mRNA_14217 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|142912
Unique NamemRNA_14217
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A836C7V2_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7V2_9STRA)

HSP 1 Score: 500 bits (1287), Expect = 4.060e-179
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1
Query:    1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP
Sbjct:    1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 244          
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835ZAV2_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV2_9STRA)

HSP 1 Score: 237 bits (604), Expect = 2.420e-69
Identity = 120/244 (49.18%), Postives = 157/244 (64.34%), Query Frame = 1
Query:    1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            R GMGRVLQATKD SPG+L+L EEPL ++V G   +   K  ++  ++RQQL+D++H+++GE                              AP+        W A YE L++   + H I +LPW+ Q++D  QR LP G+P V+  A+F LASKAAHSC+PNC+WTT+NPYG ISYFAA PI+AG+ IT++Y    SA P L+RW + A SKDFIC CPQC+GPDATR +KC  CADGVAMP
Sbjct:   12 REGMGRVLQATKDFSPGDLVLREEPLYTFVAGLPNDAFIKAMQLPPEKRQQLLDLHHIRHGE------------------------------APETF------WLAIYEVLSIANFSGHGIKALPWQQQQLDAWQRALPPGSPEVSLAAIFALASKAAHSCIPNCLWTTENPYGAISYFAAHPISAGELITITYANSGSAVPKLQRWTDLARSKDFICACPQCTGPDATRGIKCLRCADGVAMP 219          
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YVF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF7_9STRA)

HSP 1 Score: 209 bits (532), Expect = 3.570e-64
Identity = 113/244 (46.31%), Postives = 154/244 (63.11%), Query Frame = 1
Query:    1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            R GMGRVLQAT+  SPG+L+L E PL+ + +           + S +++QQ++D++ LK GE A F SCE R+ E  ALAR V    L    +  +  DA   W   +E L++ + N   +++LPW+   +   Q  LP G P +   A+F LAS+A H+CV NC  TTQNPYG +SY+AA+PIAAGD  T++Y A +SAAPTLER    A +KDF+C C +C+ PDATR V CA CA+GV MP
Sbjct:   12 RQGMGRVLQATRAFSPGDLVLREAPLLFYFDELPNSHFDTFMETSAEEQQQILDLHRLKLGEPAHFTSCERRVGELEALARRVAAIWLRSSSSHGQAPDAA--WPLAFELLSIAEFNGQRMANLPWQEAILKQQQARLPPGQPEMAGAAVFCLASRAVHACVLNCAVTTQNPYGGMSYYAAQPIAAGDLNTVAY-ADSSAAPTLERLERLARTKDFVCACARCAAPDATRGVACARCANGVVMP 252          
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835Z1T0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1T0_9STRA)

HSP 1 Score: 194 bits (492), Expect = 3.090e-55
Identity = 107/249 (42.97%), Postives = 155/249 (62.25%), Query Frame = 1
Query:    1 RPGMGRVLQATKDLSPGELILVEEPLISWVNG-KIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYR----ALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            R GMG+VLQA +D +PG+L+L E PL+ +V G +    + K  +M+ +QRQ+L +M  L +G   RF SCE  ME+ +    A AR++  +  IP             W   Y+   V + N+   S +P + + ++  QR LP   P++   A+F LASKAAHSCVPNC++TT+NPYG +SY+AA PIAAGD +T++ VA      TL+RWA  A  +D +C C +C+GPDATR ++CA C +GVA+P
Sbjct:   12 REGMGQVLQAVRDFAPGDLVLRERPLVDFVTGSRRLTLLQKFVRMTPEQRQELCEMRMLAHGGAPRFTSCEQLMEDRQLPAQAQARLIRPSLDIPTSM----------WLTAYQ---VARFNSQEFSIVPLQQEHLNHAQRHLPPEVPQMRPAAVFSLASKAAHSCVPNCLFTTKNPYGAMSYYAAHPIAAGDLVTIARVA-CGGMSTLDRWAQLARRRDCLCACARCAGPDATRGIRCARCRNGVAVP 246          
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YS84_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS84_9STRA)

HSP 1 Score: 186 bits (471), Expect = 1.530e-51
Identity = 104/259 (40.15%), Postives = 151/259 (58.30%), Query Frame = 1
Query:    1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACL---------IPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAP----RVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPT--LERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            R G+GRVLQAT+  SPG+L+L E+PL+ ++N      ++    MS +++QQ++DM  L++GE A F SCE RM E   +AR V +  +         + DD           +   Y+  +V  LN   ++ LPW+  +++ ++  LP G P     +T  A+F LAS+A  +CVPNCV TTQNPY ++SY+AA PIAAGD IT++     +  PT  LE W   A  +D +CTC +C+GPD    VKCA C +GV  P
Sbjct:   12 RQGLGRVLQATRAFSPGDLVLREQPLMCYINAVPHSVLNAFMTMSAEEQQQVLDMRKLQFGETAHFASCERRMGELEPMARCVAEERMHASGLQGRRLRDDL----------FRTAYDLHSVTNLNHRRMADLPWQKDDLERLKAQLPPGYPASDEEITHGAVFRLASRAVPACVPNCVSTTQNPYNYMSYYAAHPIAAGDLITIALPRSGAGRPTATLEWWEQLARVRDAVCTCAKCTGPDVMCGVKCARCPNGVVTP 260          
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YTD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD3_9STRA)

HSP 1 Score: 178 bits (452), Expect = 6.210e-49
Identity = 115/262 (43.89%), Postives = 146/262 (55.73%), Query Frame = 1
Query:    1 RPGMGRVL---QATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGP---PW--------AATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTR--VALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSY--VAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            R GM RVL   QAT+  SPG+L+L E PL+S+        +     +S +++QQ+MDMY L  G  A F SCE  + E   LAR    A L       EH   GP    W        +  YE L+ +  NT   ++L W       +Q          T   +ALF +ASKAA+SCVPNC+ T QNPYG ISY A  PIAAGD IT+++  +A ++A PTLERW+  AF +D +CTC QC  PD TR VKCA CA GVAMP
Sbjct:   12 REGMSRVLSELQATRVFSPGDLVLREAPLLSYDTKDSVALLDDFMALSPEKQQQVMDMYRLNDGANAHFASCEGVLAEIEVLARAA--ATLWMSVHRHEHLLGGPGDTQWQTAHDSMRSIAYELLSRVLFNTIISATLQWHK---GSLQAQAQHSFVSATEEPIALFSVASKAAYSCVPNCISTWQNPYGVISYCAVHPIAAGDPITVAHRHLACSNAYPTLERWSTLAFRRDLVCTCAQCKRPDVTRGVKCARCAKGVAMP 268          
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A836CJK1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK1_9STRA)

HSP 1 Score: 176 bits (445), Expect = 5.650e-48
Identity = 83/141 (58.87%), Postives = 101/141 (71.63%), Query Frame = 1
Query:  310 WAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            W   Y+   V K N+H +S LPW+ + +D +Q  LP GAP++   ALF LASKAAHSCVPNCV TT NPYG ISYFAA PIAAGD +T+SY+A +  A TL+RW   A SKDF+C C +C+GPDAT  V+C  CADGVA P
Sbjct:   30 WLPAYQVAGVAKFNSHDMSVLPWQQERLDALQSKLPPGAPQLQAAALFSLASKAAHSCVPNCVVTTCNPYGAISYFAAHPIAAGDLVTISYIACSPDASTLDRWTELARSKDFVCACARCAGPDATLGVRCVRCADGVAAP 170          
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A836CCS1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS1_9STRA)

HSP 1 Score: 172 bits (437), Expect = 1.450e-46
Identity = 108/253 (42.69%), Postives = 145/253 (57.31%), Query Frame = 1
Query:    1 RPGMGRVL---QATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLP---WEMQEVD-DVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSY--VAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            R GM RVL   QAT+D SPG+L+L E PL+S+        +     +S +++QQ++D++ L  G  A F SCE  M     LA     A L          DA   +       + + L+    SS+P   W+ Q+     Q  L   +     VALF +ASKAA+SCVPNC+ + QNPYG ISY+AA PIAAGD IT+++  + P +A PTLERW+  A  +D +CTC QC+GPD TR VKCA CA+GV MP
Sbjct:   12 RDGMSRVLSELQATRDFSPGDLVLREAPLLSFTTKDPVSLLDDFMALSPEEQQQVLDLFRLNDGANAHFASCEGLMATVELLADAA--AALWMRAHGQGLSDAQGHYDTMRNTAHEL-LSRAMFSSVPFTTWQRQKDSLQAQAQLSYNSYESGTVALFRVASKAAYSCVPNCISSWQNPYGVISYYAAHPIAAGDPITIAFGTLTPGNATPTLERWSMLASRRDVVCTCAQCTGPDVTRGVKCACCAEGVVMP 261          
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YUI3_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUI3_9STRA)

HSP 1 Score: 168 bits (425), Expect = 4.680e-45
Identity = 107/252 (42.46%), Postives = 141/252 (55.95%), Query Frame = 1
Query:    1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEAL--------NVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            R GMGRVLQAT+  SPG+L+L EEPL+     +          +S +Q+QQ++D Y L+ GE ARF SCE RM E    A +   A +          DA   W  TYEA+        ++ K +   I++L W    +   +  L + +P +   ALF +ASKAAHSC PNC  T++NP G ISY+AA  I AGD IT++    +SA PTLERWA  A  KD +C C +C+GPD T  V     ADGV MP
Sbjct:   12 RDGMGRVLQATRAFSPGDLVLREEPLLVHDVKRPGSDFDSFMALSPEQQQQVLDFYRLRPGETARFASCERRMAEVNRAAHVA--AAVWMSAHGQGMSDAQ--WRTTYEAVRSTDFNLCSIFKFHACPIATLQWRKDNLMRARAQL-RTSPELPAGALFRVASKAAHSCAPNCSSTSRNPCGIISYYAAHAITAGDLITVACEC-SSAFPTLERWAGLARRKDCVCACARCAGPDVTCGVXXXXXADGVVMP 257          
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YNU4_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU4_9STRA)

HSP 1 Score: 166 bits (420), Expect = 5.780e-45
Identity = 104/242 (42.98%), Postives = 134/242 (55.37%), Query Frame = 1
Query:   10 MGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARF-DSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
            +GRVLQATK  SPG+L+L EEPL+   N  ++E    I+ +S ++R+QL  M+HL+ G++ RF  S  +      A+ R   +         D    A  P AA        K+  H  + +                               KAAHSC PNC+WT+Q P G +SYFAA+PIAAGD IT+ Y + AS APTLERWA  A +KDFIC CPQCSGP ATR V+CA CADGVA+P
Sbjct:   14 LGRVLQATKTFSPGDLVLREEPLLQGFNAMLSEL---IEALSPEKREQLFAMHHLRLGDRPRFLSSSSSSTARCHAVGRSAAER--------DSTGTASRPPAA--------KVGHHICAGV-------------------------------KAAHSCTPNCLWTSQTPCGAMSYFAAQPIAAGDPITICY-SDASTAPTLERWAELAQAKDFICACPQCSGPGATRGVRCARCADGVAVP 204          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7V2_9STRA4.060e-179100.00SET domain-containing protein (Fragment) n=1 Tax=T... [more]
A0A835ZAV2_9STRA2.420e-6949.18SET domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A835YVF7_9STRA3.570e-6446.31Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
A0A835Z1T0_9STRA3.090e-5542.97Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YS84_9STRA1.530e-5140.15MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YTD3_9STRA6.210e-4943.89Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836CJK1_9STRA5.650e-4858.87MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A836CCS1_9STRA1.450e-4642.69MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YUI3_9STRA4.680e-4542.46MYND-type domain-containing protein n=1 Tax=Tribon... [more]
A0A835YNU4_9STRA5.780e-4542.98MYND-type domain-containing protein n=1 Tax=Tribon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_97contigContig_97:333324..334055 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|142912|gw1.97.40.1
BRITEko00000,ko03036
KEGG koko:K11426
Descriptionmethyltransferase activity
COG categoryE
Max annot lvl2759|Eukaryota
EggNOG OGsCOG2940@1|root,KOG2084@2759|Eukaryota
Evalue1.63e-11
Seed ortholog2903.EOD24953
Hectar predicted targeting categoryother localisation
TranscriptId143234
TrackFilteredModels1
ProteinId142912
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142912gene_14217Tribonema minus UTEX_B_3156 geneContig_97 333324..334055 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14217_1exon_14217_1Tribonema minus UTEX_B_3156 exonContig_97 333324..334055 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14217CDS_14217Tribonema minus UTEX_B_3156 CDSContig_97 333324..334055 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|142912Trimin1|142912|gw1.97.40.1Tribonema minus UTEX_B_3156 polypeptideContig_97 333324..334055 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14217 ID=mRNA_14217|Name=jgi.p|Trimin1|142912|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_97:333324..334055+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AGACCAGGCATGGGCCGTGTGCTGCAGGCCACCAAGGACCTCTCTCCTGG
CGAGTTGATACTTGTGGAGGAACCCTTAATCTCTTGGGTAAATGGCAAGA
TTGCGGAGTGTGTCAGCAAGATCCAGAAGATGTCGACGCAGCAGCGGCAG
CAGCTGATGGACATGTACCACCTCAAGTACGGCGAGAAGGCGCGCTTCGA
CAGCTGCGAGGCACGCATGGAGGAGTACAGAGCTCTGGCTCGCATGGTGC
CACAGGCCTGCCTGATCCCAGATGACGCACCAGACGAGCACCAGGACGCT
GGGCCGCCGTGGGCAGCCACGTACGAGGCGCTGAACGTCATGAAGTTAAA
CACTCACTGCATCAGCTCGCTCCCCTGGGAGATGCAGGAAGTGGACGATG
TGCAGAGGATGCTACCGCAGGGCGCGCCGCGCGTCACGCGGGTGGCGCTC
TTCCCCCTCGCCTCCAAGGCCGCCCACTCCTGCGTCCCCAACTGCGTGTG
GACCACACAGAACCCCTACGGCCACATCAGCTACTTTGCCGCGCGCCCCA
TTGCCGCTGGCGACGCGATCACCATGTCATACGTCGCCCCCGCCTCCGCG
GCGCCGACGCTGGAGCGCTGGGCCAACACGGCCTTCTCCAAGGACTTCAT
CTGCACGTGCCCGCAATGCTCGGGGCCGGACGCCACGCGCGCCGTGAAGT
GCGCGCACTGCGCCGACGGCGTGGCCATGCCG
back to top

protein sequence of jgi.p|Trimin1|142912

>Trimin1|142912|gw1.97.40.1 ID=Trimin1|142912|gw1.97.40.1|Name=jgi.p|Trimin1|142912|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=244bp
RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQ
QLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDA
GPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVAL
FPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASA
APTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP
back to top

mRNA from alignment at Contig_97:333324..334055+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14217 ID=mRNA_14217|Name=jgi.p|Trimin1|142912|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_97:333324..334055+ (Tribonema minus UTEX_B_3156 )
AGACCAGGCATGGGCCGTGTGCTGCAGGCCACCAAGGACCTCTCTCCTGG CGAGTTGATACTTGTGGAGGAACCCTTAATCTCTTGGGTAAATGGCAAGA TTGCGGAGTGTGTCAGCAAGATCCAGAAGATGTCGACGCAGCAGCGGCAG CAGCTGATGGACATGTACCACCTCAAGTACGGCGAGAAGGCGCGCTTCGA CAGCTGCGAGGCACGCATGGAGGAGTACAGAGCTCTGGCTCGCATGGTGC CACAGGCCTGCCTGATCCCAGATGACGCACCAGACGAGCACCAGGACGCT GGGCCGCCGTGGGCAGCCACGTACGAGGCGCTGAACGTCATGAAGTTAAA CACTCACTGCATCAGCTCGCTCCCCTGGGAGATGCAGGAAGTGGACGATG TGCAGAGGATGCTACCGCAGGGCGCGCCGCGCGTCACGCGGGTGGCGCTC TTCCCCCTCGCCTCCAAGGCCGCCCACTCCTGCGTCCCCAACTGCGTGTG GACCACACAGAACCCCTACGGCCACATCAGCTACTTTGCCGCGCGCCCCA TTGCCGCTGGCGACGCGATCACCATGTCATACGTCGCCCCCGCCTCCGCG GCGCCGACGCTGGAGCGCTGGGCCAACACGGCCTTCTCCAAGGACTTCAT CTGCACGTGCCCGCAATGCTCGGGGCCGGACGCCACGCGCGCCGTGAAGT GCGCGCACTGCGCCGACGGCGTGGCCATGCCG
back to top

Coding sequence (CDS) from alignment at Contig_97:333324..334055+

>mRNA_14217 ID=mRNA_14217|Name=jgi.p|Trimin1|142912|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=732bp|location=Sequence derived from alignment at Contig_97:333324..334055+ (Tribonema minus UTEX_B_3156 )
AGACCAGGCATGGGCCGTGTGCTGCAGGCCACCAAGGACCTCTCTCCTGG
CGAGTTGATACTTGTGGAGGAACCCTTAATCTCTTGGGTAAATGGCAAGA
TTGCGGAGTGTGTCAGCAAGATCCAGAAGATGTCGACGCAGCAGCGGCAG
CAGCTGATGGACATGTACCACCTCAAGTACGGCGAGAAGGCGCGCTTCGA
CAGCTGCGAGGCACGCATGGAGGAGTACAGAGCTCTGGCTCGCATGGTGC
CACAGGCCTGCCTGATCCCAGATGACGCACCAGACGAGCACCAGGACGCT
GGGCCGCCGTGGGCAGCCACGTACGAGGCGCTGAACGTCATGAAGTTAAA
CACTCACTGCATCAGCTCGCTCCCCTGGGAGATGCAGGAAGTGGACGATG
TGCAGAGGATGCTACCGCAGGGCGCGCCGCGCGTCACGCGGGTGGCGCTC
TTCCCCCTCGCCTCCAAGGCCGCCCACTCCTGCGTCCCCAACTGCGTGTG
GACCACACAGAACCCCTACGGCCACATCAGCTACTTTGCCGCGCGCCCCA
TTGCCGCTGGCGACGCGATCACCATGTCATACGTCGCCCCCGCCTCCGCG
GCGCCGACGCTGGAGCGCTGGGCCAACACGGCCTTCTCCAAGGACTTCAT
CTGCACGTGCCCGCAATGCTCGGGGCCGGACGCCACGCGCGCCGTGAAGT
GCGCGCACTGCGCCGACGGCGTGGCCATGCCG
back to top