mRNA_12241 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|339873
Unique Name	mRNA_12241
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A835YGA3_9STRA (HSF-type DNA-binding-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YGA3_9STRA)

HSP 1 Score: 701 bits (1810), Expect = 3.500e-247
Identity = 500/500 (100.00%), Postives = 500/500 (100.00%), Query Frame = 1

Query:    1 MEPGDEESEVQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKTETVDDGVPEYVPASRSRMGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVSAELYTSPAQLQVMAGGAVQQAAPEGYMPMAYPAMGLMEYSMLGIPQMGAFGGLLLPPGAMTSLAMQYXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPAQLQHMMVPQYAPYLYGQAFGQTPYGATAAVDAQMQMXXXMMGYAQAYAPPAMGGGYAQGAVAEGXXXXXXXXXMTAEQQQXXXXXXAMQAVQQQQAIMQAQVAHNGGGSGDSSDATSRSGSDGAAQRPQSQLTAAMSVADMXXXXXXXXXXXXXXXLPPQAGLREAGSGGVQALSLFGQEGRGRAAGGARASAAAAT 1500
            MEPGDEESEVQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKTETVDDGVPEYVPASRSRMGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVSAELYTSPAQLQVMAGGAVQQAAPEGYMPMAYPAMGLMEYSMLGIPQMGAFGGLLLPPGAMTSLAMQYXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPAQLQHMMVPQYAPYLYGQAFGQTPYGATAAVDAQMQMXXXMMGYAQAYAPPAMGGGYAQGAVAEGXXXXXXXXXMTAEQQQXXXXXXAMQAVQQQQAIMQAQVAHNGGGSGDSSDATSRSGSDGAAQRPQSQLTAAMSVADMXXXXXXXXXXXXXXXLPPQAGLREAGSGGVQALSLFGQEGRGRAAGGARASAAAAT
Sbjct:    1 MEPGDEESEVQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKTETVDDGVPEYVPASRSRMGSAAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAVSAELYTSPAQLQVMAGGAVQQAAPEGYMPMAYPAMGLMEYSMLGIPQMGAFGGLLLPPGAMTSLAMQYXXXXXXXXXXXXXXXXXXXXXXXXXXXAQPAQLQHMMVPQYAPYLYGQAFGQTPYGATAAVDAQMQMXXXMMGYAQAYAPPAMGGGYAQGAVAEGXXXXXXXXXMTAEQQQXXXXXXAMQAVQQQQAIMQAQVAHNGGGSGDSSDATSRSGSDGAAQRPQSQLTAAMSVADMXXXXXXXXXXXXXXXLPPQAGLREAGSGGVQALSLFGQEGRGRAAGGARASAAAAT 500

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2BSE7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BSE7_9STRA)

HSP 1 Score: 129 bits (324), Expect = 2.010e-31
Identity = 62/110 (56.36%), Postives = 78/110 (70.91%), Query Frame = 1

Query:   46 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQA 375
            +YPR G+RGAPQ F  KL+E+LS E  DI+ WT SG +F I +ME F +  L+KYF+H   +SFQRQLNLYGFRK  KG D G + H  F RD+PELL +VRR  Q++ A
Sbjct:    2 KYPRTGRRGAPQVFPRKLYEILSTEREDIIGWTDSGKSFIIKEMETFVTNILMKYFRHQKYSSFQRQLNLYGFRKVQKGTDVGSYAHECFIRDQPELLTKVRRIPQSAGA 111

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2WKC6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WKC6_9STRA)

HSP 1 Score: 133 bits (335), Expect = 1.480e-30
Identity = 65/115 (56.52%), Postives = 84/115 (73.04%), Query Frame = 1

Query:   28 VQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQ 372
            V  D ++YPR GKRGAPQAFA KL+E+L  ES ++++W+ +G AF I DM+ F S+ L+KYF+H   +SFQRQLNLYGFRK+ KG+D GG+ H  F R R +LL  VRRT Q  Q
Sbjct:   66 VPGDQRKYPRTGKRGAPQAFAHKLYEILEAESTEVIAWSGTGRAFFIKDMDIFVSQVLLKYFRHVKYSSFQRQLNLYGFRKATKGQDVGGYYHHYFMRSRRDLLPFVRRTPQQPQ 180

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2WU52_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WU52_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.160e-30
Identity = 66/114 (57.89%), Postives = 81/114 (71.05%), Query Frame = 1

Query:   28 VQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQAS 369
            V    +RYPR GKRGAPQ FA KL+E+L NE PD +SWT SG +F I +M+ F +  L+KYF+H   +SFQRQLNLYGFRK  KG D+G + H SF R +PELL  VRR  Q+S
Sbjct:  150 VSGQTQRYPRTGKRGAPQVFARKLYEILDNEPPDAISWTTSGTSFVIKEMDAFVTCVLMKYFRHQKYSSFQRQLNLYGFRKISKGSDAGAYAHESFIRGQPELLHFVRRMPQSS 263

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2R5C8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2R5C8_9STRA)

HSP 1 Score: 134 bits (336), Expect = 8.150e-30
Identity = 67/120 (55.83%), Postives = 83/120 (69.17%), Query Frame = 1

Query:   34 NDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKTE 393
            +D  RYPR GKRGAPQ F  KL+E+L NES D +SWT SG +F I DME F +  L+KYF+H   +SFQRQLNLYGFRK  KG ++G + H  F RD+ + L  VRRT Q +  +K KTE
Sbjct:   60 SDAMRYPRTGKRGAPQVFPRKLYEILDNESEDTISWTESGHSFVIKDMETFVTSVLMKYFRHQKFSSFQRQLNLYGFRKISKGTETGAYCHEFFARDQTDKLRLVRRTPQVTGRSKAKTE 179

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2G7U9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G7U9_9STRA)

HSP 1 Score: 125 bits (314), Expect = 3.290e-29
Identity = 59/107 (55.14%), Postives = 76/107 (71.03%), Query Frame = 1

Query:   46 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQA 366
            +YPR G+RGAPQ F  KL+E+L+NE  D++ WT SG +F I +ME F +E L+ YF+H   +SFQRQLNLYGFRK  KG D+G + H  F RD+PE L  VRR  Q+
Sbjct:   94 KYPRTGRRGAPQVFPRKLYEILTNERSDVIGWTSSGKSFIILEMEIFVNEILMNYFRHQKYSSFQRQLNLYGFRKIQKGPDTGAYAHEHFLRDQPESLTFVRRMPQS 200

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7R9YBQ9_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YBQ9_9STRA)

HSP 1 Score: 131 bits (330), Expect = 3.680e-29
Identity = 67/119 (56.30%), Postives = 76/119 (63.87%), Query Frame = 1

Query:   28 VQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKR 384
            V  D KRYPR GKRGAPQ F  KLFELL  E   ++ W   G  F I DM+ FT E L +YFKH+   SFQRQLNLYGFRK  KGE  G + H  FQRD PE L +VRRT Q  ++  R
Sbjct:   41 VTEDYKRYPRTGKRGAPQVFPRKLFELLEKEDSAVIRWDEEGECFVIQDMDTFTRESLERYFKHHKFTSFQRQLNLYGFRKIAKGERCGYYVHPHFQRDHPEWLSKVRRTPQPGKSTPR 159

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A7S2CXJ7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CXJ7_9STRA)

HSP 1 Score: 128 bits (322), Expect = 8.230e-28
Identity = 66/143 (46.15%), Postives = 93/143 (65.03%), Query Frame = 1

Query:   46 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQASQAAKRKT-------ETVDDGVP-EYVPASRSRMGS 450
            +YPR G+RGAPQ F  KL+E+L+ ES DI+SWT +G +F I +M+ F +E L+KYF+H   +SFQRQLNLYGFRK  KG D+G + H  F RD    L++VRR  Q++   ++ T       +  +DG+  E +P S   +GS
Sbjct:   72 KYPRTGRRGAPQVFPRKLYEILTLESSDIISWTENGTSFVIQEMDDFVNEILMKYFRHRKYSSFQRQLNLYGFRKIQKGPDTGAYAHEGFLRDDESQLVKVRRWAQSAGRQQKPTLIRAQSKDITEDGLSKEGIPESPESVGS 214

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A6H5KMN3_9PHAE (HSF_DOMAIN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMN3_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.070e-27
Identity = 58/105 (55.24%), Postives = 79/105 (75.24%), Query Frame = 1

Query:   55 RFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQAS 369
            R GKRGAPQAFA KL E+L+ ES   +SW  +G AF++HD+E+F+ + L KY++H+  +SFQRQLNLY FRK +KG D+GG+ H  F+RDRP+ L  VRR++  S
Sbjct:   33 RIGKRGAPQAFARKLAEILATESTATISWNANGSAFQVHDVERFSEDILTKYYRHSKFSSFQRQLNLYSFRKIVKGADAGGYAHPMFRRDRPDDLYHVRRSISGS 137

[Close]

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Match: A0A6V1QFS1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1QFS1_HETAK)

HSP 1 Score: 125 bits (314), Expect = 2.730e-27
Identity = 57/108 (52.78%), Postives = 81/108 (75.00%), Query Frame = 1

Query:   46 RYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPSGLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGFQHASFQRDRPELLIEVRRTVQAS 369
            +YPR G+RGAPQAFA KL+E+L  E  D++SW  +G AF + D+++F+ E L+KYF+H+  ASFQRQLNLYGFRK  +G D+G + H  F++ +P+LL  VRR+  +S
Sbjct:    2 KYPRTGQRGAPQAFARKLYEILEVEPGDLLSWNAAGNAFFVRDIDRFSKEILMKYFRHSKFASFQRQLNLYGFRKITRGSDAGSYAHQYFRKGKPDLLSLVRRSQSSS 109

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|339873 vs. uniprot

BLAST of jgi.p|Trimin1|339873 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A835YGA3_9STRA	3.500e-247	100.00	HSF-type DNA-binding-domain-containing protein n=1...	[more]
A0A7S2BSE7_9STRA	2.010e-31	56.36	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A7S2WKC6_9STRA	1.480e-30	56.52	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2WU52_9STRA	6.160e-30	57.89	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2R5C8_9STRA	8.150e-30	55.83	Hypothetical protein n=1 Tax=Rhizochromulina marin...	[more]
A0A7S2G7U9_9STRA	3.290e-29	55.14	Hypothetical protein (Fragment) n=1 Tax=Florenciel...	[more]
A0A7R9YBQ9_9STRA	3.680e-29	56.30	Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi...	[more]
A0A7S2CXJ7_9STRA	8.230e-28	46.15	Hypothetical protein (Fragment) n=1 Tax=Dictyocha ...	[more]
A0A6H5KMN3_9PHAE	2.070e-27	55.24	HSF_DOMAIN domain-containing protein n=1 Tax=Ectoc...	[more]
A0A6V1QFS1_HETAK	2.730e-27	52.78	Hypothetical protein n=1 Tax=Heterosigma akashiwo ...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_99	contig	Contig_99:143319..149486 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|339873\|MIX48636_66_33
Description	sequence-specific DNA binding
COG category	K
Max annot lvl	2759\|Eukaryota
EggNOG OGs	COG5169@1\|root,KOG0627@2759\|Eukaryota
Evalue	1.79e-21
Seed ortholog	44056.XP_009034364.1
Hectar predicted targeting category	other localisation
TranscriptId	340195
Track	FilteredModels1
ProteinId	339873

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|339873	gene_12241	Tribonema minus UTEX_B_3156	gene	Contig_99 143319..149486 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|339873	Trimin1\|339873\|MIX48636_66_33	Tribonema minus UTEX_B_3156	polypeptide	Contig_99 143319..148914 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_12241_1	exon_12241_1	Tribonema minus UTEX_B_3156	exon	Contig_99 143319..143327 +
exon_12241_2	exon_12241_2	Tribonema minus UTEX_B_3156	exon	Contig_99 143452..143593 +
exon_12241_3	exon_12241_3	Tribonema minus UTEX_B_3156	exon	Contig_99 143697..143762 +
exon_12241_4	exon_12241_4	Tribonema minus UTEX_B_3156	exon	Contig_99 143984..144012 +
exon_12241_5	exon_12241_5	Tribonema minus UTEX_B_3156	exon	Contig_99 144407..144505 +
exon_12241_6	exon_12241_6	Tribonema minus UTEX_B_3156	exon	Contig_99 144987..145128 +
exon_12241_7	exon_12241_7	Tribonema minus UTEX_B_3156	exon	Contig_99 146183..146458 +
exon_12241_8	exon_12241_8	Tribonema minus UTEX_B_3156	exon	Contig_99 147414..147652 +
exon_12241_9	exon_12241_9	Tribonema minus UTEX_B_3156	exon	Contig_99 147752..147965 +
exon_12241_10	exon_12241_10	Tribonema minus UTEX_B_3156	exon	Contig_99 148628..149486 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_12241	CDS_12241	Tribonema minus UTEX_B_3156	CDS	Contig_99 143319..143327 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_12241	UTR3_12241	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_99 148915..149486 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_99:143319..149486+
coding sequence from alignment at Contig_99:143319..149486+

spliced messenger RNA

>mRNA_12241 ID=mRNA_12241|Name=jgi.p|Trimin1|339873|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2075bp|location=Sequence derived from alignment at Contig_99:143319..149486+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCCGGCGACGAGGAGAGTGAAGTGCAGAATGACTTGAAGAGGTA
TCCCAGATTCGGCAAGCGAGGCGCGCCTCAGGCGTTTGCCACCAAGCTGT
TTGAGCTGCTGTCGAATGAGTCACCGGACATTGTGTCATGGACACCTTCA
GGGCTGGCATTCCGGATTCACGACATGGAGAAGTTCACGTCCGAGTGCCT
GATCAAGTACTTCAAGCATAACAACGCCGCCAGCTTCCAACGACAGCTCA
ATTTGTACGGCTTCCGCAAGTCCCTGAAGGGCGAGGACAGCGGCGGCTTC
CAGCACGCTTCCTTCCAGCGCGACAGGCCCGAACTGCTGATAGAGGTGCG
GCGGACGGTACAGGCGAGCCAGGCGGCAAAACGGAAAACGGAGACCGTGG
ACGATGGCGTGCCGGAGTACGTGCCTGCGAGTCGGTCGCGCATGGGGAGC
GCTGCTGGGGGAGCGGGAGGAACAGCGCGCGCGGAAGGCGGCGCAAAACG
GAAACGTGCTAAGGACGACGGCGGCGCGGGCGGCGCCAGCGGCGGCGGCA
GCGGGCGGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGCGGCGGC
GGCGACGCTGTGAGCGCGGAGTTGTACACATCTCCCGCGCAGTTGCAGGT
GATGGCGGGCGGCGCGGTGCAGCAGGCGGCGCCGGAGGGCTACATGCCGA
TGGCGTACCCGGCGATGGGGCTCATGGAGTACTCCATGCTGGGAATACCG
CAGATGGGCGCATTCGGAGGCCTGCTCCTGCCCCCCGGCGCCATGACGAG
CCTCGCCATGCAGTACTACTACCCGGGCGCGGCGGTGGCGGCGGCGGCGG
CGGCGCCCATGGGCGGCGACGACGCGGGCGCCATGGCGGCGGCGGCGGCG
CAGCCGGCGCAGCTGCAGCACATGATGGTGCCGCAGTACGCGCCGTACCT
GTACGGGCAGGCGTTCGGGCAGACGCCGTACGGCGCCACTGCCGCCGTGG
ACGCGCAGATGCAGATGCAGCTGCAGATGATGGGGTACGCGCAGGCGTAC
GCACCGCCGGCGATGGGAGGGGGCTACGCGCAGGGGGCGGTTGCGGAGGG
GGAGGCGCAAGGGGGGGCGGGGGGCGGCATGACGGCGGAGCAGCAGCAGA
TGCAAGCGCAGCTGCAGGCGATGCAGGCCGTGCAGCAGCAGCAGGCCATC
ATGCAGGCGCAGGTGGCACACAACGGCGGCGGCAGCGGTGACTCGTCTGA
CGCTACCAGCCGCAGCGGCAGCGACGGCGCAGCACAGCGACCGCAGTCCC
AGCTGACTGCGGCCATGTCGGTGGCGGACATGGCGGCGGCGGCAGCAGCG
GCGATGGCCGCCGCCGCGCCGCCGGCGCTGCCGCCGCAGGCCGGCTTGCG
AGAGGCGGGCAGCGGGGGCGTACAGGCGCTGTCGCTCTTTGGGCAGGAGG
GGAGGGGGCGGGCAGCGGGCGGCGCTCGCGCATCCGCGGCGGCGGCCACA
TGAGGAGGCGGCGGCATCAGTCGCAGTGTCAGTTGCACTTGGCTCGCTGT
TGCAGGGGCGCCTGCCGTGTCCGCGGCACATGCCCGCTGGTGCGAGCGCC
AGTTGTGCGCCCGGGTGTCGTTGATGCAACGGATATCTCGGTACTCTCTG
TACGACGCTACGCGTTGAGTCGACGACACCTGGAGCTCACGGCAAGCGTG
CCATGTGTTACGGCGAGCAGCAGCTGCGGCACACCGCGGCCGCATGTGTG
TTGCATCGCTCAGTGTCTTCATGTTGAAATTTGCAGTTCTTTGCGCGCGC
GCGCGCATCTTTACGTGGGCGCTGTGTCCATCGCGTGTGCCGGCGGGGAC
ACTGGCAAATCAGTGGTGTGTTTTCTGTGCCGTTGGTTTGCGACGCATGC
GCCATTGGGCGCAGTGCGGCTCCTGTCACCACGGTGCAGATGTAGTCGAC
GCAATGCGTTTTCGGGGCGCGCCGCACCACATGCGCTGCTGCCCGCCGGC
TGTGTACAGCTGCGCCGGCGGATGGAGTAGACACAGATGAGATCTAGACA
ATGACGACGCTGACCTTGATGGTGC

protein sequence of jgi.p|Trimin1|339873

>Trimin1|339873|MIX48636_66_33 ID=Trimin1|339873|MIX48636_66_33|Name=jgi.p|Trimin1|339873|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=501bp
MEPGDEESEVQNDLKRYPRFGKRGAPQAFATKLFELLSNESPDIVSWTPS
GLAFRIHDMEKFTSECLIKYFKHNNAASFQRQLNLYGFRKSLKGEDSGGF
QHASFQRDRPELLIEVRRTVQASQAAKRKTETVDDGVPEYVPASRSRMGS
AAGGAGGTARAEGGAKRKRAKDDGGAGGASGGGSGRRGGGGGGGGGGGGG
GDAVSAELYTSPAQLQVMAGGAVQQAAPEGYMPMAYPAMGLMEYSMLGIP
QMGAFGGLLLPPGAMTSLAMQYYYPGAAVAAAAAAPMGGDDAGAMAAAAA
QPAQLQHMMVPQYAPYLYGQAFGQTPYGATAAVDAQMQMQLQMMGYAQAY
APPAMGGGYAQGAVAEGEAQGGAGGGMTAEQQQMQAQLQAMQAVQQQQAI
MQAQVAHNGGGSGDSSDATSRSGSDGAAQRPQSQLTAAMSVADMAAAAAA
AMAAAAPPALPPQAGLREAGSGGVQALSLFGQEGRGRAAGGARASAAAAT
*

mRNA from alignment at Contig_99:143319..149486+

Legend: polypeptideexonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_12241 ID=mRNA_12241|Name=jgi.p|Trimin1|339873|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6168bp|location=Sequence derived from alignment at Contig_99:143319..149486+ (Tribonema minus UTEX_B_3156 )
ATGGAACCCGTAAGCCTCTGCCTGTCTCGATACTTCAACCTTTGCGGGCG
ATGATACAGCGCATGCATGCAACACTCATCCGGCGTGTTCAAGTTGCGCC
TGACCAAATATCCTTATTGTTGCACTGTTTCAGGGCGACGAGGAGAGTGA
AGTGCAGAATGACTTGAAGAGGTATCCCAGATTCGGCAAGCGAGGCGCGC
CTCAGGCGTTTGCCACCAAGCTGTTTGAGCTGCTGTCGAATGAGTCACCG
GACATTGTGTCATGGACACCTTCAGGTGAATGAAATGACCGCATTGTGTT
CTTTACGCGTCATCGGGAGGAGATCTGTGTGTTTGCGATCTTGTCACTGA
CTGCGTGCTGTGCGTGTCTGCTGCACAGGGCTGGCATTCCGGATTCACGA
CATGGAGAAGTTCACGTCCGAGTGCCTGATCAAGTACTTCAAGCGTGAGT
GCACCTGCCACTTCAGAAATGTGTTTCTCAGCTTGCTTGTTGCCCCAGGT
CGTGTTCGTCTTTGTTCGTGCAAAACCCAAGGTTCACGAGGCTACTGGCA
CCCCGCCACGGCTGATGCGTGTGCGCACACATACGCGTCCGATCGTAGCC
TCGCTGCCGAGCAAGCGGTACTGACAAAGGCGCCTGCCGTACTTTCTGCA
ATCACTCTGCTGCAGATAACAACGCCGCCAGCTTCCAACGACAGGTGCGT
GCTCCCTGCCTGGTGCATTCATGCTTGCTGGCACATGCACGTGTAAAGGA
AAACTGCAGAAAAGCAGGCGAGCAGTAAGCTCCCATTGAGAGAGGTTCGA
GGACTGGCCTCAGTGGCAGCACCAAAAGTGCAGCCTCAAAGAAGCAACAA
ACAGCAGTTTTAGCGAAAACAATCACAGCACTGTGAAAAGGGAACAATCA
CAACGACATCGTCCATTGTGATATTTGTGGGTGTGTCTGACTGTCTGTCA
GGACATGCCAATGCAGCTGCCATTGGCCACATGCAGATGCACCTGCCGGT
GCCCTGATGCGAAGGCCCGGCGCCCACGGCTTTGACGTGCTCAAACTTGC
ACACACGTCATTGTCCCATGCCTGTCACTTCTGCGCAGCTCAATTTGTAC
GGCTTCCGCAAGTCCCTGAAGGGCGAGGACAGCGGCGGCTTCCAGCACGC
TTCCTTCCAGCGCGACAGGCCCGAACTGCTGATAGAGGTGAGCGCGTGGT
GCAGCGCCGCACGGGGTGCCAACTGTAATTTGAAGCTGCAGATCCCGCCA
GGCACTTCATGGATACCTACAAGTCTCGGTGCTGCTCTGCTTTGCAGCCT
ACCCGATCGCTTGTGCACAGCGCGTGCGGTCCGCACGTGACGCTCCGCTG
CGAGGCATCTTGGCGCATCGCGCGGCGTGATGTCATGCATTCGATATCCA
TCAGACAACCAGCTGTCATCGCTGCCAACCCTTGAAGTTTCACTGCTGGA
CGACGACGTCAGAATAATCTTGATTCTGAGTGTTGTCATACGAACATCGT
GTGCCTTGCACCTTGGTTGGCTGGTGCCACTCAACTTCATACATTGGGGC
GTTGCGCAACGTGACGTTGTGTCAGAATACCGCTTGATGTCGTACGTGCC
TCTCCCCAGTTGGGCTGGTGCCACTCAACTTCAACCTCAACTTATTCTCC
CCGGGGTCATGTCTGCAGGTGCGGCGGACGGTACAGGCGAGCCAGGCGGC
AAAACGGAAAACGGAGACCGTGGACGATGGCGTGCCGGAGTACGTGCCTG
CGAGTCGGTCGCGCATGGGGAGCGCTGCTGGGGGAGCGGGAGGAACAGCG
CGCGCGGAAGGTGAGGCGGCATCCTGGCTATGTGTTGTGAACATGAACCC
ATGGCGTGTGTGTGGACCCATTGGTGTGTGTACTCATGGACTTGTAGTCA
GTGAGACACCATCGTGGCTGTGTGCCGTGATCGTGGACCCAATTGTGTGT
GTATGCATGGACTTGTGGTCAGTGAGATATTGTAGCAGTGTGATCGTGGA
CCGAATGGTGTGTGTTCTTGTGGGCTTGCATGTATTCACGAAGGCCCCAA
GGGAGGGGCCAGGTGTCTTGTGCATTCCTGGGATTCATTTTTATGCAGCA
CCTTAGTCTGCCCTGCGCCCTCGGAGCTTGGACACCGGTGCTGCAATGCA
GCACAGCATCCGTGCTCGGCAGGAGAGTAATGAGGAACCGCGGTCGCTGA
TTCTGGATGGCGAGGGCGGGCGCTGCGCAATCGTTCAGGCGCGCAAGCTC
CAGCAGCACGGCGCATGCTTTGCTGCCCACACCATACGCAGTGAGTGGCA
GCAAACGCAGCGAGAAGCACAGGCAGCCGTGCTCGGCGCTGTGTCGTTCA
AAGTGTGTATGAGAGATACAACAGGAAGCTGGAGTACCGGGAGAGGCGGG
TGTTGATACAATTCAGTGACTACGTGGGGGGCGATGGGTTTCATGCCACT
GTGTGCAGCCAGCGATCGGCAGCCGCCATCGCCGGCGCGCTGCTGTTCAA
CTTCATCTTCAACATTATATTCACTGCCGACTTCGTCCAACTTCATCTTG
AACGCTAACGTCACTGTCGAGTGAGGCGTGTCCTGCCATGGACGTGGCAT
AAGTCATGGCATCGCCATGACTTAGCAGTATCAAGCTTGTGTGTGGGCGC
GGAGCACGGCGCCGCGCGCGCGCGCATGTGCCACACAGCGAAACTCTCGA
ATGAGCCGTACAGAGCGCACATGCGAGGAGGCCGCAGTCAGCCGCCCGCA
ATTGTCAGATGCGCCGTGGGTATCGGCGCACCGACATGACGGCTGCTGCG
CAAGCGCGCCTGCGTGCCCGCTGCGCCGCCTGACGGGACTCATGTCGCGT
CCCCCCAAGCGCAGGCGGCGCAAAACGGAAACGTGCTAAGGACGACGGCG
GCGCGGGCGGCGCCAGCGGCGGCGGCAGCGGGCGGCGGGGCGGCGGCGGC
GGCGGCGGCGGCGGTGGTGGCGGCGGCGGCGACGCTGTGAGCGCGGAGTT
GTACACATCTCCCGCGCAGTTGCAGGTGATGGCGGGCGGCGCGGTGCAGC
AGGCGGCGCCGGAGGGCTACATGCCGATGGCGTACCCGGCGATGGGGCTC
ATGGAGTACTCCATGCTGGGAATACCGCAGATGGGCGCATGTGGCGCAGG
TGCGCAGCAGAATTCATTTGCGCTGTCGGTCCTGAGCGCTGCTGCTGCTG
CTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCTGATGGTCTGAACGGTGTC
ACACACACCGCCGTCGGTGTGTGTGAACGGGCCCCAGGTGCTGATGGCGT
ACACGGCGCTCGTGCTCACGGGGTTTCTTGTCCGCTGCTTGTGACGCTGC
CGATGGGCGCCGCGGGTAGGGGCGCGATCGGTTTCAGATGTGTCGTGGCA
TGTCCGTCGCAGCCTCACAACGTTTGTCGTACCGCATGCGAGTTATGCAT
GTCCTGCGCTGGGGCGCATGGGGCGTTCTGATGAGCTGGGACGCCCTGAC
GCCGCATTCGGGAATTTGCCAAGCACGTGCCGCACGTTCCGTTGGATTGC
GTGTTTCAGTTCATGTGTATTATGCCATCTGAGCTTCAACTGCCACTCAC
TTCTTCAATTGTTCGTCAGTGCTCTTCGAGCAGCTCATCATGTGGGCGTG
ATGCCGGGGGCGCCGCCGCTGCGCGCCGCTCGCGCAGGCGCAAGCATCAT
GCGCGCGGTAGCTTGCCTACTATTTGGGCGGAATAGACAGTAAGAGAGTA
TGCACACGGAAGCAGGCCATCAGCTGCGTCGCGCCACCAGCTCTGCAGCA
CAGCCTGAAGAGAGACAGCCAACGCCAGCGGTGCAGCGGCGCGGTGCGGA
GGCGGGCCCGCCGGCGTCGTGGCGTGCGCGCCGCCGCCCCTGGCGTGTGC
ATCCTGGTTGCGCGTGCGCGACTCCCCAGTGCCTCGAGGCATTGCCATAT
GACAGCGCGCTGTCGCCCGCCGCCTTGCCCTGACCCTAACCCTACATCTG
TCGCCCGCCGCCTTGCCCTGACCCTTATACGCCGCTTGGCGGCATCCGCT
CGGCAGCGCCAGGCGCGCCCATGATGGGCGGCATGCTTCCCGCAGTCGGA
GGCCTGCTCCTGCCCCCCGGCGCCATGACGAGCCTCGCCATGCAGTACTA
CTACCCGGGCGCGGCGGTGGCGGCGGCGGCGGCGGCGCCCATGGGCGGCG
ACGACGCGGGCGCCATGGCGGCGGCGGCGGCGCAGCCGGCGCAGCTGCAG
CACATGATGGTGCCGCAGTACGCGCCGTACCTGTACGGGCAGGCGTTCGG
GCAGACGCCGTACGGCGCCACTGCCGCCGTGGACGTGCACCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGAACGGCGGCGGCGGCGGCGAGGCGGCTGGC
GGCGCGGCGGCGGCGGCGGCGGCGGCGCTGCAGGCGCAGATGCAGATGCA
GCTGCAGATGATGGGGTACGCGCAGGCGTACGCACCGCCGGCGATGGGAG
GGGGCTACGCGCAGGGGGCGGTTGCGGAGGGGGAGGCGCAAGGGGGGGCG
GGGGGCGGCATGACGGCGGAGCAGCAGCAGATGCAAGCGCAGCTGCAGGC
GATGCAGGCCGTGCAGCAGCAGCAGGCCATCATGCAGGCGCAGGTGGGTG
CGCGGGCGCGTGCAGTCACTGATTGCGGGGGGAGGGGGTCCATTCGCTTG
TGAACTCTGAGTTGCATGCTGAAATCACCATGCTTTTCCAAACCATGCGT
CAAGTGCGTAGGTACCCATTGCACCGCAGGGTCCTGCTCACAGTGCTCTG
TGTGCCCTGACGATGTTGGCAGGCAATGCTGCAAGCGCAGGTGCAGTCGC
AGCAGCAGCAGCTGGAGCACGCGCAACAGCAGGGCGTCATTGAAGCAGCC
ACCAGCAGCAGCGGCGAGCAGCAGGAGGAGGAGGAGCAGGAGGAGGAAGC
GCAGCCGACAGGCCGCGCCGCTGCAGAGCTGCTGGCGGCGAGCGCGCTGT
CGCAGCAGCTGCAGCACCAGTTTGATGCGCAGCAGCAGCAGCTGGACGTG
CGGCAGCAACAACTGCAGCAGCAGCAGCAGCAGGCGGCGTCCGAGGACCC
GCAGCAGGTGCAGATGTCGGCGATGCAGGCCACGATGCAGGTGCAGATGC
AGGCGGCCATGCAGCAGCGCCACATGCAGCAGCAGGAGCGCGCGCACTCG
CAGATCTCGCAGCAGCTTCAGCTGCAGCAGGCCATGCAGCAGCAGCAGGC
GCAGGTCGCGTCGGTGCTGGCCGCGCAGCAGCAGATGCAGCTGCTGCAAG
CCGCCGCAGCACACAACGGCGGCGGCAGCGGTGACTCGTCTGACGCTACC
AGCCGCAGCGGCAGCGACGGCGCAGCACAGCGACCGCAGTCCCAGCTGAC
TGCGGCCATGTCGGTGGCGGACATGGCGGCGGCGGCAGCAGCGGCGATGG
CCGCCGCCGCGCCGCCGGCGCTGCCGCCGCAGGCCGGCTTGCGAGAGGCG
GGCAGCGGGGGCGTACAGGCGCTGTCGCTCTTTGGGCAGGAGGGGAGGGG
GCGGGCAGCGGGCGGCGCTCGCGCATCCGCGGCGGCGGCCACATGAGGAG
GCGGCGGCATCAGTCGCAGTGTCAGTTGCACTTGGCTCGCTGTTGCAGGG
GCGCCTGCCGTGTCCGCGGCACATGCCCGCTGGTGCGAGCGCCAGTTGTG
CGCCCGGGTGTCGTTGATGCAACGGATATCTCGGTACTCTCTGTACGACG
CTACGCGTTGAGTCGACGACACCTGGAGCTCACGGCAAGCGTGCCATGTG
TTACGGCGAGCAGCAGCTGCGGCACACCGCGGCCGCATGTGTGTTGCATC
GCTCAGTGTCTTCATGTTGAAATTTGCAGTTCTTTGCGCGCGCGCGCGCA
TCTTTACGTGGGCGCTGTGTCCATCGCGTGTGCCGGCGGGGACACTGGCA
AATCAGTGGTGTGTTTTCTGTGCCGTTGGTTTGCGACGCATGCGCCATTG
GGCGCAGTGCGGCTCCTGTCACCACGGTGCAGATGTAGTCGACGCAATGC
GTTTTCGGGGCGCGCCGCACCACATGCGCTGCTGCCCGCCGGCTGTGTAC
AGCTGCGCCGGCGGATGGAGTAGACACAGATGAGATCTAGACAATGACGA
CGCTGACCTTGATGGTGC

Coding sequence (CDS) from alignment at Contig_99:143319..149486+

>mRNA_12241 ID=mRNA_12241|Name=jgi.p|Trimin1|339873|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1503bp|location=Sequence derived from alignment at Contig_99:143319..149486+ (Tribonema minus UTEX_B_3156 )
ATGGAACCCGGCGACGAGGAGAGTGAAGTGCAGAATGACTTGAAGAGGTA
TCCCAGATTCGGCAAGCGAGGCGCGCCTCAGGCGTTTGCCACCAAGCTGT
TTGAGCTGCTGTCGAATGAGTCACCGGACATTGTGTCATGGACACCTTCA
GGGCTGGCATTCCGGATTCACGACATGGAGAAGTTCACGTCCGAGTGCCT
GATCAAGTACTTCAAGCATAACAACGCCGCCAGCTTCCAACGACAGCTCA
ATTTGTACGGCTTCCGCAAGTCCCTGAAGGGCGAGGACAGCGGCGGCTTC
CAGCACGCTTCCTTCCAGCGCGACAGGCCCGAACTGCTGATAGAGGTGCG
GCGGACGGTACAGGCGAGCCAGGCGGCAAAACGGAAAACGGAGACCGTGG
ACGATGGCGTGCCGGAGTACGTGCCTGCGAGTCGGTCGCGCATGGGGAGC
GCTGCTGGGGGAGCGGGAGGAACAGCGCGCGCGGAAGGCGGCGCAAAACG
GAAACGTGCTAAGGACGACGGCGGCGCGGGCGGCGCCAGCGGCGGCGGCA
GCGGGCGGCGGGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTGGCGGCGGC
GGCGACGCTGTGAGCGCGGAGTTGTACACATCTCCCGCGCAGTTGCAGGT
GATGGCGGGCGGCGCGGTGCAGCAGGCGGCGCCGGAGGGCTACATGCCGA
TGGCGTACCCGGCGATGGGGCTCATGGAGTACTCCATGCTGGGAATACCG
CAGATGGGCGCATTCGGAGGCCTGCTCCTGCCCCCCGGCGCCATGACGAG
CCTCGCCATGCAGTACTACTACCCGGGCGCGGCGGTGGCGGCGGCGGCGG
CGGCGCCCATGGGCGGCGACGACGCGGGCGCCATGGCGGCGGCGGCGGCG
CAGCCGGCGCAGCTGCAGCACATGATGGTGCCGCAGTACGCGCCGTACCT
GTACGGGCAGGCGTTCGGGCAGACGCCGTACGGCGCCACTGCCGCCGTGG
ACGCGCAGATGCAGATGCAGCTGCAGATGATGGGGTACGCGCAGGCGTAC
GCACCGCCGGCGATGGGAGGGGGCTACGCGCAGGGGGCGGTTGCGGAGGG
GGAGGCGCAAGGGGGGGCGGGGGGCGGCATGACGGCGGAGCAGCAGCAGA
TGCAAGCGCAGCTGCAGGCGATGCAGGCCGTGCAGCAGCAGCAGGCCATC
ATGCAGGCGCAGGTGGCACACAACGGCGGCGGCAGCGGTGACTCGTCTGA
CGCTACCAGCCGCAGCGGCAGCGACGGCGCAGCACAGCGACCGCAGTCCC
AGCTGACTGCGGCCATGTCGGTGGCGGACATGGCGGCGGCGGCAGCAGCG
GCGATGGCCGCCGCCGCGCCGCCGGCGCTGCCGCCGCAGGCCGGCTTGCG
AGAGGCGGGCAGCGGGGGCGTACAGGCGCTGTCGCTCTTTGGGCAGGAGG
GGAGGGGGCGGGCAGCGGGCGGCGCTCGCGCATCCGCGGCGGCGGCCACA
TGA