query Frame = 1
Query: 16 SQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLS 411
++ E++QS I GAG GLF AG +C YTG L +ALR DK+YLMRLGP+ YVDA H +VMARYINDCRN + +NV F K P A+VVAL+DI G+E+FVDYGRWYW +L+P L
Sbjct: 9 TETFEIKQSSIPGAGQGLFAREHFTAGAVVCEYTGRQLRTVEALRAPDKSYLMRLGPQVYVDALD--HPEVMARYINDCRNSSLYNVAFRKLPQECK--ALVVALKDIQPGQEIFVDYGRWYWLSLKPTELG 136
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A812PXG1_9DINO (FP1 protein n=1 Tax=Symbiodinium sp. CCMP2592 TaxID=631055 RepID=A0A812PXG1_9DINO) HSP 1 Score: 136 bits (342), Expect = 2.760e-36 Identity = 77/144 (53.47%), Postives = 97/144 (67.36%), Query Frame = 1
Query: 10 APSQDLEVRQSCI-AGAGLGLFT----LGSRKA--GEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITE 420
A S+ LEV S + A AGLGLF LG A GE +C Y G +A+R +DK+YLMR+GP+ Y+DA D ++ARYINDCRNPA +NV+F+K+PG A+VVA R I AGEELFVDYGRWYWA LRP R+ + +
Sbjct: 158 AGSKALEVAPSRLGAEAGLGLFVQQACLGIEAAAPGEVLCEYRGRTFTTAEAMRLEDKSYLMRVGPQEYIDARED--TSLLARYINDCRNPAVYNVSFEKRPGEG--RALVVACRPIAAGEELFVDYGRWYWAKLRPVRIGVKQ 297
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A7S2SN98_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN98_9STRA) HSP 1 Score: 135 bits (341), Expect = 5.360e-36 Identity = 74/131 (56.49%), Postives = 87/131 (66.41%), Query Frame = 1
Query: 31 VRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITEL 423
VR S I GAG GLF AG +C YTG L R+A+R +DKAYLMRLGP+ YVDAA D ++ARYINDCRN N TF KQP A+VVALRD+ GEE+FVDYG+ YWAA P +LS +L
Sbjct: 1 VRPSGIPGAGSGLFAAKRFHAGSLVCVYTGEVLATREAIRLQDKAYLMRLGPQVYVDAAKD--TTILARYINDCRNFRATNATFVKQPDQH--RALVVALRDLSPGEEIFVDYGKRYWAAGAPTKLSDRQL 127
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A813K6C3_POLGL (Hypothetical protein n=3 Tax=Polarella glacialis TaxID=89957 RepID=A0A813K6C3_POLGL) HSP 1 Score: 134 bits (336), Expect = 1.070e-35 Identity = 74/140 (52.86%), Postives = 90/140 (64.29%), Query Frame = 1
Query: 4 SAAPSQDLEVRQSCIA-GAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLSITE 420
+A PS LEVR S + G G GLF L + + IC Y G A+R DK+YLMRLGP+ Y+DA H V+ARYINDCRNPA NV F+K PG A+V+A R IGAGEELFVDYG+WYWA RP R+ + +
Sbjct: 37 NALPSGALEVRPSSLGPGTGDGLFVLEAVPVAQLICEYRGDLHCTAQAIRLVDKSYLMRLGPQEYIDARC--HESVLARYINDCRNPAVQNVRFEKLPGEG--RALVIAQRAIGAGEELFVDYGKWYWADARPHRIPVRQ 172
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A816DKB5_9BILA (Hypothetical protein n=4 Tax=Rotaria TaxID=231623 RepID=A0A816DKB5_9BILA) HSP 1 Score: 126 bits (317), Expect = 1.160e-34 Identity = 70/130 (53.85%), Postives = 80/130 (61.54%), Query Frame = 1
Query: 22 DLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLS 411
DLEV+ S I GAG GLFT G +C Y+G L DA+R KDK+YLMRLGP+ YVD D V+ RYIND RN NV FDK+P A V+A RDI AGEE+F DYGRWYW P RL
Sbjct: 3 DLEVKSSQIEGAGCGLFTRTPIAKGSCVCIYSGKVLRTVDAIRLKDKSYLMRLGPQVYVDPFDD--KTVLGRYINDPRNRLLQNVIFDKRP--EEQCAYVIAKRDIAAGEEIFADYGRWYWLTTTPNRLE 128
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A8K1CV77_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CV77_PYTOL) HSP 1 Score: 127 bits (318), Expect = 1.440e-34 Identity = 66/122 (54.10%), Postives = 83/122 (68.03%), Query Frame = 1
Query: 25 LEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAA 390
+E+R S I GAG+GLF + K G+ +C Y GT + A + DKAYLM+LG YVDA H +V+ARYINDCR A +NV FDK+P S A+V+ALRDIG EEL+VDYGR+YW A
Sbjct: 24 VEMRPSLIPGAGMGLFATRAHKRGDVVCEYVGTIFPNKVAWKRTDKAYLMKLGEGKYVDALE--HPEVLARYINDCRRRAEYNVVFDKRP--SEDRALVIALRDIGVDEELYVDYGRFYWIA 141
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A814YM84_9BILA (Hypothetical protein n=2 Tax=Rotaria sordida TaxID=392033 RepID=A0A814YM84_9BILA) HSP 1 Score: 123 bits (309), Expect = 1.840e-33 Identity = 68/130 (52.31%), Postives = 78/130 (60.00%), Query Frame = 1
Query: 22 DLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQRLS 411
DLEV+ S I GAG GLFT G +C Y G L +A+R KDK+YLMRLGP+ YVD D V+ RYIND RN NV FDK+P H V+A RDI GEE+F DYGRWYW P RL
Sbjct: 3 DLEVKPSQIEGAGSGLFTRTPIAKGSCVCIYRGKILRTIEAIRLKDKSYLMRLGPQVYVDPCDD--KTVLGRYINDPRNRLLQNVVFDKRPEEQCAH--VIAKRDIATGEEIFADYGRWYWLTKTPTRLE 128
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Match: A0A7S1TT44_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TT44_9STRA) HSP 1 Score: 125 bits (313), Expect = 2.930e-33 Identity = 69/141 (48.94%), Postives = 90/141 (63.83%), Query Frame = 1
Query: 13 PSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRGKDKAYLMRLGPRCYVDAAGDGHADVMARYINDCRNPAGFNVTFDKQPGASPPHAVVVALRDIGAGEELFVDYGRWYWAALRPQ--RLSITELCR 429
P++ L V S I GAGLGLFT G+ +C Y G + +AL+ DK+YLMR+GP+CYVDA D V+ARY+ND RNP +NVTFDK+P A+VVA RD+ AG EL+VDYG YWA P +L ++ + R
Sbjct: 27 PAEHLRVGDSDIPGAGLGLFTRVRIAEGQVVCIYRGVNYTTSEALKITDKSYLMRMGPQCYVDARED--ETVLARYVNDPRNPLLYNVTFDKRPDEGI--ALVVASRDVFAGAELYVDYGGMYWAGHDPPPGKLKLSVVLR 163 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|175191 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13929 ID=mRNA_13929|Name=jgi.p|Trimin1|175191|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=453bp|location=Sequence derived from alignment at Contig_122:281566..282190+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTCTGCTGCGCCGTCGCAGGATTTGGAGGTCAGACAATCATGTATAGCback to top protein sequence of jgi.p|Trimin1|175191 >Trimin1|175191|e_gw1.122.46.1 ID=Trimin1|175191|e_gw1.122.46.1|Name=jgi.p|Trimin1|175191|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=151bp MSAAPSQDLEVRQSCIAGAGLGLFTLGSRKAGEHICTYTGTHLGLRDALRback to top mRNA from alignment at Contig_122:281566..282190+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13929 ID=mRNA_13929|Name=jgi.p|Trimin1|175191|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=625bp|location=Sequence derived from alignment at Contig_122:281566..282190+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_122:281566..282190+ >mRNA_13929 ID=mRNA_13929|Name=jgi.p|Trimin1|175191|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=453bp|location=Sequence derived from alignment at Contig_122:281566..282190+ (Tribonema minus UTEX_B_3156 )back to top |