Trimin1|352345|estExt_Genemark1.C_Ctg_1160023 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352345
Unique NameTrimin1|352345|estExt_Genemark1.C_Ctg_1160023
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length227
Homology
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: A0A836CPZ6_9STRA (Ribosomal protein S5 domain 2-type protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CPZ6_9STRA)

HSP 1 Score: 410 bits (1055), Expect = 2.480e-144
Identity = 226/226 (100.00%), Postives = 226/226 (100.00%), Query Frame = 0
Query:    1 MSSKGATTDDITTVVGITAAEDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVEAPMALVGALYAATNKCVRVREEFTADAVILTVSTERALAQGVIDHVIDATRGAAKATIVGE 226
            MSSKGATTDDITTVVGITAAEDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVEAPMALVGALYAATNKCVRVREEFTADAVILTVSTERALAQGVIDHVIDATRGAAKATIVGE
Sbjct:    1 MSSKGATTDDITTVVGITAAEDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVEAPMALVGALYAATNKCVRVREEFTADAVILTVSTERALAQGVIDHVIDATRGAAKATIVGE 226          
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: W7TTS7_9STRA (Thymidylate synthase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TTS7_9STRA)

HSP 1 Score: 146 bits (368), Expect = 1.440e-39
Identity = 87/205 (42.44%), Postives = 118/205 (57.56%), Query Frame = 0
Query:   13 TVVGITAAEDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVEAPMALVGALYAATNKCVRVREEFTADAVILTVSTERALAQGVIDHVIDATRG 217
            T+ G    E+ IKKSRF+     A +FA+    L  V GD  KA H CWAW+G   E R +DDGEP GTAG+PIL++I+ E L    V V RYFGG+ LG GGLVRAYGG AR CLR AE                        IP+  VR+ AP+++ GA++   N+  +++E++TA+ +I+ V  + AL   +   + DATRG
Sbjct:   80 TLAGPAEYEEIIKKSRFLSRATPASSFAEAQTFLRDV-GDL-KASHNCWAWRG-HGEERSSDDGEPGGTAGRPILSAIESEDLVDVMVVVTRYFGGIKLGAGGLVRAYGGVARTCLRNAET--------------------LTHIPKVLVRLRAPLSMSGAVFQTINRTDKIKEDYTAEEIIVDVKVDAALIDNLRQQLQDATRG 261          
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: A0A7S4I6C5_9STRA (Hypothetical protein n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4I6C5_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.790e-38
Identity = 94/225 (41.78%), Postives = 118/225 (52.44%), Query Frame = 0
Query:    2 SSKGATTDDITTVVGITAAEDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKT--ESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVEAPMALVGALYAATNKCVRVREEFTADA-----VILTVSTERALAQGVIDHVIDATRGAA 219
            SS  A    +T   G+ AAE  IKKSRFIGY      + D    +  VK +HPK RH C+ W       + R +DDGEP+GTAG PIL  I+GEGLS T   VVRYFGGV LG GGL+RAYGGTARL LR A                     K V IP++ +RV    A  G +Y   +K   V  + + +      V L   TE    + + + +IDATRG+A
Sbjct:   69 SSSSAPVPQLTLEDGVHAAEQVIKKSRFIGYAKQCDNWGDAQEFIAAVKEEHPKGRHWCFGWVAGHNPVQERASDDGEPTGTAGAPILGGIKGEGLSDTACVVVRYFGGVKLGAGGLIRAYGGTARLALREAP--------------------KKVLIPKSSIRVSTGAANAGTIYRMASKFGGVASDESYNESGDLEVTLVCETEHV--ETLKEGIIDATRGSA 271          
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: A0A7S2ABG2_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2ABG2_TRICV)

HSP 1 Score: 137 bits (346), Expect = 6.260e-37
Identity = 87/206 (42.23%), Postives = 115/206 (55.83%), Query Frame = 0
Query:   17 ITAAEDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKT--ESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVEAPMALVGALYAATNKCVRVREEFTADA---VILTVSTERALAQGVIDHVIDATRG 217
            I  AE TIKKSRF+G       +AD  + L  V+ DHPK+RHVC+ +       + R +DDGEPSGT G PIL  I+GEGLS    AVVRY+GGV LG GGL+RAYGGTARL L+ A                      TV IP++ VR+    A  GA+Y   ++   V  + + DA   + +T++ E      V++ + DATRG
Sbjct:   25 IYVAEQTIKKSRFVGIAARCDNWADAQSFLATVRTDHPKSRHVCFGFVAGHNPVQERSSDDGEPSGTGGAPILGGIRGEGLSDVVCAVVRYYGGVKLGAGGLIRAYGGTARLVLQNAPT--------------------TVLIPKSTVRLRTGAANAGAVYQTASRYGGVAGDESYDAGGNLEVTITCESDSLGDVMEGIRDATRG 210          
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: D7FHE6_ECTSI (UPF0029 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHE6_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 2.520e-36
Identity = 72/131 (54.96%), Postives = 87/131 (66.41%), Query Frame = 0
Query:    2 SSKGATTDDITTVVGITAAEDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAE 132
            SS  A  + I TV G +  E+TIKKSRFIG C  A TF +G ALL  V  +HPKARH CWAW+G+  + R++DDGEP GTAGQPIL  I+ EG+S+             LGTGGL RAYGG +R CL+AAE
Sbjct:   15 SSSPADQEQIVTVCGESETEETIKKSRFIGRCGPAATFEEGKALLGRVLKEHPKARHSCWAWRGLGDDHRFSDDGEPGGTAGQPILGGIESEGVSE-------------LGTGGLCRAYGGASRQCLQAAE 132          
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: B8CDW6_THAPS (UPF0029 domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CDW6_THAPS)

HSP 1 Score: 133 bits (334), Expect = 1.740e-35
Identity = 83/202 (41.09%), Postives = 116/202 (57.43%), Query Frame = 0
Query:   21 EDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQ--GVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVEAPMALVGALYAATNKCVRVR--EEFTADAVI-LTVSTERALAQGVIDHVIDATRG 217
            E+ +KKSRFIG      ++ +    L+ V+ +HPK+RHVC+ +   GV TE R +DDGEP+GTAG PIL SI+GEGLS T   VVRYFGGV LG GGL+RAYG  ARL LR+A                       + IP++ +R+    A  GA+YA+  K   +   E F     + +T++ +    + + D ++DATRG
Sbjct:    1 EEIVKKSRFIGLATHCTSWEEAQVYLEQVRKEHPKSRHVCFGFVSGGVGTE-RCSDDGEPTGTAGVPILGSIKGEGLSDTLCIVVRYFGGVKLGAGGLIRAYGSAARLVLRSAPT--------------------EIHIPKSTIRISTRTANSGAIYASAAKYGGITGGESFNDRGELEVTITCDEVDGEKLKDEIVDATRG 181          
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: A0A7R9YZX2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9YZX2_9STRA)

HSP 1 Score: 130 bits (328), Expect = 7.750e-35
Identity = 70/131 (53.44%), Postives = 83/131 (63.36%), Query Frame = 0
Query:    3 SKGATTDDITTVVGITAAEDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKT--ESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAA 131
            S  ++   +T   G+ AAE  IKKSRFIGY      + D    +  VK +HPKARH C+ W       + R +DDGEP+GTAG PIL  I+GE LS T   VVRYFGGV LG GGL+RAYGGTARL LR A
Sbjct:   24 SSSSSVPQLTLEDGVHAAEQVIKKSRFIGYAKQCDNWGDAQEFISAVKDEHPKARHWCFGWVAGHNPVQERASDDGEPTGTAGAPILGGIKGEDLSDTACVVVRYFGGVKLGAGGLIRAYGGTARLVLREA 154          
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: A0A395L6B9_9HYPH (IMPACT family member YigZ n=8 Tax=Sinorhizobium/Ensifer group TaxID=227292 RepID=A0A395L6B9_9HYPH)

HSP 1 Score: 130 bits (326), Expect = 3.750e-34
Identity = 82/197 (41.62%), Postives = 110/197 (55.84%), Query Frame = 0
Query:   24 IKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVE-APMALVGALYAATNKCVRVREEFTADAVILTVSTERALAQGVIDHVIDATRGAA 219
            IKKSRF+  C   P      A L   +   P A H CWAW+ +    R+NDDGEPSGTAG+PILA+I G+ L +  V V R+FGG+LLG+GGL+RAYGGTA LCLRAAE                    + ++  +A +  + A +AL+ A   A N  + V E FT    ++TV   +  A G++  V D +RG A
Sbjct:   14 IKKSRFLAICAPVPDEQAAKAFL--AEHSDPTANHNCWAWR-IGQAYRFNDDGEPSGTAGKPILAAIDGQSLDRVAVVVTRWFGGILLGSGGLMRAYGGTAALCLRAAEK------------------IEMIETVRATIACDFADLALIKARLLARNVTL-VGESFTDKGPVMTVDMRKDEADGILAMVTDLSRGRA 188          
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: UPI001AC2AF03 (YigZ family protein n=1 Tax=Microvirga sp. 3-52 TaxID=2792425 RepID=UPI001AC2AF03)

HSP 1 Score: 128 bits (321), Expect = 2.160e-33
Identity = 86/207 (41.55%), Postives = 113/207 (54.59%), Query Frame = 0
Query:   18 TAAEDTIKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVE-APMALVGALYAATNKCVRVREEFTADAVILTVSTERALAQGVIDHVIDATRGAAKATI 223
            T+ E  IKKSRFI    A P  ++  A   +     P A H CWAW+  +T  R++DDGEPSGTAG+PIL +I    L Q  V V R+FGGVLLG+GGLVRAYGGTA  CLRAA+                    + V + +A + V  + +ALV A  ++ +      E FT   VI+TV   +A AQ +I  + D TRG A   +
Sbjct:    8 TSLEQAIKKSRFIAV--AGPLASEQAAKEFIAAHSDPNANHNCWAWRAGQTY-RFSDDGEPSGTAGKPILQAIDRLELDQVAVVVTRWFGGVLLGSGGLVRAYGGTAAACLRAAKR------------------VEIVPVQEATIFVPFSDLALVKARLSSASGVQIRNENFTEAGVIITVDLPKAAAQPIIRMITDVTRGNASVAV 193          
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Match: A0A7Y0AXG7_9HYPH (YigZ family protein n=1 Tax=Rhizobium sp. S-51 TaxID=2728849 RepID=A0A7Y0AXG7_9HYPH)

HSP 1 Score: 127 bits (318), Expect = 6.240e-33
Identity = 85/203 (41.87%), Postives = 108/203 (53.20%), Query Frame = 0
Query:   24 IKKSRFIGYCCAAPTFADGMALLDVVKGDHPKARHVCWAWQGVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFVAVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLXXXXXXXXXXXKTVKIPQAEVRVEA---PMALVGALYAATNKCVRVREEFTADAVILTVSTERALAQGVIDHVIDATRGAAKATI 223
            IKKSRFI +   AP   +  A   +     P A H CWAW+ +    R++DDGEPSGTAG+PIL +I G+GL    V V R+FGG+LLG+GGL+RAYGGTA  CLRAAE                    K   I + + R+ A    +ALV A   A    +   E+FT    ILTV+   A A G+   V D T G A+  I
Sbjct:   14 IKKSRFIAH--VAPVENEDAAKAFIAAAGDPAANHNCWAWR-IGQAYRFSDDGEPSGTAGKPILQAIDGQGLDNVAVVVTRWFGGILLGSGGLMRAYGGTAAACLRAAE--------------------KIEVIARIDARITAGFSDLALVKARLGAIPDLLVRNEDFTDSGAILTVALPEASAAGMARLVTDITSGRAQIKI 193          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352345 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836CPZ6_9STRA2.480e-144100.00Ribosomal protein S5 domain 2-type protein n=1 Tax... [more]
W7TTS7_9STRA1.440e-3942.44Thymidylate synthase n=1 Tax=Nannochloropsis gadit... [more]
A0A7S4I6C5_9STRA3.790e-3841.78Hypothetical protein n=2 Tax=Odontella aurita TaxI... [more]
A0A7S2ABG2_TRICV6.260e-3742.23Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
D7FHE6_ECTSI2.520e-3654.96UPF0029 domain-containing protein n=1 Tax=Ectocarp... [more]
B8CDW6_THAPS1.740e-3541.09UPF0029 domain-containing protein (Fragment) n=1 T... [more]
A0A7R9YZX2_9STRA7.750e-3553.44Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A395L6B9_9HYPH3.750e-3441.62IMPACT family member YigZ n=8 Tax=Sinorhizobium/En... [more]
UPI001AC2AF032.160e-3341.55YigZ family protein n=1 Tax=Microvirga sp. 3-52 Ta... [more]
A0A7Y0AXG7_9HYPH6.240e-3341.87YigZ family protein n=1 Tax=Rhizobium sp. S-51 Tax... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001498Impact, N-terminalPFAMPF01205UPF0029coord: 25..127
e-value: 8.7E-25
score: 87.1
IPR036956Impact, N-terminal domain superfamilyGENE3D3.30.230.30coord: 7..135
e-value: 5.9E-37
score: 128.0
NoneNo IPR availablePANTHERPTHR16301:SF20IMPACT FAMILY MEMBER YIGZcoord: 11..132
IPR023582Impact familyPANTHERPTHR16301IMPACT-RELATEDcoord: 11..132
IPR020568Ribosomal protein S5 domain 2-type foldSUPERFAMILY54211Ribosomal protein S5 domain 2-likecoord: 13..132

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_116contigContig_116:104431..109284 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352345mRNA_11265Tribonema minus UTEX_B_3156 mRNAContig_116 104431..109298 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352345|estExt_Genemark1.C_Ctg_1160023 ID=Trimin1|352345|estExt_Genemark1.C_Ctg_1160023|Name=jgi.p|Trimin1|352345|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=227bp
MSSKGATTDDITTVVGITAAEDTIKKSRFIGYCCAAPTFADGMALLDVVK
GDHPKARHVCWAWQGVKTESRYNDDGEPSGTAGQPILASIQGEGLSQTFV
AVVRYFGGVLLGTGGLVRAYGGTARLCLRAAENGGALGGGLGTAHLCLRA
AEKTVKIPQAEVRVEAPMALVGALYAATNKCVRVREEFTADAVILTVSTE
RALAQGVIDHVIDATRGAAKATIVGE*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001498Impact_N
IPR036956Impact_N_sf
IPR023582Impact
IPR020568Ribosomal_S5_D2-typ_fold