mRNA_14217 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A836C7V2_9STRA (SET domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7V2_9STRA) HSP 1 Score: 500 bits (1287), Expect = 4.060e-179 Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 1
Query: 1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP
Sbjct: 1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 244
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835ZAV2_9STRA (SET domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAV2_9STRA) HSP 1 Score: 237 bits (604), Expect = 2.420e-69 Identity = 120/244 (49.18%), Postives = 157/244 (64.34%), Query Frame = 1
Query: 1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
R GMGRVLQATKD SPG+L+L EEPL ++V G + K ++ ++RQQL+D++H+++GE AP+ W A YE L++ + H I +LPW+ Q++D QR LP G+P V+ A+F LASKAAHSC+PNC+WTT+NPYG ISYFAA PI+AG+ IT++Y SA P L+RW + A SKDFIC CPQC+GPDATR +KC CADGVAMP
Sbjct: 12 REGMGRVLQATKDFSPGDLVLREEPLYTFVAGLPNDAFIKAMQLPPEKRQQLLDLHHIRHGE------------------------------APETF------WLAIYEVLSIANFSGHGIKALPWQQQQLDAWQRALPPGSPEVSLAAIFALASKAAHSCIPNCLWTTENPYGAISYFAAHPISAGELITITYANSGSAVPKLQRWTDLARSKDFICACPQCTGPDATRGIKCLRCADGVAMP 219
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YVF7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVF7_9STRA) HSP 1 Score: 209 bits (532), Expect = 3.570e-64 Identity = 113/244 (46.31%), Postives = 154/244 (63.11%), Query Frame = 1
Query: 1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
R GMGRVLQAT+ SPG+L+L E PL+ + + + S +++QQ++D++ LK GE A F SCE R+ E ALAR V L + + DA W +E L++ + N +++LPW+ + Q LP G P + A+F LAS+A H+CV NC TTQNPYG +SY+AA+PIAAGD T++Y A +SAAPTLER A +KDF+C C +C+ PDATR V CA CA+GV MP
Sbjct: 12 RQGMGRVLQATRAFSPGDLVLREAPLLFYFDELPNSHFDTFMETSAEEQQQILDLHRLKLGEPAHFTSCERRVGELEALARRVAAIWLRSSSSHGQAPDAA--WPLAFELLSIAEFNGQRMANLPWQEAILKQQQARLPPGQPEMAGAAVFCLASRAVHACVLNCAVTTQNPYGGMSYYAAQPIAAGDLNTVAY-ADSSAAPTLERLERLARTKDFVCACARCAAPDATRGVACARCANGVVMP 252
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835Z1T0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1T0_9STRA) HSP 1 Score: 194 bits (492), Expect = 3.090e-55 Identity = 107/249 (42.97%), Postives = 155/249 (62.25%), Query Frame = 1
Query: 1 RPGMGRVLQATKDLSPGELILVEEPLISWVNG-KIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYR----ALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
R GMG+VLQA +D +PG+L+L E PL+ +V G + + K +M+ +QRQ+L +M L +G RF SCE ME+ + A AR++ + IP W Y+ V + N+ S +P + + ++ QR LP P++ A+F LASKAAHSCVPNC++TT+NPYG +SY+AA PIAAGD +T++ VA TL+RWA A +D +C C +C+GPDATR ++CA C +GVA+P
Sbjct: 12 REGMGQVLQAVRDFAPGDLVLRERPLVDFVTGSRRLTLLQKFVRMTPEQRQELCEMRMLAHGGAPRFTSCEQLMEDRQLPAQAQARLIRPSLDIPTSM----------WLTAYQ---VARFNSQEFSIVPLQQEHLNHAQRHLPPEVPQMRPAAVFSLASKAAHSCVPNCLFTTKNPYGAMSYYAAHPIAAGDLVTIARVA-CGGMSTLDRWAQLARRRDCLCACARCAGPDATRGIRCARCRNGVAVP 246
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YS84_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS84_9STRA) HSP 1 Score: 186 bits (471), Expect = 1.530e-51 Identity = 104/259 (40.15%), Postives = 151/259 (58.30%), Query Frame = 1
Query: 1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACL---------IPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAP----RVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPT--LERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
R G+GRVLQAT+ SPG+L+L E+PL+ ++N ++ MS +++QQ++DM L++GE A F SCE RM E +AR V + + + DD + Y+ +V LN ++ LPW+ +++ ++ LP G P +T A+F LAS+A +CVPNCV TTQNPY ++SY+AA PIAAGD IT++ + PT LE W A +D +CTC +C+GPD VKCA C +GV P
Sbjct: 12 RQGLGRVLQATRAFSPGDLVLREQPLMCYINAVPHSVLNAFMTMSAEEQQQVLDMRKLQFGETAHFASCERRMGELEPMARCVAEERMHASGLQGRRLRDDL----------FRTAYDLHSVTNLNHRRMADLPWQKDDLERLKAQLPPGYPASDEEITHGAVFRLASRAVPACVPNCVSTTQNPYNYMSYYAAHPIAAGDLITIALPRSGAGRPTATLEWWEQLARVRDAVCTCAKCTGPDVMCGVKCARCPNGVVTP 260
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YTD3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTD3_9STRA) HSP 1 Score: 178 bits (452), Expect = 6.210e-49 Identity = 115/262 (43.89%), Postives = 146/262 (55.73%), Query Frame = 1
Query: 1 RPGMGRVL---QATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGP---PW--------AATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTR--VALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSY--VAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
R GM RVL QAT+ SPG+L+L E PL+S+ + +S +++QQ+MDMY L G A F SCE + E LAR A L EH GP W + YE L+ + NT ++L W +Q T +ALF +ASKAA+SCVPNC+ T QNPYG ISY A PIAAGD IT+++ +A ++A PTLERW+ AF +D +CTC QC PD TR VKCA CA GVAMP
Sbjct: 12 REGMSRVLSELQATRVFSPGDLVLREAPLLSYDTKDSVALLDDFMALSPEKQQQVMDMYRLNDGANAHFASCEGVLAEIEVLARAA--ATLWMSVHRHEHLLGGPGDTQWQTAHDSMRSIAYELLSRVLFNTIISATLQWHK---GSLQAQAQHSFVSATEEPIALFSVASKAAYSCVPNCISTWQNPYGVISYCAVHPIAAGDPITVAHRHLACSNAYPTLERWSTLAFRRDLVCTCAQCKRPDVTRGVKCARCAKGVAMP 268
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A836CJK1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CJK1_9STRA) HSP 1 Score: 176 bits (445), Expect = 5.650e-48 Identity = 83/141 (58.87%), Postives = 101/141 (71.63%), Query Frame = 1
Query: 310 WAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
W Y+ V K N+H +S LPW+ + +D +Q LP GAP++ ALF LASKAAHSCVPNCV TT NPYG ISYFAA PIAAGD +T+SY+A + A TL+RW A SKDF+C C +C+GPDAT V+C CADGVA P
Sbjct: 30 WLPAYQVAGVAKFNSHDMSVLPWQQERLDALQSKLPPGAPQLQAAALFSLASKAAHSCVPNCVVTTCNPYGAISYFAAHPIAAGDLVTISYIACSPDASTLDRWTELARSKDFVCACARCAGPDATLGVRCVRCADGVAAP 170
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A836CCS1_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCS1_9STRA) HSP 1 Score: 172 bits (437), Expect = 1.450e-46 Identity = 108/253 (42.69%), Postives = 145/253 (57.31%), Query Frame = 1
Query: 1 RPGMGRVL---QATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLP---WEMQEVD-DVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSY--VAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
R GM RVL QAT+D SPG+L+L E PL+S+ + +S +++QQ++D++ L G A F SCE M LA A L DA + + + L+ SS+P W+ Q+ Q L + VALF +ASKAA+SCVPNC+ + QNPYG ISY+AA PIAAGD IT+++ + P +A PTLERW+ A +D +CTC QC+GPD TR VKCA CA+GV MP
Sbjct: 12 RDGMSRVLSELQATRDFSPGDLVLREAPLLSFTTKDPVSLLDDFMALSPEEQQQVLDLFRLNDGANAHFASCEGLMATVELLADAA--AALWMRAHGQGLSDAQGHYDTMRNTAHEL-LSRAMFSSVPFTTWQRQKDSLQAQAQLSYNSYESGTVALFRVASKAAYSCVPNCISSWQNPYGVISYYAAHPIAAGDPITIAFGTLTPGNATPTLERWSMLASRRDVVCTCAQCTGPDVTRGVKCACCAEGVVMP 261
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YUI3_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUI3_9STRA) HSP 1 Score: 168 bits (425), Expect = 4.680e-45 Identity = 107/252 (42.46%), Postives = 141/252 (55.95%), Query Frame = 1
Query: 1 RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARFDSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEAL--------NVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
R GMGRVLQAT+ SPG+L+L EEPL+ + +S +Q+QQ++D Y L+ GE ARF SCE RM E A + A + DA W TYEA+ ++ K + I++L W + + L + +P + ALF +ASKAAHSC PNC T++NP G ISY+AA I AGD IT++ +SA PTLERWA A KD +C C +C+GPD T V ADGV MP
Sbjct: 12 RDGMGRVLQATRAFSPGDLVLREEPLLVHDVKRPGSDFDSFMALSPEQQQQVLDFYRLRPGETARFASCERRMAEVNRAAHVA--AAVWMSAHGQGMSDAQ--WRTTYEAVRSTDFNLCSIFKFHACPIATLQWRKDNLMRARAQL-RTSPELPAGALFRVASKAAHSCAPNCSSTSRNPCGIISYYAAHAITAGDLITVACEC-SSAFPTLERWAGLARRKDCVCACARCAGPDVTCGVXXXXXADGVVMP 257
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Match: A0A835YNU4_9STRA (MYND-type domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU4_9STRA) HSP 1 Score: 166 bits (420), Expect = 5.780e-45 Identity = 104/242 (42.98%), Postives = 134/242 (55.37%), Query Frame = 1
Query: 10 MGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQQLMDMYHLKYGEKARF-DSCEARMEEYRALARMVPQACLIPDDAPDEHQDAGPPWAATYEALNVMKLNTHCISSLPWEMQEVDDVQRMLPQGAPRVTRVALFPLASKAAHSCVPNCVWTTQNPYGHISYFAARPIAAGDAITMSYVAPASAAPTLERWANTAFSKDFICTCPQCSGPDATRAVKCAHCADGVAMP 732
+GRVLQATK SPG+L+L EEPL+ N ++E I+ +S ++R+QL M+HL+ G++ RF S + A+ R + D A P AA K+ H + + KAAHSC PNC+WT+Q P G +SYFAA+PIAAGD IT+ Y + AS APTLERWA A +KDFIC CPQCSGP ATR V+CA CADGVA+P
Sbjct: 14 LGRVLQATKTFSPGDLVLREEPLLQGFNAMLSEL---IEALSPEKREQLFAMHHLRLGDRPRFLSSSSSSTARCHAVGRSAAER--------DSTGTASRPPAA--------KVGHHICAGV-------------------------------KAAHSCTPNCLWTSQTPCGAMSYFAAQPIAAGDPITICY-SDASTAPTLERWAELAQAKDFICACPQCSGPGATRGVRCARCADGVAVP 204 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|142912 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_14217 ID=mRNA_14217|Name=jgi.p|Trimin1|142912|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_97:333324..334055+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. AGACCAGGCATGGGCCGTGTGCTGCAGGCCACCAAGGACCTCTCTCCTGGback to top protein sequence of jgi.p|Trimin1|142912 >Trimin1|142912|gw1.97.40.1 ID=Trimin1|142912|gw1.97.40.1|Name=jgi.p|Trimin1|142912|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=244bp RPGMGRVLQATKDLSPGELILVEEPLISWVNGKIAECVSKIQKMSTQQRQback to top mRNA from alignment at Contig_97:333324..334055+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_14217 ID=mRNA_14217|Name=jgi.p|Trimin1|142912|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=732bp|location=Sequence derived from alignment at Contig_97:333324..334055+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_97:333324..334055+ >mRNA_14217 ID=mRNA_14217|Name=jgi.p|Trimin1|142912|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=732bp|location=Sequence derived from alignment at Contig_97:333324..334055+ (Tribonema minus UTEX_B_3156 )back to top |