mRNA_13049 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351658
Unique NamemRNA_13049
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A836C7W8_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7W8_9STRA)

HSP 1 Score: 568 bits (1463), Expect = 1.360e-203
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
Query:    1 MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL 930
            MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL
Sbjct:    1 MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL 310          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A4R2KKI8_9RHOB (tRNA pseudouridine synthase A n=1 Tax=Rhodovulum euryhalinum TaxID=35805 RepID=A0A4R2KKI8_9RHOB)

HSP 1 Score: 112 bits (281), Expect = 8.530e-26
Identity = 82/243 (33.74%), Postives = 111/243 (45.68%), Query Frame = 1
Query:   55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            L +A+N+ L+     V ++D   V D FHAR  A  R Y++R+V    P                                    +  E GR WQVP PLDL  +RAAAA L G HDFT+FR + C  KSP++ I+  ++E                 +G P  Q     +R RSFL+ QVR++VG               +++VGAG  S  ++ A L ARDR+   P  PPHGLYL  V Y
Sbjct:   75 LTQALNYHLKPA--PVAVIDCARVEDDFHARFSAIERRYLFRLVARRAP------------------------------------MTLELGRVWQVPHPLDLAPMRAAAAHLVGRHDFTTFRASICQAKSPVKTIDALEIEE----------------TGFPGGQEFRFRLRARSFLHNQVRSIVGT--------------LERVGAGAWSPGQVRAALDARDRAACGPVCPPHGLYLAAVGY 249          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: R6J3M6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Azospirillum sp. CAG:239 TaxID=1262705 RepID=R6J3M6_9PROT)

HSP 1 Score: 112 bits (281), Expect = 4.140e-25
Identity = 80/243 (32.92%), Postives = 110/243 (45.27%), Query Frame = 1
Query:   55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            L  A+N  LR     V ++ +E V   FHAR  A GR Y+YRI++   PA                                    + E+ R W VPVPLD+E++R  A  L G HDF+SFR AAC  KSP++ +++ D+E  G                    + +   V  RSFL+ QVRNMVG               ++ VG G +  D++  +L A+DR  A P AP  GLYL +V Y
Sbjct:  166 LREAMNARLRDMEAPVCVISVEKVGQDFHARFSAKGRGYLYRILNRRAPA------------------------------------VLEKNRVWWVPVPLDVEKMREGAKYLLGHHDFSSFRAAACQAKSPIKTLDKLDIEVFG--------------------EEIRFIVEARSFLHHQVRNMVGT--------------LKMVGDGHLQPDDVKRILEAKDRKAAGPTAPACGLYLSKVVY 338          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: R6HT74_9PROT (tRNA pseudouridine synthase A n=3 Tax=Azospirillum TaxID=191 RepID=R6HT74_9PROT)

HSP 1 Score: 110 bits (276), Expect = 6.200e-25
Identity = 79/243 (32.51%), Postives = 113/243 (46.50%), Query Frame = 1
Query:   55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            L  A+N  LR+    V ++ +E V + FHAR  A GR Y+YRI++   PA                                    + E+ R W VPVPLD+E++R  A  L G HDF+SFR AAC  KSP++ ++R D+E RG                    + +   V  RSFL+ QVRNMVG               ++ VG G +  +++  +L A++R+ A   AP  GLYL +V Y
Sbjct:  100 LREAINARLREMEAPVSVIAVEKVGNDFHARFSARGRGYLYRILNRRAPA------------------------------------VLEKNRVWWVPVPLDVEKMREGAGYLIGHHDFSSFRAAACQAKSPVKTLDRLDIEVRG--------------------EEIHFIVEARSFLHHQVRNMVGT--------------LKMVGDGHLHPEDVKRILEAKNRAAAGVNAPACGLYLTKVVY 272          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: G7Z9Q7_AZOL4 (tRNA pseudouridine synthase A n=23 Tax=Azospirillum TaxID=191 RepID=G7Z9Q7_AZOL4)

HSP 1 Score: 109 bits (273), Expect = 9.340e-25
Identity = 82/248 (33.06%), Postives = 108/248 (43.55%), Query Frame = 1
Query:   40 FDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            F    L  A+N  L+     + ++++E V   FHAR  + GR YVYRIV+   P                                    L  + GRAW V  PLD E + AAA  L G HDFTSFR A C  KSP++ ++R DVE +G  +                     +    RSFL+ QVRNMVG               ++ VGAG  S+D++   L ARDR+ A P  PP GLY +   Y
Sbjct:   70 FTGLKLRDALNFHLKPA--PIAVLEVEAVTGDFHARLTSTGRAYVYRIVNRRAP------------------------------------LALDAGRAWHVTRPLDAEAMHAAAQVLVGQHDFTSFRAALCQAKSPVKTLDRLDVERQGDEIR--------------------VHAAARSFLHHQVRNMVGT--------------LELVGAGKWSVDDVRRALEARDRAKAGPTCPPDGLYFKLARY 245          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A2S2CPS6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Azospirillum thermophilum TaxID=2202148 RepID=A0A2S2CPS6_9PROT)

HSP 1 Score: 108 bits (271), Expect = 1.820e-24
Identity = 82/240 (34.17%), Postives = 104/240 (43.33%), Query Frame = 1
Query:   64 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            A+NH L+     V ++  E VPD FHAR    GR+YV+RIV+   P                                    L  + GRAW V  PLD E +  AA  L G HDFTSFR A C  KSP++ ++R +VE +G                      L +    RSFL+ QVRNMVG               ++ VGAG    D++   L ARDR+ A P APP GLY     Y
Sbjct:   78 ALNHHLKPA--PVAVLLAEEVPDDFHARLSCLGRSYVFRIVNRRAP------------------------------------LALDAGRAWHVQRPLDAEAMNLAARHLIGQHDFTSFRAALCQAKSPVKTLDRLEVERQG--------------------DELRIHAAARSFLHHQVRNMVGT--------------LELVGAGKWQPDDVRRALEARDRAKAGPTAPPDGLYFVSARY 245          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A366FWA2_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Roseiarcus fermentans TaxID=1473586 RepID=A0A366FWA2_9HYPH)

HSP 1 Score: 108 bits (269), Expect = 3.530e-24
Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 1
Query:   94 HDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 783
            H V ++ +E V D F ARH A  R YVYR+V+   P                                    L  +RGRAW+V   LD+E +RAAA AL G HDFT+FR A C  KSP+R ++R DV   G                     ++T +V   SFL+RQVR+MVG+              +  VGAG  +  +L A L A +RS     AP HGLYL  V Y
Sbjct:   86 HPVAVLAVEPVADDFDARHSARARHYVYRVVNRRAP------------------------------------LALDRGRAWRVKASLDVEAMRAAARALIGRHDFTTFRDAQCQAKSPIRTLDRLDVARDG--------------------DAITFAVSALSFLHRQVRSMVGS--------------LIDVGAGRWTAADLAAALAAAERSRCGQVAPAHGLYLARVDY 245          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A1I6UGC8_9RHOB (tRNA pseudouridine synthase A n=3 Tax=Sulfitobacter TaxID=60136 RepID=A0A1I6UGC8_9RHOB)

HSP 1 Score: 107 bits (266), Expect = 1.210e-23
Identity = 76/244 (31.15%), Postives = 106/244 (43.44%), Query Frame = 1
Query:   55 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYP 786
            L  A+N+ ++   H V +VD   V D FHAR  A  R Y++RI+    PA                                     F+ G  W V  PLDL+ +R  A+ L G HDFT+FR   C   +P++ ++R D+                     PA   +   VR RSFL+ QVR+ VG               +++VGAG +  D++  +L ARDR    P +PPHGLYL  V YP
Sbjct:   75 LSEALNYHMKP--HPVAIVDCVQVDDTFHARFSAQERRYLFRILMRRAPAT------------------------------------FQAGLVWNVKKPLDLDAMREGASHLLGQHDFTTFRSTICQSMTPVKTVDRLDMNL----------------VDTPAGPEVHFDVRARSFLHNQVRSFVGT--------------LERVGAGSLRPDDVKTMLEARDRQACGPVSPPHGLYLSHVGYP 250          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A7W6GFF0_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Hansschlegelia beijingensis TaxID=1133344 RepID=A0A7W6GFF0_9HYPH)

HSP 1 Score: 106 bits (265), Expect = 1.620e-23
Identity = 85/241 (35.27%), Postives = 103/241 (42.74%), Query Frame = 1
Query:   64 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYP 786
            A N  LR   H V +++   VP+AF AR  A  R YVYRIV    P                                    L  + GRAW+VP  LD+  + AAA  L G HDFT+FR AAC   SPLR ++R DVE  G  V                     +S   RSFL+ QVR+M G+              + QVG G  S D+L   L   DRS   P APP GL L +V YP
Sbjct:   78 AANAHLRP--HPVAVLEASAVPEAFDARFSAIRRHYVYRIVDRRPP------------------------------------LALDLGRAWRVPKRLDVAAMDAAAKRLLGRHDFTTFRSAACQASSPLRTLDRLDVERSGDAVL--------------------ISTNARSFLHNQVRSMAGS--------------LVQVGLGRWSADDLATALARADRSACGPVAPPDGLTLVQVDYP 246          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A2S6Q608_9PROT (tRNA pseudouridine synthase A n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q608_9PROT)

HSP 1 Score: 106 bits (264), Expect = 2.300e-23
Identity = 82/244 (33.61%), Postives = 109/244 (44.67%), Query Frame = 1
Query:   64 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPME 795
            A+N  +R E+  + + D   V   FHAR  A  RTY+YRI++            PR                             E GR W VP+PLD + + AAA AL G H+FTSFR A C  KSP+R IE   V  +G  +                     + VR +SFL+ Q+RN  G+              ++ VG+   +  +L+A L A DRS A P APP GLYL EV YP M+
Sbjct:   78 ALNAHMRNEQ--IVVTDAVQVMPNFHARISAVRRTYLYRILNRR----------PRP--------------------------TLEAGRVWHVPLPLDTKAMHAAAQALVGRHNFTSFRAAMCQAKSPVRTIEELSVIRKGDEIQ--------------------IHVRAQSFLHHQIRNFAGS--------------LELVGSRKWTAADLLAALAAEDRSAAGPTAPPDGLYLVEVEYPNMD 249          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7W8_9STRA1.360e-203100.00tRNA pseudouridine synthase n=1 Tax=Tribonema minu... [more]
A0A4R2KKI8_9RHOB8.530e-2633.74tRNA pseudouridine synthase A n=1 Tax=Rhodovulum e... [more]
R6J3M6_9PROT4.140e-2532.92tRNA pseudouridine synthase A n=1 Tax=Azospirillum... [more]
R6HT74_9PROT6.200e-2532.51tRNA pseudouridine synthase A n=3 Tax=Azospirillum... [more]
G7Z9Q7_AZOL49.340e-2533.06tRNA pseudouridine synthase A n=23 Tax=Azospirillu... [more]
A0A2S2CPS6_9PROT1.820e-2434.17tRNA pseudouridine synthase A n=1 Tax=Azospirillum... [more]
A0A366FWA2_9HYPH3.530e-2435.22tRNA pseudouridine synthase A n=1 Tax=Roseiarcus f... [more]
A0A1I6UGC8_9RHOB1.210e-2331.15tRNA pseudouridine synthase A n=3 Tax=Sulfitobacte... [more]
A0A7W6GFF0_9HYPH1.620e-2335.27tRNA pseudouridine synthase A n=1 Tax=Hansschlegel... [more]
A0A2S6Q608_9PROT2.300e-2333.61tRNA pseudouridine synthase A n=1 Tax=Alphaproteob... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:147815..150891 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351658|estExt_Genemark1.C_Ctg_960020
BRITEko00000,ko01000,ko03016
KEGG koko:K06173
EC5.4.99.12
DescriptiontRNA pseudouridine
COG categoryJ
Max annot lvl35493|Streptophyta
EggNOG OGsCOG0101@1|root,KOG4393@2759|Eukaryota,37SX5@33090|Viridiplantae,3GB34@35493|Streptophyta
Evalue7.92e-26
Seed ortholog88036.EFJ29927
Hectar predicted targeting categoryother localisation
TranscriptId351980
TrackFilteredModels1
ProteinId351658
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351658gene_13049Tribonema minus UTEX_B_3156 geneContig_96 147815..150891 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351658Trimin1|351658|estExt_Genemark1.C_Ctg_960020Tribonema minus UTEX_B_3156 polypeptideContig_96 147815..150869 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13049_1exon_13049_1Tribonema minus UTEX_B_3156 exonContig_96 147815..148072 +
exon_13049_2exon_13049_2Tribonema minus UTEX_B_3156 exonContig_96 148200..148247 +
exon_13049_3exon_13049_3Tribonema minus UTEX_B_3156 exonContig_96 148854..149141 +
exon_13049_4exon_13049_4Tribonema minus UTEX_B_3156 exonContig_96 149385..149426 +
exon_13049_5exon_13049_5Tribonema minus UTEX_B_3156 exonContig_96 149640..149774 +
exon_13049_6exon_13049_6Tribonema minus UTEX_B_3156 exonContig_96 150708..150891 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13049CDS_13049Tribonema minus UTEX_B_3156 CDSContig_96 147815..148072 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13049UTR3_13049Tribonema minus UTEX_B_3156 three_prime_UTRContig_96 150870..150891 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13049 ID=mRNA_13049|Name=jgi.p|Trimin1|351658|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=955bp|location=Sequence derived from alignment at Contig_96:147815..150891+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGAAGCCAGGCGGCGCGGCGGCAGCGGCGGCGCGTTCGACGCCAC
CGGCCTCGGTCGTGCCGTCAACCATGCCCTCAGGCAGGAACGACACGACG
TGCACCTCGTTGACCTGGAGCTGGTGCCGGACGCCTTTCACGCGCGACAC
CACGCGGCCGGCCGCACGTACGTGTACCGGATTGTGCACCCGCTCTGGCC
AGCGGCGGCGGAAGGCGCGGGGGGTCCACGGAATGGCGGCAGATCGGCGC
TGAGTCAGGAGGGCACGCGGGGGGCGCGGGACGGCAGCAGATCGGCGCTG
AGTCAGAACCTCCTCTTCGAGCGCGGGCGCGCGTGGCAGGTGCCCGTCCC
CCTGGACCTCGAGCGCGTGCGCGCCGCCGCGGCAGCGCTCAGCGGCGTCC
ACGACTTCACCAGCTTCCGCGGCGCCGCGTGCGTCATGAAGTCGCCGCTG
CGCCGCATAGAGCGCTTTGATGTAGAGGCGCGCGGGCCGCCGGTGGCGTG
CGGCAGTAGCGGCGGCGGCGGCAGCGGCAGCGGAGCGCCGGCGTGGCAGT
CGCTCACGTTGTCGGTGCGCTGCCGCTCGTTCCTCAATAGACAGGTTCGA
AACATGGTCGGCGCATTCAGTGCGGGCGCCATACGCGTGCGCAATATGGT
CGGCGCCATTCAGCAGGTGGGCGCGGGCGTCATGAGCTTGGACGAGCTCA
TTGCCCTGCTGCATGCCAGGGACCGGTCGCTGGCGCCGCCGCCCGCGCCG
CCACACGGCCTGTACTTGCAGGAGGTGCACTATCCGCCGATGGAGGACAT
TCTTGCCGCCGCGGCGCTTTACGCAGAAAACCGCGCCGCCGCTTTACAAG
ATGGGCAACTTCAGGGGGAGGCAGCAGACACAGACGATGAAGAAGGCTGC
CTCTCGGATCGCGAAACTGCAATAAGATTGTGACACTTTGGCTTAGTCGC
CGTGA
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protein sequence of jgi.p|Trimin1|351658

>Trimin1|351658|estExt_Genemark1.C_Ctg_960020 ID=Trimin1|351658|estExt_Genemark1.C_Ctg_960020|Name=jgi.p|Trimin1|351658|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp
MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARH
HAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQEGTRGARDGSRSAL
SQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPL
RRIERFDVEARGPPVACGSSGGGGSGSGAPAWQSLTLSVRCRSFLNRQVR
NMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAP
PHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGC
LSDRETAIRL*
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mRNA from alignment at Contig_96:147815..150891+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13049 ID=mRNA_13049|Name=jgi.p|Trimin1|351658|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3077bp|location=Sequence derived from alignment at Contig_96:147815..150891+ (Tribonema minus UTEX_B_3156 )
ATGCGCGAAGCCAGGCGGCGCGGCGGCAGCGGCGGCGCGTTCGACGCCAC CGGCCTCGGTCGTGCCGTCAACCATGCCCTCAGGCAGGAACGACACGACG TGCACCTCGTTGACCTGGAGCTGGTGCCGGACGCCTTTCACGCGCGACAC CACGCGGCCGGCCGCACGTACGTGTACCGGATTGTGCACCCGCTCTGGCC AGCGGCGGCGGAAGGCGCGGGGGGTCCACGGAATGGCGGCAGATCGGCGC TGAGTCAGGTGCGGCGGCTTCTTTTTTTGAGGGGGGGGGGTATGTGCGTA TATGAGTTTCACGCGCGCCACCACGCGGCCGGCCTGCACGTACGTGTACC GGATAGCGCACCCGCTGCATACGGCGGCGGCAGAGGAGGGCACGCGGGGG GCGCGGGACGGCAGCAGATCGGCGCTGAGTCAGGTGCGGCGGTCGATTCT ATTTGTGGGGGGCATGTACGTACTTCCGAAGTACATGTAGTTCAGGTGAG CACTGCTAGGCTCTAGCTGCGCATACCTGGCCTGGTTGACCTTTGCTGAC AACGACTCCCGAGTTCGGCATTTTTCAAACTCGGCGTTTGTGTGTGGGCG GACAATAAGCCGAATAAATGATGAAATGAGCTTGCGGTAGTCGCAGCGTG TGCAGCTTGGTGGCTGCCAAGTCTACACAGCCGCACTCGCGCATCATCGC CTGTGCCCTCTCAGCGCAGCACCACACGAGCCCACCTCCCCCCATCCTAT GCCCTGCTGCAGAATCAGCTGTGTCATCGCGTGCAATCAAAGCAGGTCCG CGCCGCCTTCGCCTGCAGCGCACGCGAGCACACGCAGCAGCACGCGCGAC CACACATTCGCTCTGACCAAACGAAGACCTCAACTCATGACACCGCAGCG CGCACGTCACATCCCCCCCCCCCTCCCGCCCGCGCCCCACACAGCCGCGG TGCCCGAAGACTTCAACGCAGGACACCGCAGCACACGTCACACCCCCCCC CCCCCTCCCCGCCCCCCCTCCCCTCCCCCCCCCGTACAGAACCTCCTCTT CGAGCGCGGGCGCGCGTGGCAGGTGCCCGTCCCCCTGGACCTCGAGCGCG TGCGCGCCGCCGCGGCAGCGCTCAGCGGCGTCCACGACTTCACCAGCTTC CGCGGCGCCGCGTGCGTCATGAAGTCGCCGCTGCGCCGCATAGAGCGCTT TGATGTAGAGGCGCGCGGGCCGCCGGTGGCGTGCGGCAGTAGCGGCGGCG GCGGCAGCGGCAGCGGAGCGCCGGCGTGGCAGTCGCTCACGTTGTCGGTG CGCTGCCGCTCGTTCCTCAATAGACAGGTGCGGCAAATGCGGCAGCGCTC CGATGACTACCTGTGCCCCCGTCGCTGTCACCGCAGCCTGAATACGTGCG CAATATGGTCGTCGTATACCGCTTCTGACGCTGCACCCCACCAGCGGCAT TTCGCGTCCGTGATGGGTCATACGTGTTTTTCCCGAGCCTGCGTTGCTCC AGCTGCAGATTGCGTCAGCGTTCCGGGGTTACCCCCCCCCCCCCATCGAT CCCGCTGCCGCGCGCTGCAGGTTCGAAACATGGTCGGCGCATTCAGTGCG GGCGCCATACGCGTGCTCTGCGCATCCGATGCGCGCTGCGCAGGGTGCGG CAGCCTCTGATGAGCGCCTGCTTGGATGATAGTACCGTTCTGCGACTTGT ATACAAACTGTTGAAACTCAATGAAGCGTTAGTTTTCTTCAGCTGCGCCC CGTCGCTGCCACAACAACTTGGAATTTGCAGCGCTCTGACGACTGCCTGT GCCCCCTTTGCTGCAACTTCAACAGGTGCGCAATATGGTCGGCGCCATTC AGCAGGTGGGCGCGGGCGTCATGAGCTTGGACGAGCTCATTGCCCTGCTG CATGCCAGGGACCGGTCGCTGGCGCCGCCGCCCGCGCCGCCACACGGCCT GTACTTGCAGGTGCGTGGCGTGTGATTGCGATTGATGCTGCTGCACATAT ATTTCGAAGTACTTTATGTGTACGCTGCTGTGCATGCAGCTGTGTAGGGT GTACCATCACCTGTTTGCAGAATGCATAGAAGTATGTAGAGTACCATCAG TCATATGTGGCGCCGCCGCCAGTGCCGTAGCACGGCCTGTAGTTACAGGT GTGTGATGTCTTCGCTGTGACGGGTGCAGGTTACTCTGCCGGGGTTGCTG CTTTGTGCGTCGCGCCATCGCCTGGTTGCGTGGTCTGTACTTGCACGTGT GTGTATGGAGGGGGGGCGGGGGGGGGGCTGCTGTGCAGGCATGTATGTAT CTGTACTTTTGTGCAAAGTATGGTGCCCGATGTAGGCTTGTACTATACTC GTACTTTCCAATGATCGCTGCCGCCCGCGACATGACACGGCCTATATTCA CAAGTCTGTGCTGCGCCGCCCGCCGGTGCAAACCTATACTCAGAATGAAC TGCGCAAGTGTGGATGAGCGACCATACGCACGAATGCGTATGCCCTGAAA GCAGGCACCTCCGTGCTCAAAGTGCAGCACATCACCACGCTTTGTAAATG AGCGCGCGCGTATAACCATGGTGGCCGTATCGCTATGAGTTGCTTGGCTT GCGCTGCTTTGCCCGCCAGTCAGGGGGGGGGGCAGACTCTCCACGACGGG TTTGGTTCTGGCATGCAGTGAAGCACGCCGCAGTGCGCATCAAGCTGCCG CGAAGCTGTCACTCACACACACACACACACCCGCCCTTTCAGAGCTCCGC ATGCCGAATCATTTAGTTTTCTGTACAGGCAAGTCATGTCACACAAATAC GTTTGCAGCGCCCTCGTTGAAAAAGCGCCCTGTCGACACCCCCGCATAAG CTCATGCTCACCGGTGCCCTCCCATGCGCGCGCGCGGTGTCAGGAGGTGC ACTATCCGCCGATGGAGGACATTCTTGCCGCCGCGGCGCTTTACGCAGAA AACCGCGCCGCCGCTTTACAAGATGGGCAACTTCAGGGGGAGGCAGCAGA CACAGACGATGAAGAAGGCTGCCTCTCGGATCGCGAAACTGCAATAAGAT TGTGACACTTTGGCTTAGTCGCCGTGA
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Coding sequence (CDS) from alignment at Contig_96:147815..150891+

>mRNA_13049 ID=mRNA_13049|Name=jgi.p|Trimin1|351658|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=933bp|location=Sequence derived from alignment at Contig_96:147815..150891+ (Tribonema minus UTEX_B_3156 )
ATGCGCGAAGCCAGGCGGCGCGGCGGCAGCGGCGGCGCGTTCGACGCCAC
CGGCCTCGGTCGTGCCGTCAACCATGCCCTCAGGCAGGAACGACACGACG
TGCACCTCGTTGACCTGGAGCTGGTGCCGGACGCCTTTCACGCGCGACAC
CACGCGGCCGGCCGCACGTACGTGTACCGGATTGTGCACCCGCTCTGGCC
AGCGGCGGCGGAAGGCGCGGGGGGTCCACGGAATGGCGGCAGATCGGCGC
TGAGTCAGGAGGGCACGCGGGGGGCGCGGGACGGCAGCAGATCGGCGCTG
AGTCAGAACCTCCTCTTCGAGCGCGGGCGCGCGTGGCAGGTGCCCGTCCC
CCTGGACCTCGAGCGCGTGCGCGCCGCCGCGGCAGCGCTCAGCGGCGTCC
ACGACTTCACCAGCTTCCGCGGCGCCGCGTGCGTCATGAAGTCGCCGCTG
CGCCGCATAGAGCGCTTTGATGTAGAGGCGCGCGGGCCGCCGGTGGCGTG
CGGCAGTAGCGGCGGCGGCGGCAGCGGCAGCGGAGCGCCGGCGTGGCAGT
CGCTCACGTTGTCGGTGCGCTGCCGCTCGTTCCTCAATAGACAGGTTCGA
AACATGGTCGGCGCATTCAGTGCGGGCGCCATACGCGTGCGCAATATGGT
CGGCGCCATTCAGCAGGTGGGCGCGGGCGTCATGAGCTTGGACGAGCTCA
TTGCCCTGCTGCATGCCAGGGACCGGTCGCTGGCGCCGCCGCCCGCGCCG
CCACACGGCCTGTACTTGCAGGAGGTGCACTATCCGCCGATGGAGGACAT
TCTTGCCGCCGCGGCGCTTTACGCAGAAAACCGCGCCGCCGCTTTACAAG
ATGGGCAACTTCAGGGGGAGGCAGCAGACACAGACGATGAAGAAGGCTGC
CTCTCGGATCGCGAAACTGCAATAAGATTGTGA
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