Trimin1|351658|estExt_Genemark1.C_Ctg_960020 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351658
Unique NameTrimin1|351658|estExt_Genemark1.C_Ctg_960020
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length311
Homology
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A836C7W8_9STRA (tRNA pseudouridine synthase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7W8_9STRA)

HSP 1 Score: 566 bits (1460), Expect = 2.950e-203
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL 310
            MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL
Sbjct:    1 MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGCLSDRETAIRL 310          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A4R2KKI8_9RHOB (tRNA pseudouridine synthase A n=1 Tax=Rhodovulum euryhalinum TaxID=35805 RepID=A0A4R2KKI8_9RHOB)

HSP 1 Score: 112 bits (281), Expect = 7.340e-26
Identity = 82/243 (33.74%), Postives = 111/243 (45.68%), Query Frame = 0
Query:   19 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 261
            L +A+N+ L+     V ++D   V D FHAR  A  R Y++R+V    P                                    +  E GR WQVP PLDL  +RAAAA L G HDFT+FR + C  KSP++ I+  ++E                 +G P  Q     +R RSFL+ QVR++VG               +++VGAG  S  ++ A L ARDR+   P  PPHGLYL  V Y
Sbjct:   75 LTQALNYHLKPA--PVAVIDCARVEDDFHARFSAIERRYLFRLVARRAP------------------------------------MTLELGRVWQVPHPLDLAPMRAAAAHLVGRHDFTTFRASICQAKSPVKTIDALEIEE----------------TGFPGGQEFRFRLRARSFLHNQVRSIVGT--------------LERVGAGAWSPGQVRAALDARDRAACGPVCPPHGLYLAAVGY 249          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: R6J3M6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Azospirillum sp. CAG:239 TaxID=1262705 RepID=R6J3M6_9PROT)

HSP 1 Score: 112 bits (281), Expect = 3.560e-25
Identity = 80/243 (32.92%), Postives = 110/243 (45.27%), Query Frame = 0
Query:   19 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 261
            L  A+N  LR     V ++ +E V   FHAR  A GR Y+YRI++   PA                                    + E+ R W VPVPLD+E++R  A  L G HDF+SFR AAC  KSP++ +++ D+E  G                    + +   V  RSFL+ QVRNMVG               ++ VG G +  D++  +L A+DR  A P AP  GLYL +V Y
Sbjct:  166 LREAMNARLRDMEAPVCVISVEKVGQDFHARFSAKGRGYLYRILNRRAPA------------------------------------VLEKNRVWWVPVPLDVEKMREGAKYLLGHHDFSSFRAAACQAKSPIKTLDKLDIEVFG--------------------EEIRFIVEARSFLHHQVRNMVGT--------------LKMVGDGHLQPDDVKRILEAKDRKAAGPTAPACGLYLSKVVY 338          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: R6HT74_9PROT (tRNA pseudouridine synthase A n=3 Tax=Azospirillum TaxID=191 RepID=R6HT74_9PROT)

HSP 1 Score: 110 bits (276), Expect = 5.350e-25
Identity = 79/243 (32.51%), Postives = 113/243 (46.50%), Query Frame = 0
Query:   19 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 261
            L  A+N  LR+    V ++ +E V + FHAR  A GR Y+YRI++   PA                                    + E+ R W VPVPLD+E++R  A  L G HDF+SFR AAC  KSP++ ++R D+E RG                    + +   V  RSFL+ QVRNMVG               ++ VG G +  +++  +L A++R+ A   AP  GLYL +V Y
Sbjct:  100 LREAINARLREMEAPVSVIAVEKVGNDFHARFSARGRGYLYRILNRRAPA------------------------------------VLEKNRVWWVPVPLDVEKMREGAGYLIGHHDFSSFRAAACQAKSPVKTLDRLDIEVRG--------------------EEIHFIVEARSFLHHQVRNMVGT--------------LKMVGDGHLHPEDVKRILEAKNRAAAGVNAPACGLYLTKVVY 272          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: G7Z9Q7_AZOL4 (tRNA pseudouridine synthase A n=23 Tax=Azospirillum TaxID=191 RepID=G7Z9Q7_AZOL4)

HSP 1 Score: 109 bits (273), Expect = 8.070e-25
Identity = 82/248 (33.06%), Postives = 108/248 (43.55%), Query Frame = 0
Query:   14 FDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 261
            F    L  A+N  L+     + ++++E V   FHAR  + GR YVYRIV+   P                                    L  + GRAW V  PLD E + AAA  L G HDFTSFR A C  KSP++ ++R DVE +G  +                     +    RSFL+ QVRNMVG               ++ VGAG  S+D++   L ARDR+ A P  PP GLY +   Y
Sbjct:   70 FTGLKLRDALNFHLKPA--PIAVLEVEAVTGDFHARLTSTGRAYVYRIVNRRAP------------------------------------LALDAGRAWHVTRPLDAEAMHAAAQVLVGQHDFTSFRAALCQAKSPVKTLDRLDVERQGDEIR--------------------VHAAARSFLHHQVRNMVGT--------------LELVGAGKWSVDDVRRALEARDRAKAGPTCPPDGLYFKLARY 245          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A2S2CPS6_9PROT (tRNA pseudouridine synthase A n=1 Tax=Azospirillum thermophilum TaxID=2202148 RepID=A0A2S2CPS6_9PROT)

HSP 1 Score: 108 bits (271), Expect = 1.570e-24
Identity = 82/240 (34.17%), Postives = 104/240 (43.33%), Query Frame = 0
Query:   22 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 261
            A+NH L+     V ++  E VPD FHAR    GR+YV+RIV+   P                                    L  + GRAW V  PLD E +  AA  L G HDFTSFR A C  KSP++ ++R +VE +G                      L +    RSFL+ QVRNMVG               ++ VGAG    D++   L ARDR+ A P APP GLY     Y
Sbjct:   78 ALNHHLKPA--PVAVLLAEEVPDDFHARLSCLGRSYVFRIVNRRAP------------------------------------LALDAGRAWHVQRPLDAEAMNLAARHLIGQHDFTSFRAALCQAKSPVKTLDRLEVERQG--------------------DELRIHAAARSFLHHQVRNMVGT--------------LELVGAGKWQPDDVRRALEARDRAKAGPTAPPDGLYFVSARY 245          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A366FWA2_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Roseiarcus fermentans TaxID=1473586 RepID=A0A366FWA2_9HYPH)

HSP 1 Score: 108 bits (269), Expect = 3.050e-24
Identity = 81/230 (35.22%), Postives = 104/230 (45.22%), Query Frame = 0
Query:   32 HDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHY 261
            H V ++ +E V D F ARH A  R YVYR+V+   P                                    L  +RGRAW+V   LD+E +RAAA AL G HDFT+FR A C  KSP+R ++R DV   G                     ++T +V   SFL+RQVR+MVG+              +  VGAG  +  +L A L A +RS     AP HGLYL  V Y
Sbjct:   86 HPVAVLAVEPVADDFDARHSARARHYVYRVVNRRAP------------------------------------LALDRGRAWRVKASLDVEAMRAAARALIGRHDFTTFRDAQCQAKSPIRTLDRLDVARDG--------------------DAITFAVSALSFLHRQVRSMVGS--------------LIDVGAGRWTAADLAAALAAAERSRCGQVAPAHGLYLARVDY 245          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A1I6UGC8_9RHOB (tRNA pseudouridine synthase A n=3 Tax=Sulfitobacter TaxID=60136 RepID=A0A1I6UGC8_9RHOB)

HSP 1 Score: 107 bits (266), Expect = 1.050e-23
Identity = 76/244 (31.15%), Postives = 106/244 (43.44%), Query Frame = 0
Query:   19 LGRAVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYP 262
            L  A+N+ ++   H V +VD   V D FHAR  A  R Y++RI+    PA                                     F+ G  W V  PLDL+ +R  A+ L G HDFT+FR   C   +P++ ++R D+                     PA   +   VR RSFL+ QVR+ VG               +++VGAG +  D++  +L ARDR    P +PPHGLYL  V YP
Sbjct:   75 LSEALNYHMKP--HPVAIVDCVQVDDTFHARFSAQERRYLFRILMRRAPAT------------------------------------FQAGLVWNVKKPLDLDAMREGASHLLGQHDFTTFRSTICQSMTPVKTVDRLDMNL----------------VDTPAGPEVHFDVRARSFLHNQVRSFVGT--------------LERVGAGSLRPDDVKTMLEARDRQACGPVSPPHGLYLSHVGYP 250          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A7W6GFF0_9HYPH (tRNA pseudouridine synthase A n=1 Tax=Hansschlegelia beijingensis TaxID=1133344 RepID=A0A7W6GFF0_9HYPH)

HSP 1 Score: 106 bits (265), Expect = 1.400e-23
Identity = 85/241 (35.27%), Postives = 103/241 (42.74%), Query Frame = 0
Query:   22 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYP 262
            A N  LR   H V +++   VP+AF AR  A  R YVYRIV    P                                    L  + GRAW+VP  LD+  + AAA  L G HDFT+FR AAC   SPLR ++R DVE  G  V                     +S   RSFL+ QVR+M G+              + QVG G  S D+L   L   DRS   P APP GL L +V YP
Sbjct:   78 AANAHLRP--HPVAVLEASAVPEAFDARFSAIRRHYVYRIVDRRPP------------------------------------LALDLGRAWRVPKRLDVAAMDAAAKRLLGRHDFTTFRSAACQASSPLRTLDRLDVERSGDAVL--------------------ISTNARSFLHNQVRSMAGS--------------LVQVGLGRWSADDLATALARADRSACGPVAPPDGLTLVQVDYP 246          
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Match: A0A2S6Q608_9PROT (tRNA pseudouridine synthase A n=1 Tax=Alphaproteobacteria bacterium MarineAlpha11_Bin1 TaxID=2013106 RepID=A0A2S6Q608_9PROT)

HSP 1 Score: 106 bits (264), Expect = 1.990e-23
Identity = 82/244 (33.61%), Postives = 109/244 (44.67%), Query Frame = 0
Query:   22 AVNHALRQERHDVHLVDLELVPDAFHARHHAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQXXXXXXXXXXXXXXXQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPLRRIERFDVEARGPPVACGSSGGGXXGSGAPAWQSLTLSVRCRSFLNRQVRNMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAPPHGLYLQEVHYPPME 265
            A+N  +R E+  + + D   V   FHAR  A  RTY+YRI++            PR                             E GR W VP+PLD + + AAA AL G H+FTSFR A C  KSP+R IE   V  +G  +                     + VR +SFL+ Q+RN  G+              ++ VG+   +  +L+A L A DRS A P APP GLYL EV YP M+
Sbjct:   78 ALNAHMRNEQ--IVVTDAVQVMPNFHARISAVRRTYLYRILNRR----------PRP--------------------------TLEAGRVWHVPLPLDTKAMHAAAQALVGRHNFTSFRAAMCQAKSPVRTIEELSVIRKGDEIQ--------------------IHVRAQSFLHHQIRNFAGS--------------LELVGSRKWTAADLLAALAAEDRSAAGPTAPPDGLYLVEVEYPNMD 249          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351658 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C7W8_9STRA2.950e-203100.00tRNA pseudouridine synthase n=1 Tax=Tribonema minu... [more]
A0A4R2KKI8_9RHOB7.340e-2633.74tRNA pseudouridine synthase A n=1 Tax=Rhodovulum e... [more]
R6J3M6_9PROT3.560e-2532.92tRNA pseudouridine synthase A n=1 Tax=Azospirillum... [more]
R6HT74_9PROT5.350e-2532.51tRNA pseudouridine synthase A n=3 Tax=Azospirillum... [more]
G7Z9Q7_AZOL48.070e-2533.06tRNA pseudouridine synthase A n=23 Tax=Azospirillu... [more]
A0A2S2CPS6_9PROT1.570e-2434.17tRNA pseudouridine synthase A n=1 Tax=Azospirillum... [more]
A0A366FWA2_9HYPH3.050e-2435.22tRNA pseudouridine synthase A n=1 Tax=Roseiarcus f... [more]
A0A1I6UGC8_9RHOB1.050e-2331.15tRNA pseudouridine synthase A n=3 Tax=Sulfitobacte... [more]
A0A7W6GFF0_9HYPH1.400e-2335.27tRNA pseudouridine synthase A n=1 Tax=Hansschlegel... [more]
A0A2S6Q608_9PROT1.990e-2333.61tRNA pseudouridine synthase A n=1 Tax=Alphaproteob... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR020095Pseudouridine synthase I, TruA, C-terminalGENE3D3.30.70.660coord: 98..211
e-value: 2.2E-18
score: 68.4
IPR020095Pseudouridine synthase I, TruA, C-terminalGENE3D3.30.70.660coord: 212..263
e-value: 1.4E-11
score: 46.3
IPR020097Pseudouridine synthase I, TruA, alpha/beta domainPFAMPF01416PseudoU_synth_1coord: 213..262
e-value: 1.5E-8
score: 35.1
coord: 126..206
e-value: 4.9E-10
score: 39.9
NoneNo IPR availablePIRSRPIRSR001430-2PIRSR001430-2coord: 22..64
e-value: 7.9E-7
score: 26.8
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 72..96
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 285..305
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 82..96
NoneNo IPR availablePANTHERPTHR11142:SF0TRNA PSEUDOURIDINE SYNTHASE-LIKE 1coord: 18..63
NoneNo IPR availablePANTHERPTHR11142:SF0TRNA PSEUDOURIDINE SYNTHASE-LIKE 1coord: 104..263
IPR001406Pseudouridine synthase I, TruAPANTHERPTHR11142PSEUDOURIDYLATE SYNTHASEcoord: 104..263
IPR001406Pseudouridine synthase I, TruAPANTHERPTHR11142PSEUDOURIDYLATE SYNTHASEcoord: 18..63
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 213..266
IPR020103Pseudouridine synthase, catalytic domain superfamilySUPERFAMILY55120Pseudouridine synthasecoord: 21..206

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_96contigContig_96:147815..150869 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351658mRNA_13049Tribonema minus UTEX_B_3156 mRNAContig_96 147815..150891 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351658|estExt_Genemark1.C_Ctg_960020 ID=Trimin1|351658|estExt_Genemark1.C_Ctg_960020|Name=jgi.p|Trimin1|351658|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp
MREARRRGGSGGAFDATGLGRAVNHALRQERHDVHLVDLELVPDAFHARH
HAAGRTYVYRIVHPLWPAAAEGAGGPRNGGRSALSQEGTRGARDGSRSAL
SQNLLFERGRAWQVPVPLDLERVRAAAAALSGVHDFTSFRGAACVMKSPL
RRIERFDVEARGPPVACGSSGGGGSGSGAPAWQSLTLSVRCRSFLNRQVR
NMVGAFSAGAIRVRNMVGAIQQVGAGVMSLDELIALLHARDRSLAPPPAP
PHGLYLQEVHYPPMEDILAAAALYAENRAAALQDGQLQGEAADTDDEEGC
LSDRETAIRL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR020095PsdUridine_synth_TruA_C
IPR020097PsdUridine_synth_TruA_a/b_dom
IPR001406PsdUridine_synth_TruA
IPR020103PsdUridine_synth_cat_dom_sf