mRNA_14616 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351514
Unique NamemRNA_14616
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A835YKB4_9STRA (Transmembrane amino acid transporter protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKB4_9STRA)

HSP 1 Score: 848 bits (2191), Expect = 2.650e-309
Identity = 441/441 (100.00%), Postives = 441/441 (100.00%), Query Frame = 1
Query:    1 MLKTPEIIHPSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAFSQASVAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDANVAAALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKAFNIRKLAAWVMLIVTCFASVLCTYNAIATAASKQ 1323
            MLKTPEIIHPSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAFSQASVAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDANVAAALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKAFNIRKLAAWVMLIVTCFASVLCTYNAIATAASKQ
Sbjct:    1 MLKTPEIIHPSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAFSQASVAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDANVAAALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKAFNIRKLAAWVMLIVTCFASVLCTYNAIATAASKQ 441          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7S2UXQ2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UXQ2_9STRA)

HSP 1 Score: 256 bits (655), Expect = 1.120e-77
Identity = 154/383 (40.21%), Postives = 233/383 (60.84%), Query Frame = 1
Query:  178 YATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHP-EARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDANVAAALRRVM--KAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKAF--NIRKLAAWVMLIVTCFASVLCTYNAIATA 1311
            +  TL LL MT F+++AY IL+RDI SGL+   +G    +E      T E+SN+VLV C +   P C   SL+ALR+ CY+GF S +VLT +I YR   +N E+P E   +++A T++   +L + PIMSL F+C FN+LSVH+ LVNPTR+R+K +IHS++     IYL +G LGYFYAY NT+D+I LNF+ SDK++V GR+GL  T+  A+PM+ +PCR+   E  + + + +       +T  L++    S S  +               TS+   N+     R+   +  +H ++T  ++ FCL  A+  PGVA+VWS+CGSS+G  V++  P++ YL+IR KK+   +  K+ AW+M I +   +V CTY ++  A
Sbjct:    2 HIVTLCLLLMTFFIMVAYEILIRDIASGLVEFTLG----HE-----ITKEQSNYVLVVCNLFVSPLCYFTSLYALRYTCYIGFGSVMVLTASICYRSLSFNAENPMEFAARSLAVTTDFGDVLYSLPIMSLVFLCHFNMLSVHSQLVNPTRQRVKSMIHSAMSLSTLIYLLMGLLGYFYAYENTKDNIFLNFSFSDKLLVVGRVGLFATLTCALPMMAIPCRENLLEFYNSIADWLEKCCGGTETQGLLTTVQNSPSTQD--------------PTSAGRRNIQMPNERMTTGQLVKHVVSTTFVIAFCLVIAICTPGVAVVWSVCGSSLGMMVAYFFPSVCYLRIRRKKSLLRSKVKMGAWLMAITSAGLTVFCTYQSVERA 361          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: D7FH68_ECTSI (Aa_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH68_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 1.910e-74
Identity = 156/391 (39.90%), Postives = 213/391 (54.48%), Query Frame = 1
Query:  145 VAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGAT--GSFDTSSMDANVAAALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKAFNIRKLAAWVMLIVTCFASVLCTYNAIATA 1311
            V + AFG  G   TT +L+ MT+FV +AYM+LVRDIWSG++        E+  GE + + + ++                                       IGYR  E N E P A+        +   I+ AFPI  L+F C FNILSVH+  VNPTRERLKG++H ++G    +Y+ L   GY YAY  T+DDILLNFAPSD+V++ GRLG+G+TMLVAI +L+LPCRD    +   + E +    +  K    + G G             E+  T  G+  T +         R    A RH  TTV +M F LF A+S+PGV +VWSICGSSVGF + + LP +FYLKIR  K FNIRK  A+++++V+  A V+CT +A+  A
Sbjct:   17 VGQAAFGEPGAIVTTSVLMAMTIFVTIAYMVLVRDIWSGIV--------ESVIGETLDSDQSNH---------------------------------------IGYRSVEANQEDPTAKLGLKLNADSWGDIMEAFPIFCLSFQCHFNILSVHSHFVNPTRERLKGLLHGTMGLTSGLYIVLALCGYLYAYEGTKDDILLNFAPSDRVMIVGRLGMGLTMLVAITILVLPCRDIVFLVMDSVAEKLQEWCAGGKEYLPVDGTG-------------EVLTTPGGTMVTKT---------RAFFLAVRHVGTTVAIMGFSLFCALSVPGVGVVWSICGSSVGFMICYLLPGVFYLKIRWHKQFNIRKAGAFLVVVVSSLAIVICTRHAVLQA 338          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7S4RNK3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RNK3_9STRA)

HSP 1 Score: 230 bits (587), Expect = 5.720e-67
Identity = 155/404 (38.37%), Postives = 229/404 (56.68%), Query Frame = 1
Query:  127 AFSQASVAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFE-YNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLY--------EVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDA-NVAAALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKAF--NIRKLAAWVMLIVTCFASVLCTYNAI 1302
            A S A V + A+GP      TL+L    +FV++AYM+LVRDI++ ++  L   F + E      T    ++VL+G +IA +P  L K LHALR+ CYVGF S  VL VAI YR +E Y             F S+   +L AFPI  L+FMCQFN+L +  SLVNPTR+R++ II  ++ A   +  + G  GY YA  +T  +ILLNF P D+V++ G++G G+T+ +A+ M+LLPCR+    L  QL         E+   K +  +    I  +G SS    Y +++ E+       T +M   +   A  R+ +   H  +T+ +   C   AV+ PGVA+VWSICGSS+ F ++F LP++ Y++IRA K    N R L+AW +LI +  ++VLC+   I
Sbjct:   21 ATSYADVCRRAYGPGLELFLTLVLFVFLMFVMVAYMVLVRDIFTPIVSPLATSFMQGEPD----TAAVGDYVLLGIVIAMIPFFLQKDLHALRYNCYVGFVSISVLCVAIAYRAWENYPASSSNGSLNIKMFPSSFVDVLFAFPIPILSFMCQFNVLGIQGSLVNPTRQRIRQIIDGAVAASFVLTFSFGLGGYLYAGDDTNGNILLNFEPGDRVIIVGKVGCGVTITLAMAMMLLPCRETLLALGPQLRAWKQNNNNEISDMKGTEDEEIASIQ-SGTSSG---YGAVSEEM----PLITEAMSGYHHVEAASRLTEILTHVFSTLIIASICYACAVAAPGVAVVWSICGSSLAFIIAFILPSICYIRIRASKKGHGNPRLLSAWALLIFSICSAVLCSVQTI 412          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7S4D5B8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D5B8_HETAK)

HSP 1 Score: 229 bits (583), Expect = 2.990e-65
Identity = 162/476 (34.03%), Postives = 237/476 (49.79%), Query Frame = 1
Query:    4 LKTPEIIHPSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAFSQ------------------------------------ASVAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEA-RKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDANVAAALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKAFNIRKLAAWVMLIVTCFASVLCTYNAIATAASK 1320
            L + E I+P+P +  R+S    AVFNL AT++GGG LSLPY F+Q                                      VAK AFG  GG   T++L    LFV++AY +L+RDI SG++   +G+  + +           N VL  C++   P C  KSLHALR+ CY+GF +  +L  ++ Y  + +N   P      A    ++ +      PI++++++CQFN+LSVH+ L +PTR R+K  IH ++G    IY      GY  AY +T ++I  NF PS+K+++ GR GL +T+L   PM++LPCR+      S L                       +      S +    A  SFD  S              A RH   TV ++   L+ AV IPGVA+VWSI GS++G  ++F LPA  YLKIR +K  N+ K  A V+LI +   +V C+Y +I  A S+
Sbjct:   60 LPSVEFIYPAPVSSGRQSGLAPAVFNLCATILGGGVLSLPYTFAQLGWGLGLVTLIAVALVSDFALYILCSCARRSGMPSYVEVAKHAFGKKGGQLITIMLAVFILFVVVAYQVLIRDIASGIVEFFLGYDLDMDG---------RNKVLYVCVLMIAPLCFFKSLHALRYTCYLGFAAVCLLVGSLVYLGWAFNRAEPSLWATYARPAEASVADFFYVLPILAVSYVCQFNMLSVHSQLKHPTRGRMKTTIHLAIGLATLIYAVGAMAGYSCAYMDTNENIFNNFEPSNKLLLVGRCGLFVTLLCNTPMMVLPCRE------SALLXXXXXXXXXXXXXXXXGPRLEKTQLLGQESQDYSAEAADSFDDGSQRQLGEGGDGGCGGAVRHVAFTVLILGLALYLAVCIPGVAVVWSIAGSTMGLVLAFVLPAACYLKIRWQKKNNLVKKGAMVLLIGSIAFTVFCSYQSIGHALSE 520          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7S4VL45_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VL45_9STRA)

HSP 1 Score: 229 bits (583), Expect = 2.380e-64
Identity = 168/543 (30.94%), Postives = 249/543 (45.86%), Query Frame = 1
Query:   16 EIIHPSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAFSQAS------------------------------------VAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSG----LIGLLVGWFTENEAGEVI----FTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEY---NTEHPEARKQAVAF-TSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSARKTTPLISGNGASSSRGNYSSLNG-------------------------------ELGATGSFDTSSMDANVA----------------AALRRVMKAAR-------------------HFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKAFNIRKLAAWVMLIVTCFASVLCTYNAI 1302
            E+++P+  +  R+S    A+ NL+ATV GGG LSLP AF++A                                     VA  AFG      TT I+     FVL+AYM+L +DIW+     L   L+  F        +     T E SN+VLV  L+   P  L + LHALRH C+VGF S ++LT+A+ +R  +    N   P+  +Q++ + T   S IL AFPI++L+F   FN+LSVH +LVNPTR+R+K ++  S+G     +  +G  GY YA  +T D+ILLNF  SD  ++  R+G G T+L  +P++ LPCR+A   +     E    +  A+K   +         +G +  +NG                                 G+T + + S     V                 AA   V+                       H  +T  +++ C F AV++PGVA VWSICGSS+   + F +PA  YLKIR++K  N R + AW +L  +     +CT + I
Sbjct:   67 ELLNPTHNSSLRKSSPFIAMLNLVATVCGGGVLSLPLAFARAGIIPASILMVLSALMTDFGIYILCSCARRTGGKSYSDVACAAFGRLAEVFTTTIISAFVCFVLIAYMVLAKDIWTPVLLRLFPQLLSMFASRHGNIQVPNEELTNEASNYVLVVLLLLVTPLLLKRDLHALRHTCFVGFSSLILLTIAVAFRAIQQVQLNALLPKEEQQSINWCTDKFSDILFAFPIIALSFFSSFNVLSVHGALVNPTRKRVKLVLDGSIGICFFFFYIVGLCGYLYARNDTLDNILLNFPLSDNAILLSRIGYGFTLLFGMPLVTLPCREAILSVPEHFQEWREERARAQKYLSMSKVGDERGGKGKHLIINGVDFDEERPLIGRENEKRVPSLLPKHSNMSENSYGSTTNLENSPFVGRVRYFRHMSSMSKKLTVDDAAANGVLDTHHEGDEEHQQHSNPTLSEYFVHISSTAAIVLVCFFTAVAVPGVATVWSICGSSMSIIIGFIVPAGCYLKIRSRKKINPRFVGAWTLLFFSTVTGCVCTTHVI 609          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7S4RQ47_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RQ47_9STRA)

HSP 1 Score: 222 bits (565), Expect = 4.300e-63
Identity = 158/432 (36.57%), Postives = 226/432 (52.31%), Query Frame = 1
Query:   16 EIIHPSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAF------------------------------------SQASVAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFE-YNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLY--------EVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDA-NVAAALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVS 1173
            EI++P     SRRS  + A FNL+AT+VGGG LS+P AF                                    S A V + A+GP      TL+L    +FV++AYM+LVRDI++ ++  L   F + E      T    ++VL+G +IA +P  L K LHALR+ CYVGF S  VL VAI YR +E Y             F S+   +L AFPI  L+FMCQFN+L +  SLVNPTR+R++ II  ++ A   +  + G  GY YA  +T  +ILLNF P D+V++ G++G G+T+ +A+ M+LLPCR+    L  QL         E+   K +  +    I  +G SS    Y +++ E+       T +M   +   A  R+ +   H  +T+ +   C   AV+ PGVA+VWSICGSS+   VS
Sbjct:   49 EILNPHHDCSSRRSTVLPATFNLVATIVGGGILSVPLAFQKCGLVLTTALMIVSALGTDFSLYILCSSGRRTGATSYADVCRRAYGPGLELFLTLVLFVFLMFVMVAYMVLVRDIFTPIVSPLATSFMQGEPD----TAAVGDYVLLGIVIAMIPFFLQKDLHALRYNCYVGFVSISVLCVAIAYRAWENYPASSSNGSLNIKMFPSSFVDVLFAFPIPILSFMCQFNVLGIQGSLVNPTRQRIRQIIDGAVAASFVLTFSFGLGGYLYAGDDTNGNILLNFEPGDRVIIVGKVGCGVTITLAMAMMLLPCRETLLALGPQLRAWKQNNNNEISDMKGTEDEEIASIQ-SGTSSG---YGAVSEEM----PLITEAMSGYHHVEAASRLTEILTHVFSTLIIASICYACAVAAPGVAVVWSICGSSLVSLVS 468          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7S1BVU6_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVU6_9STRA)

HSP 1 Score: 219 bits (557), Expect = 3.310e-61
Identity = 153/488 (31.35%), Postives = 248/488 (50.82%), Query Frame = 1
Query:   16 EIIHPSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAFSQAS------------------------------------VAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTE--NEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLY-------EVVTAKFSARKTTPLISGNGA----SSSRGNYSSLNGELGATGSFDTSSMDANVAAALRR---------VMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAK-KAFNIRKLAAWVMLIVTCFASVLCTYNAI 1302
            E++ P   +  R++  ++A  NL+AT+ GGG LSLP AF +                                      VA+  FG       T++L  +  F L+AYM+LVRDIWS +     G         GE +        +LVG +    P  L +SLH LR+ CY+ F S  VL V+I YR F+      +   + + +T++   +L A P+  L+F+  +N+LSVH +LV+PTR R++ +I  S+G+   ++ A G  GY YA  +T D+ILLNF P DKV++ G++  GI++ +A+P+++LP R+ F  +  Q+        E  T    +++   L+S   A    SSS G   S+     + G+FD  +   ++   + +          ++   H  +T+ ++  CL  AV+ P VA+VWSICGSS+ F + F  PA  Y+++R K K  N R + AW ML+ +  ++++CT+  I
Sbjct:   64 ELLVPCADSSLRKTSRMAATVNLVATIAGGGVLSLPLAFRRTGILVGSLMVVLAAVMSNFSLYILCCCARRTGVSTYGEVARRVFGRKTECGVTIVLFTLLAFFLVAYMVLVRDIWSTVYTFATGRTLSVGPAGGETV--------LLVGVVAMVSPFMLQRSLHPLRYNCYISFASISVLCVSIIYRAFQRGAMTEDFWDKVLWYTTDYRDVLFALPLFVLSFLATYNMLSVHCALVHPTRRRVREVIGGSIGSCCILFYAFGIGGYCYALDHTLDNILLNFDPHDKVIILGKISFGISLTLAMPLVVLPARECFLMIPVQVQAWINETRECQTTLLHSQERARLLSSTRARHPSSSSMGTAVSVT-SFDSEGAFDHDASSLSLGKVIAKPVIETVDPDTLEQIIHMGSTLLVVATCLVAAVAAPRVAVVWSICGSSLAFVIGFIFPAAAYIRLRGKRKGMNPRIVGAWCMLVFSILSAIICTFLTI 542          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: B7GA29_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7GA29_PHATC)

HSP 1 Score: 214 bits (546), Expect = 5.070e-59
Identity = 165/524 (31.49%), Postives = 247/524 (47.14%), Query Frame = 1
Query:   16 EIIHPSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAFSQAS------------------------------------VAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLI-----GLLV--GWFTENEAGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDA--------------------FEELASQLYE------VVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDANVA---------------------AALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKAFNIRKLAAWVMLIVTCFASVLCTYNAIATAAS 1317
            E++ P   +Q+R+S  + A+ N++ATV GGG LSLP AFS+A                                     VA  AFG      TT+ L  M    L+AY +LV+D+W+ ++     GL V  G  ++ EA         SN +L G L+  +P  L + LHALRH CYVGF S ++L VA+ +R  +    H         ++++ +  L  FPI+ L F C +NIL VHA L++PTR ++K +I  S+     ++  +G  GY YA   T D+ILLNF   D  V+ GR+G   T+L  +P++LLPCR+A                    F  LA +         V    F A +   +      +S R   + +   L A  +  T++  AN +                       L+   +   + + TV +++   F A+S+PGVA VWSICGSS+  +++F +P   YLKIR  K   +   AAW++LI +  A VLCT  A+  A S
Sbjct:  102 ELLKPDHSSQARKSSPMVAMINMVATVCGGGVLSLPLAFSKAGILPTTLLMIYGALTTDLSLYLLVACARRTGGRSYGDVAMAAFGSAAQVVTTVTLTTMLCGALIAYQVLVKDVWTPVLLTTVPGLSVSLGKLSDREA---------SNLLLAGILLLAMPLLLKRDLHALRHTCYVGFGSCILLLVAVFFRAAQ-KIRHQSVHAAINWYSTDPADWLFCFPIVVLCFFCSYNILEVHAQLMHPTRLQIKRVIDHSMMICLVLFYTVGLCGYLYAGTATADNILLNFPFQDSAVLAGRIGFCFTLLFGLPLVLLPCREAALSIPAHWRAWRQDVAETRKFRLLARERNNYGAHLIVNGVDFDATEPHLVSKTRHGASLRYGTACIEQTLSADETDGTATNSANSSWTQLVNSDEQGMRTVDSCPNDCFLQSWKEQFSNVVPTVVILLVTYFVAISVPGVAAVWSICGSSMAIWIAFIVPTACYLKIREHKGLTLLASAAWLLLITSAIAMVLCTRQAVQNATS 615          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: K0SQT3_THAOC (Aa_trans domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQT3_THAOC)

HSP 1 Score: 206 bits (524), Expect = 1.830e-56
Identity = 147/463 (31.75%), Postives = 226/463 (48.81%), Query Frame = 1
Query:   28 PSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAFSQAS------------------------------------VAKVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENE---AGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTVAIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSVHASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNFAPSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSARKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDANVAAALRRVMKAARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYLKIRAKKA---FNIRKLAAWVMLIVTCFASVLCT 1290
            PS    SRR+   +A+FN+ AT++GGG LS+P + ++A                                     VA+ AFG      TT  +L + +F ++  M L + IWS ++ + +G     E    GE   T  +   VL+  L+   P  L + L +LRH+CYVGFFS  +L +A+ YR  E N+            +++  + L A PI+  A++C FNI+SV  SLV PTRER++G+IH ++     +    G  GY YAY  T  +ILLNF+P D +++ GR+  GI  L A+PM  LP R+A   +A+Q+ E   A+ S  ++  L          GN SS+         + T     N   ++ R  +   H + T G+   C   AV  PGVA+VW I GSS+ F + F +P   Y+K++ +      +   + AW +LI     ++LCT
Sbjct:   77 PSSSCDSRRATLPAAIFNMTATIIGGGVLSIPLSCARAGLGPFTALMAASAIATDFSLYVLVSCSRRCGSTSFGGVARSAFGGGAELLTTAAVLIVVVFSVVGLMKLNQGIWSPILMMTLGILIGGEDPPTGET--TALQDAIVLMVLLVLMTPFLLKRDLTSLRHLCYVGFFSIAILCLAMAYRAVELNSGTDVFATNVKWTSTSLPEALSALPIIMCAYLCSFNIISVSCSLVRPTRERVRGVIHWAVLLSFLVMYLFGVAGYLYAYDETSGNILLNFSPDDPIILLGRVSCGIMTLFALPMNTLPAREALLSVAAQVSE---ARASTNQSASLAERRILLRKAGNNSSIESAREDKIGYGTKDAAENSVVSISRKEEYI-HCLATFGIAFLCYVAAVLAPGVAIVWDISGSSMVFLIQFIIPGACYIKLKLRSRPDELSRNLVLAWCLLIFALIMALLCT 533          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A835YIR5_9STRA (Clathrin light chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIR5_9STRA)

HSP 1 Score: 394 bits (1012), Expect = 4.140e-137
Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 3
Query:   81 MDNDSDFFGEDQQTPIDATADITPSAEGYTDFGGDYVGGGYKGGGAEDYQQQQDAGQYGSLDGDEMNPAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 692
            MDNDSDFFGEDQQTPIDATADITPSAEGYTDFGGDYVGGGYKGGGAEDYQQQQDAGQYGSLDGDEMNPAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA
Sbjct:    1 MDNDSDFFGEDQQTPIDATADITPSAEGYTDFGGDYVGGGYKGGGAEDYQQQQDAGQYGSLDGDEMNPAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 204          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: D7G9H3_ECTSI (Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9H3_ECTSI)

HSP 1 Score: 135 bits (341), Expect = 2.970e-35
Identity = 74/128 (57.81%), Postives = 91/128 (71.09%), Query Frame = 3
Query:  309 MAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 692
            M   GMPAPE+V  +AL  FM  W+A L EKA+ E  AK  AL+AA+ D +    ER   KE +M  NR QEQ+FLEQLE +LESENPWER+VSLVDTQ+E    FKDTSR+ +++IQLKNDPI  S+
Sbjct:   95 MPDMGMPAPEDVEPSALDEFMERWQAGLVEKARIEAEAKAAALEAAKADLETHSVERAANKEAKMGQNREQEQIFLEQLEGELESENPWERVVSLVDTQSEVVEDFKDTSRMTSILIQLKNDPIDTSS 222          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7S3Y6V3_HETAK (Clathrin light chain n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y6V3_HETAK)

HSP 1 Score: 107 bits (267), Expect = 5.080e-24
Identity = 62/139 (44.60%), Postives = 90/139 (64.75%), Query Frame = 3
Query:  276 MNPAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 692
            ++  +D   G     G P    +   AL  FM +WE +L+EK   EE A ++A Q A+ + D F+A++E   E +M+ NR++EQV LEQLE+DLES+NPWERI +LVD QAE  G   D SR+++++IQLKN+P+   A
Sbjct:  127 LDATQDMMGGAQMMMGEP---HMMRTALDDFMDKWEQELREKRAVEEQAAEEAKQKAKAELDHFYAQKEKTFEAKMSKNRSEEQVLLEQLEADLESDNPWERITNLVDLQAE--GDDVDKSRMRSILIQLKNEPLEVKA 260          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7R9VTD9_9STRA (Clathrin light chain n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VTD9_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 1.310e-19
Identity = 54/136 (39.71%), Postives = 84/136 (61.76%), Query Frame = 3
Query:  282 PAEDGSNGHMAFQGMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHAS 689
            P E G+    +    P PEE   + + ++  EW+  LKE+  AE AAK +A++AAR + +KF AER+ ++ETRM  NR  EQ  LE +E+DLE++N W+R+V LV+   +      D  R++ ++I LKN+P  A+
Sbjct:  102 PFEAGAAAEDSLLPEPEPEEKGPSPMQKWNDEWQVTLKERKDAENAAKAEAVEAARVELEKFQAERDARRETRMAKNRADEQDKLEAIEADLENDNSWQRVVKLVELTHDTVEGAADVHRMRDVMITLKNEPARAT 237          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: K0S5A2_THAOC (Clathrin light chain n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0S5A2_THAOC)

HSP 1 Score: 92.8 bits (229), Expect = 5.910e-19
Identity = 56/142 (39.44%), Postives = 90/142 (63.38%), Query Frame = 3
Query:  285 AEDGSNGHMAFQGMPAPEEVAD---NALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA*HA 701
            A+D   G MA    PAP  +A    +A+ ++  EW+  L ++ + E A K   ++AAR D +KF AERE ++ETRM  NR+ EQ  LE +E+DLE++N W+R+V +++   + +    DT+R+K +++ LKN+P  ASA +A
Sbjct:   81 ADDDDGGLMA----PAPVSMAPPEPSAMQKWNEEWQTTLLQRKEEENALKASQVEAARADIEKFQAEREKRRETRMAKNRSDEQDKLEAIEADLENDNSWQRVVKMIELNQDSADGSADTNRMKDVLVLLKNEPDKASALNA 218          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7S2UWZ8_9STRA (Clathrin light chain n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UWZ8_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 1.460e-18
Identity = 51/119 (42.86%), Postives = 74/119 (62.18%), Query Frame = 3
Query:  324 MPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPI 680
            +  PE VA  AL  F  +W+ KL EKA+ E    Q+ +Q A+ + DKF+ E+ +++E+R + NR  EQ  LE+LE+DLE EN WER+ SLVD   +      D SR+  +I QLK +P+
Sbjct:   88 LEIPEPVARTALDDFEEQWKEKLAEKAELERQTTQETIQKAKQNLDKFYDEKRVQRESRQSKNRQLEQSMLEKLEADLECENAWERVSSLVDLTLDGGEDAPDQSRMVALITQLKREPL 206          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A2D4BVD7_PYTIN (Clathrin light chain n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BVD7_PYTIN)

HSP 1 Score: 89.7 bits (221), Expect = 1.260e-17
Identity = 59/144 (40.97%), Postives = 83/144 (57.64%), Query Frame = 3
Query:  324 MPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQA--------------------EPSGPFK-----DTSRIKTMIIQLKNDPI 680
            MPA EE  DN LT+FM ++EA++ +KAQ +E    +  + A+ D D+F  ER  KKE++  +NR QEQ  LE+L +DLESENPWER+VSLVD +                     EP    K     D SR++ + +QLK +P+
Sbjct:   91 MPAVEE--DNELTKFMRQYEAEIAQKAQEQEKVGVECKEKAKKDMDQFQTERSRKKESKQQANRVQEQATLEKLAADLESENPWERVVSLVDLEVNRKQKLAALNNKKDAKNKEPEPVKSSKKEDEEDLSRMRQLFVQLKAEPL 232          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A7S2RJR1_9STRA (Clathrin light chain n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RJR1_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 4.000e-17
Identity = 50/131 (38.17%), Postives = 82/131 (62.60%), Query Frame = 3
Query:  309 MAFQGMPAPEEVADNALT---RFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAEPSGPFKDTSRIKTMIIQLKNDPIHASA 692
            M    +P PE    +  T   ++  EW   L+E+  AE AAK + ++AA+ + ++F  ERE+K+ET+M +NR+ EQ  LE +E+DLE++N W+R+V +V+   + +    D SR+K ++I LKN+P  A A
Sbjct:   99 MTEDNLPEPEAAEPDETTPMAKWNQEWTVTLRERKDAENAAKGEHVEAAQAELERFQTEREVKRETKMTNNRSDEQEKLEAIEADLENDNSWQRVVKMVELNHDAAEGSLDVSRMKDVMIFLKNEPSRAIA 229          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A812V5R7_SYMMI (Clathrin light chain n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V5R7_SYMMI)

HSP 1 Score: 83.6 bits (205), Expect = 4.040e-16
Identity = 47/125 (37.60%), Postives = 79/125 (63.20%), Query Frame = 3
Query:  321 GMPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQAE-PSGPFK-DTSRIKTMIIQLKNDPIHAS 689
            GMP PE   ++AL++F  EW  +L+EK + E+AA+++A   A  +   + A+R+ +   +   NR++EQV LEQLESDL+  N W+R+  L++   + P  P + D SR++ + I LKN+P+  +
Sbjct:   27 GMPEPE--VEDALSKFNREWNERLEEKKRKEDAAEEEAKATAAEELANYLAQRQTRMSAKKEVNRSEEQVLLEQLESDLDGANVWDRVSKLIEAGVDVPDDPDRADVSRMRKLFIHLKNEPLETT 149          
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Match: A0A8K1CW16_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CW16_PYTOL)

HSP 1 Score: 84.0 bits (206), Expect = 1.560e-15
Identity = 56/144 (38.89%), Postives = 78/144 (54.17%), Query Frame = 3
Query:  324 MPAPEEVADNALTRFMGEWEAKLKEKAQAEEAAKQQALQAARGDHDKFFAERELKKETRMNSNRTQEQVFLEQLESDLESENPWERIVSLVDTQ--------------------AEPSGPFK-----DTSRIKTMIIQLKNDPI 680
            M  P    +N LT+FM ++E ++  KAQ +E    +  + A+ D ++F AER   KE++  SNR QEQ  LE+L  DLESENPWER+VSLVD +                    AE   P K     D SR++ + +QLK DP+
Sbjct:   81 MSVPVIEEENELTKFMRKYEGEIAAKAQEQEKVGVECKEKAKHDMEQFTAERSRIKESKQQSNRVQEQATLEKLALDLESENPWERVVSLVDLETNRKQKLAALNAKKDGKNKEAEAPKPVKKEEEEDVSRMRQLFVQLKADPL 224          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKB4_9STRA2.650e-309100.00Transmembrane amino acid transporter protein-domai... [more]
A0A7S2UXQ2_9STRA1.120e-7740.21Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
D7FH68_ECTSI1.910e-7439.90Aa_trans domain-containing protein n=1 Tax=Ectocar... [more]
A0A7S4RNK3_9STRA5.720e-6738.37Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4D5B8_HETAK2.990e-6534.03Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S4VL45_9STRA2.380e-6430.94Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S4RQ47_9STRA4.300e-6336.57Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S1BVU6_9STRA3.310e-6131.35Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
B7GA29_PHATC5.070e-5931.49Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]
K0SQT3_THAOC1.830e-5631.75Aa_trans domain-containing protein n=1 Tax=Thalass... [more]

Pages

back to top
BLAST of jgi.p|Trimin1|351514 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YIR5_9STRA4.140e-137100.00Clathrin light chain n=1 Tax=Tribonema minus TaxID... [more]
D7G9H3_ECTSI2.970e-3557.81Clathrin light chain n=2 Tax=Ectocarpus TaxID=2879... [more]
A0A7S3Y6V3_HETAK5.080e-2444.60Clathrin light chain n=1 Tax=Heterosigma akashiwo ... [more]
A0A7R9VTD9_9STRA1.310e-1939.71Clathrin light chain n=1 Tax=Pseudictyota dubia Ta... [more]
K0S5A2_THAOC5.910e-1939.44Clathrin light chain n=1 Tax=Thalassiosira oceanic... [more]
A0A7S2UWZ8_9STRA1.460e-1842.86Clathrin light chain n=1 Tax=Fibrocapsa japonica T... [more]
A0A2D4BVD7_PYTIN1.260e-1740.97Clathrin light chain n=1 Tax=Pythium insidiosum Ta... [more]
A0A7S2RJR1_9STRA4.000e-1738.17Clathrin light chain n=1 Tax=Eucampia antarctica T... [more]
A0A812V5R7_SYMMI4.040e-1637.60Clathrin light chain n=1 Tax=Symbiodinium microadr... [more]
A0A8K1CW16_PYTOL1.560e-1538.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_92contigContig_92:483932..492934 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351514|estExt_Genemark1.C_Ctg_920046
KEGG TC2.A.18.6.8
BRITEko00000,ko00001,ko02000
KEGG Pathwayko04727,map04727
KEGG koko:K14992
Descriptionamino acid transmembrane transporter activity
COG categoryE
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0814@1|root,KOG1305@2759|Eukaryota
Evalue3.76e-75
Seed ortholog2880.D7FH68
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionTransmembrane amino acid transporter
Ec32 orthologEc-13_000970.1
TranscriptId351836
TrackFilteredModels1
ProteinId351514
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351514gene_14616Tribonema minus UTEX_B_3156 geneContig_92 483932..492934 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14616_12exon_14616_12Tribonema minus UTEX_B_3156 exonContig_92 483932..484183 -
exon_14616_11exon_14616_11Tribonema minus UTEX_B_3156 exonContig_92 484673..484796 -
exon_14616_10exon_14616_10Tribonema minus UTEX_B_3156 exonContig_92 485629..485752 -
exon_14616_9exon_14616_9Tribonema minus UTEX_B_3156 exonContig_92 486249..486311 -
exon_14616_8exon_14616_8Tribonema minus UTEX_B_3156 exonContig_92 487005..487090 -
exon_14616_7exon_14616_7Tribonema minus UTEX_B_3156 exonContig_92 487503..487576 -
exon_14616_6exon_14616_6Tribonema minus UTEX_B_3156 exonContig_92 488264..488361 -
exon_14616_5exon_14616_5Tribonema minus UTEX_B_3156 exonContig_92 489226..489355 -
exon_14616_4exon_14616_4Tribonema minus UTEX_B_3156 exonContig_92 490012..490084 -
exon_14616_3exon_14616_3Tribonema minus UTEX_B_3156 exonContig_92 490831..490993 -
exon_14616_2exon_14616_2Tribonema minus UTEX_B_3156 exonContig_92 491668..491824 -
exon_14616_1exon_14616_1Tribonema minus UTEX_B_3156 exonContig_92 492791..492934 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14616UTR3_14616Tribonema minus UTEX_B_3156 three_prime_UTRContig_92 483932..484093 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14616CDS_14616Tribonema minus UTEX_B_3156 CDSContig_92 492791..492934 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351514Trimin1|351514|estExt_Genemark1.C_Ctg_920046Tribonema minus UTEX_B_3156 polypeptideContig_92 484094..492934 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14616 ID=mRNA_14616|Name=jgi.p|Trimin1|351514|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1488bp|location=Sequence derived from alignment at Contig_92:483932..492934- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCAAGACCCCGGAGATCATCCACCCCAGCCCTGGCAACCAGAGCCG
ACGCAGCGACACCGTTAGCGCAGTCTTCAACCTCATTGCCACGGTGGTGG
GCGGCGGCACGCTCAGTCTGCCGTACGCATTCTCACAGGCAAGTGTCGCC
AAGGTGGCATTTGGGCCCACAGGGGGCTACGCGACGACCCTCATACTGCT
CTGCATGACGCTATTCGTGCTGCTGGCCTATATGATACTGGTTCGTGACA
TCTGGTCTGGCCTCATTGGACTGCTCGTGGGCTGGTTCACAGAGAATGAA
GCTGGTGAAGTCATCTTCACACCTGAGGAGAGCAACTGGGTGCTTGTGGG
GTGCCTGATTGCGACACTGCCCGCTTGTCTGGCCAAGAGCCTGCACGCCC
TGCGCCACATGTGCTATGTGGGTTTCTTCAGCGCCCTGGTGCTCACCGTG
GCCATCGGCTACAGGTGCTTTGAGTACAACACCGAGCACCCGGAGGCACG
GAAGCAAGCTGTGGCATTCACCAGCAACGCCTCTCAGATTCTCGGCGCAT
TCCCCATTATGAGTCTGGCGTTCATGTGCCAGTTCAACATACTGAGCGTG
CATGCCAGCTTGGTCAACCCAACGCGTGAGCGGCTGAAGGGCATCATACA
CTCTAGCCTGGGAGCCGGTGGCTCCATCTACTTGGCGCTGGGGTTCCTGG
GCTACTTCTACGCATATGGCAACACCCAGGATGACATTCTGCTGAACTTT
GCGCCATCTGATAAGGTGGTGGTGTGGGGACGTCTGGGCCTGGGCATCAC
CATGCTGGTGGCAATACCCATGCTGCTGCTGCCATGCAGGGACGCTTTTG
AGGAACTGGCGAGCCAGCTGTACGAGGTGGTAACAGCAAAATTCTCCGCT
CGCAAGACTACCCCTCTCATCTCAGGCAATGGAGCGTCCTCATCACGCGG
CAACTACAGCAGCCTCAACGGCGAGCTTGGCGCAACAGGGTCGTTTGACA
CATCGTCTATGGACGCCAATGTAGCTGCTGCTCTGAGGAGAGTCATGAAG
GCAGCACGCCATTTCATGACAACCGTCGGGCTCATGATCTTCTGCCTCTT
CTTTGCCGTCAGTATACCGGGGGTGGCACTTGTGTGGAGCATCTGTGGCT
CATCGGTGGGGTTCTTTGTGTCCTTTGGCCTGCCGGCCCTGTTCTACCTG
AAGATCAGGGCCAAGAAGGCCTTTAACATCCGCAAGCTGGCGGCGTGGGT
CATGTTGATTGTCACGTGCTTTGCGAGCGTGCTCTGCACGTACAACGCCA
TCGCAACAGCCGCTTCCAAGCAGTAGCCGCAGCAGGCTTGCCGTTCCATG
CGCCTCTAGCGCCCTGGCTCATCGTTAAAGTCGGGAGGGAGCATCAGCAG
CTTGCATAGTTTTGTGTTGAACGTCTGGTGCACATGGTCCATCCACATGT
CAGACACTGGCATATCAATAGTAAACCAGTGTTCCCCG
back to top

protein sequence of jgi.p|Trimin1|351514

>Trimin1|351514|estExt_Genemark1.C_Ctg_920046 ID=Trimin1|351514|estExt_Genemark1.C_Ctg_920046|Name=jgi.p|Trimin1|351514|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=442bp
MLKTPEIIHPSPGNQSRRSDTVSAVFNLIATVVGGGTLSLPYAFSQASVA
KVAFGPTGGYATTLILLCMTLFVLLAYMILVRDIWSGLIGLLVGWFTENE
AGEVIFTPEESNWVLVGCLIATLPACLAKSLHALRHMCYVGFFSALVLTV
AIGYRCFEYNTEHPEARKQAVAFTSNASQILGAFPIMSLAFMCQFNILSV
HASLVNPTRERLKGIIHSSLGAGGSIYLALGFLGYFYAYGNTQDDILLNF
APSDKVVVWGRLGLGITMLVAIPMLLLPCRDAFEELASQLYEVVTAKFSA
RKTTPLISGNGASSSRGNYSSLNGELGATGSFDTSSMDANVAAALRRVMK
AARHFMTTVGLMIFCLFFAVSIPGVALVWSICGSSVGFFVSFGLPALFYL
KIRAKKAFNIRKLAAWVMLIVTCFASVLCTYNAIATAASKQ*
back to top

mRNA from alignment at Contig_92:483932..492934-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14616 ID=mRNA_14616|Name=jgi.p|Trimin1|351514|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=9003bp|location=Sequence derived from alignment at Contig_92:483932..492934- (Tribonema minus UTEX_B_3156 )
ATGCTCAAGACCCCGGAGATCATCCACCCCAGCCCTGGCAACCAGAGCCG ACGCAGCGACACCGTTAGCGCAGTCTTCAACCTCATTGCCACGGTGGTGG GCGGCGGCACGCTCAGTCTGCCGTACGCATTCTCACAGGCAAGTGTACGC TTGGAAGTGCAGTGCAGTTGAGATTTGCGATCAGGTGAAGAGTATGGGGT TGAGCACCGCCGTGGTGGTGCGAAACAGCTCTCTCAAATCCAGCTCTCTT GGAAGCAGGCGGTGGTGAGGGTCCAGTACATAATGAAGTGGCATGTTGAA GCAGCAGACAACGCAGTGTTTGTTTGCAGCATAGTGGCGCCAACAAGGCC TTCATGAACATGGTCATTGCTTTGATGCTGTGCTCACATGCTTGCATGTC TTTCGCTTACGCTGCAACAGACAGGTTATGTGTTGGGCGCAATCCTGCTG ATTTGCAGCGGCATCGCCACGGACTTCAGCCTTTACATACTGTGCTCCTG CACACGGCGGACGGGAACACAGTCATACATACAGGTACTTGTATGTACAT AGATATACTTAAATGTACTTCAGAAGTATACTTCTTCAGACATATGCATG CAGACGTGCACGTGCTGCTGAGACAAGCTCTGAGACGCGAGTCGCAATAC CTCAAGTACAAGTATAAGTGTGCTGCATACATACATACCATAGAGAGACC GCACTCTTGGCGCTATCACAATGGGTGCACCCACCTACAGATTTCAGTAG TGGTTGCATGGAATCACATTCAGTATGACCACAACGTACAACAACAGTGC TGCGCATCAGGCGCGCTTGTGCCATTTGCATTGATGTCTCATCTGCTGGG CCCTGGTGTTTGGCGGTGTGCTTTATTATGAGAAGGCGCTTCAGGGTACC AATACTTTGACAATGGTCTGTTAGCCATTCACAACTCAACACTTATGTGA TAGGGCCACCGTCGTTGTTGATTCCACGCTGTGCGTGTTGACCATGAGCA TTGCTGTGTTGTATACATTTATATGTATGAAGTGCTTGTTCAAGTATGCC TTGCGGCCATATCCTTAACCCCTCCGCAACACATGCAATGTGTGTGCACT GCACTCACAGGTCGCCAAGGTGGCATTTGGGCCCACAGGGGGCTACGCGA CGACCCTCATACTGCTCTGCATGACGCTATTCGTGCTGCTGGCCTATATG ATACTGGTTCGTGACATCTGGTCTGGCCTCATTGGACTGCTCGTGGGCTG GTTCACAGAGAATGAAGGTGACCACCAGAGCAGTGCTGATGCCAGTGCTA AGTGCATGTCAGTGGACATTATTTGCGTTCAGAACACTGGTTGTTTGCAG CTTGACACATTCGGTCAGCCGTCATCATCACCAGCAGCCTTCGATATGAC TGTATATACGCTTGGGCTATGCATCAGGCTATGCATCAGGGAATCACGTC ACATACATGGCCTATACACAAGTGCATGTGGCAACTGGCGTTATGCAACT ACCAGCAGTACGCCCGCACCATGCCCCAAGTGTCCCTGGTGCGTGAGCAC AATAGGGAGTCACCGGCACTACACTGGCTTTCCAGACCACTTGCCATAAG CTTTGCCATCCACACAGCATAGCAGAGCAATGCTTGAGCATAATTTTATA GTCTGCCACTCATTGCCAGGTTGACAGTCAAACCACAGTGCTGCTATTCC TCTTGCAATGCGTACTATGCAAACTGCATCAATACTGCCCTGTGAGGCTT CCAATCTGTGAATGGACATATCACACTACATAGCAGTTGCTGACACGTCA AAGCCAGAATTGAAATGGCAGCGTGATGTCATTTGAATGCTACCACATGA ACTTGAACGGAGTACTCGTACTTGACTTGCCACCCACGATACACTCGACC TAACGCTCCTGCATTTATACCGCTTGCTACTCCCATCTCAGCTGGTGAAG TCATCTTCACACCTGAGGAGAGCAACTGGGTGCTTGTGGGGTGCCTGATT GCGACACTGCCCGCTTGTCTGGCCAAGAGCCTGCACGCCCTGCGCCACAT GTGCTATGTGGGTTTCTTCAGCGCCCTGGTGCTCACCGTGGCCATCGGCT ACAGGTACAAAGTTGAAGTGTGGTGAAGTTTGTATTGAAGTTTGTGTGGA AGCACGTGTTGAAGCGTTGTCTTCCCTCTTTCAGCTCACATTTTTTTGTC AATTATACATGTGCCCTTTAAGTTCTTGTCACAATCATGTATGCTCAGCT TGTGACGCTTCGTAACGGCAAGCTTCAGTGTGCGTGGTACAGCACTTCGT ATCTGCAGTTTGCGTGGTAAAGTCCTTTCAAAAATGAAATAATTCATATC ACATGCGACACTCAAAAACGAGGAACGTGTGCCGTGCAGATGTGTTGAGT GCGTCAAGTGGTTGACCAGCCGTTTGGTCACATGTATCTGTGTGGCCATT GCACTACAGCAAGTGCAGCAAGAAACACATGCACAGCGCTGTTTTGATTT TTACACATGTAGAGCACATTTCGCAGAGCCCTGCTGCAGCACTGTCAGAG AATATGCCAAGGTGACGCTTCTAATGTTGCTGGGGACTGCGCCATCAGGC AGCTTGACTTGTGCATCACAAACTTCAACAAAGTGCTTTTGAGTCGATTG CATCACAGACCCTGGAATCAGCAGCGCAATCAGCCGCCTGCTCTGCCATC CTGACTGACCGACGTACACAAGTGGTGTGACACATGTACACGTCTCAAGC AATTAAGGCATTTACACCTGCACTGCAGACAGCGTTCTAAGTACCATAGT AATTAACCGCTTGCTTTACCCACCTGACGCTGTGTTGCACCATGTTTGAG GTGCTTTGAGTACAACACCGAGCACCCGGAGGCACGGAAGCAAGCTGTGG CATTCACCAGCAACGCCTCTCAGGTGAAGTTAATAACTACAGCGGCTACT CTCTAAAGCACTTGCAGTAGCAGAACGTTGTAAGATGCTGACTACTTTTG AAGTGCTTCATGTTGGAATACAGGACTGAAACTTGAAGCTGTGTTGCTTG GTCCTACAGAATTGATGTCCAGTTACTGAAGTACATGTATTTACGTGTGT TTGTGCACTGAGCAGACGTATTGCCAGCTGTAAGACTTGAAACCATGAAT CACTTTAGTTCTGACAACGTTGGACAGCAGTGTCCTGCAGTGAAATGCTC TTTTTGGACAGTCTCAAGCTTATGTGGGTCTCAAGCCAAGGCTCAGCCGT GCTCTTCTGTTGATGATGCAAGTTATACTTCAAATACATCTCAATTCTCT ACAATTTTAAAGTGTAGTCTTGTCTTTTGCCGCATTCATTGATGCATTGG GCGCTGCAAAGGACGAGCATTGTAATTTCATTGCATAATTATGCTTCGCA AAGCCGACTTGGTCGCACGCATACCAGCACTTGCAAAGGCAGATAGGCGC ATGCCGGTCAAGCCACTTCCACTGCAACTGCTTGCACACTCTTACACAAA CACGACACTGAGACGCCGGTACACTCTTGCATACAACCTCTCAAACGCCT GTTTCTGCAACTCTGAACTTCATCCCCAGATTCTCGGCGCATTCCCCATT ATGAGTCTGGCGTTCATGTGCCAGTTCAACATACTGAGCGTGCATGCCAG CTTGGTCAACCCAACGCGTGAGCGGCTGAAGGGCATCATACACTCTAGCC TGGGAGCCGGTGAGCTGCACAACTTAGACAGCTATTTCCATGAAGTGCAA GCGCGTGCTATCCTTCAGATTATTGGGGTTTACGCATTCGGAAGTGTAGT AATGTGGTAATTGTCTGTTGCCTGAAGCAATTCAACCTTATAGCCATGTG ATGTGGCATTTATCAACTGCATTAGAAGCCAGTTTTGCACACTATCCTCA ATCTCTTGTGCCCTCACCAAATGCCAAATGCTTTGAAGTAGATGTCAGTG GCGTTCACCTTCAGCATCCATCAAGCACGCTGTCAAGTAGAAAGAGTACG CCGTAGTCGTCGTTGATGCGCTTTGGGGATTCCCTTTACAGCACACTTCG AAGACGTGCTGTGCGACTGACTGCCTTCCACTGCGATAACAGGGGCTCAA CTTTGCACTCAGATACTCAGATAGCCTGTTCTGCAACATGTCTCTAGCTT ATGTGGCACTGCGCATGCCCTGTGCAGACTCAGACCTGACGCATACCACT TGCGGGCGGCTCAAGGGCTTAAAACGCTTTTCTGCTATTGCATTGTGTTG CTTTTTGGCTCTCCTTGCAGTTAGCAAGCCTCACCTGATGCATGAGCTTA AGCACTTTCAGCTAGTTTCATCACAAAGCATTGCCTGCAATGCGCGTGCA GCGCCACATTGCCATAATGTCCATTGTGCCAGCTTGGTTCCCGCATGACG TTTCAAAAGTATACTTCAACCTCCAACATGCTGAACGACGGGACCCTCTA CCTATTGCACAGGATGCCTGTGGTACAGCTCATGACCACTGGCTGTGGTC AGTAGAACGTAGAACTCCCTTCGCAAGGTGTGCTTTGAAATGCTGACTGT TGCGCACGCATGTGTTCTCACAGGTGGCTCCATCTACTTGGCGCTGGGGT TCCTGGGCTACTTCTACGCATATGGCAACACCCAGGATGACATTCTGCTG AACTTTGCGCCATCTGATAAGGTGCGCCCTAAAACCTTCACGTACATGCA TGCAAACATAGTATATACACACTGTAGAACAGAACATATGAGGTGGGCTG CGGTCGCAGCACCATGATGACATGTATATCATTTCATTCGGCTCGCTCTC AATGCGTGTGTGCCTGTGTCGACTAGGTATGCTTGGTAGCCTGGACTTGA TGCAGAAATTACTGTTCGTGGACTTACAACAGTCTCGGGCCTTCGGAGGA ATGCAGATGCAATATATTTACGCGTGGCACGCTCTTCACTCTGTGCATAT ATATATCACTATGTGCATATAGAAGCATTCACTGGTTGCCCATGTTTGTT GACAGGCTACACCCTTTTGTCTGATATCTCAGCAAGCACGTTTGGAGGCC AATCACCAACATTTTATGTTGCAACCATAACCGTAATTGTCACTTGTACT GGCAACACGAATCCCTGCACTGGACACTCTATAGATGTACTCTGCTGCAC CTCAGGTGTCAGCATAGGCACCTGCAATTCACTGTGCGTGCGTATGTGTA TTTGTGTGTGTGTGTGTGAGTGGGTAGGTGGGTGGGTGCGCGCGCGCGAA CAAATCAACAATTTATGTACTCAGATTCCGTGCAAATCCTGATGATGCTG CATCACTGTTGGCCTCATTCCCACCTCATTGCTCTGTGTGTGTATGTGTG TGCCACAGGTGGTGGTGTGGGGACGTCTGGGCCTGGGCATCACCATGCTG GTGGCAATACCCATGCTGCTGCTGCCATGCAGGTGAGGCATACATACATG CACCCCCTACAAGCATGTGGGTCACGTGTTTTCTAGAAGTCCTTGCCCAA GTGAACGCATAGATGGAGAGTCAATCATTCATTGAGAAACAATCAAGGCT TAGGCTTGGGCCTCACCATATTGCATCACAAGCCGACAACATGAGATTTT GCGTAGGGTGCATGTGCGAATGTGGGCCGATGCATGCTGTGTTGGTTTAA CCTCTCGCCGGAGCTTTGTTGCACTTTCGTACTTCCATCACGGGTGAGTG CATCAGGTGCCATAATATGATGATAGTGGTATGCATCTGTTTCTCCAACA AGTGTTAGAAACCAGTGCACTTCCTGGTGGCATGCAATTCCATACACAGC TGACATCATCTGTACCTGCTGCAACTATATCACCTGCTATGCAGGGACGC TTTTGAGGAACTGGCGAGCCAGCTGTACGAGGTGGTAACAGCAAAATTCT CCGCTCGCAAGACTACCCCTCTCATCTCAGGTAATGTCCAATGTTGCTGG CGTACATTCCATACCATACGCTGCAGGCGTGAGTATGTTGCAGTCAGATT TAGCCCACAGACAATGTGCACCACCAAGCAAGTGTCTGAATCTTTGCTTA TGGCAGGGGCCAGATTGTGTTGTCGCTGTGCTCAGTTTATGCCATCAATT TCCTCTCAGCCAGACGGTATAGTTGAGCTGTGTTGCCGCTTTTAACAGAG TGCTTCTCACTTGTCAACAAGCTCGTCCTTCATGTAGCGCTGTGCCTGAC ACTACTTAGGGTTAGGGTTAGTAGGGTTACAGTGTGGTCACGCGAGCAGT AGCTACACAAAGAGCTCGTGCGTGCACCATAACCACATTACAAATCTAAA GTAAGTGGGTGTGCACGGCATGCTCTGATGCAACTCTCATGCGCAGTGCA AGTACTTCAGAGTTTGCCAAAGCAGGATTCACTAAAGCGCTGTTGATGGA TTTGAGCACAGCTGCGTATGGCTTTAGGATGGCAGGCTGCACTTGCGTGC ACGCGTAGTCGCACATTCGGCTTCCTTAGCTGTAGAAGAGTATGTTGGGC AACGGAGACAATTGAAAACTCATTGGAAGTCCGAAAGACGTCGAGCAAGG CAGTGACGTGCTTTCGAGAACTTGAGCCCCACACTAACTGTTATTTCATT TATGGCGCATGACGCTGCAACAGGCAATGGAGCGTCCTCATCACGCGGCA ACTACAGCAGCCTCAACGGCGAGCTTGGCGCAACAGGTGCAACCTCAAGT TGTTGACGTTAATTTGTGGTTGCTGATGTACGCGTGATCCTGTTGAGTGT GTGTGTTGGCGGCATATCCACAGCATGTGGACTCACACCTTCAACGACCG TGTGCAGTGTGTGTGCAGAGCGGTCGTGCAACACGTTGGCACGGTCGGTT GCATGCTCAAACTGTAATGCACACGGTCGTGTGTGTACCGCTGGCGCTTC CGATGCGTGTGGATGCATAATTGAAGATGAAGCAGGCTGTTTCTCATGCT TCACATCTGTGTGGCTCATGCAAGCATGGGGATCTGATGCCCCTGCCGTT GTCATCATCATACACTCAAGATCCGCACAGATGGTCGTGCGCCCAATCGC TTGATCTCTCAAGGTATACAAGTTCTTGCACATCATTGTTCAAGTACTTG TCTGATGCTATCTCCTCTCTTCCACATGTGGTACTTCAACCGTACTTTCC GACCCATGTTCCTGTGTGTGTGCACGTTTCAGGGTCGTTTGACACATCGT CTATGGACGCCAATGTAGCTGCTGCTCTGAGGAGAGTCATGAAGGCAGCA CGCCATTTCATGACAACCGTCGGGCTCATGATCTTCTGCCTCTTCTTTGC CGTCAGGTGAGTACAGTACAGTACCTCGTTGGTCAATCAGGCACACACAC TTATGCTTGTACTTCTGTATATACTATCGCACTCACATTGAGAGCAGGCG CCTGCCAGCGCTTGCTTCCCAAACTTTAAGTTTCTCGGCGTGCTCTTTGC GCGTTAGCTCACCTTTGACATTCATGTTCACCAAGCAATAGTTTGTGGTA TCAGGACAAGCAGTGACCAGTCGTGGCTTGTGAGAACCTCAGGAATGCTA AATGCCGACTGTAATGGGTAGCCTGCATTGAGTGTGATATGCTTTAAAGG CACTGCTCATTTACTTGAATACTTTCTGGTACATCCGTTGCAGCGTGTGA GTGACAGACTTCTTGTGCTTCAAGTTGTGAGAGGGTGACCACGGGCATGA TGCCGCGTTGCAGCACTCGGAGAATTGGAATTTGCAGTGCCACCTTCAAC TTCCGTGATGCGCGGCCAGGCTCAACTGCTGCTGCTGTTAAGCTGATGAC GTGTCATACTGTCTGTTAACGTTTCGCTCAGTCTCACATACTTGGGATTT GAACCAAATCATGTTTGCTCTGCCACACACCAAGGCCCATACCCCCCTGT TGACCCATACCCCCCTGTTGGCTGATTTGATTGTGTTTGCTCCGCTATGC AAAAAGCCCCAATCCCCCCACCCCGGTTGGCTGCAGCACTGCGTACACGC TTCACCTTGCCGGAGCCCCACGCATGCCCTCTCTTATTGTTTGCAGTGCA CACCTGTGGTTCAAGCTCCAGGTTGTTGAGCAACAGCTCAAGCACTGCCG CCTCATGACTCTGCATTTGTGTTTGCGACATATTGCAGTATACCGGGGGT GGCACTTGTGTGGAGCATCTGTGGCTCATCGGTGGGGTTCTTTGTGTCCT TTGGCCTGCCGGCCCTGTTCTACCTGAAGATCAGGGCCAAGAAGGCCTTT AACATCCGCAAGGTGAGGGGGCACAACACATGACTACGCAGCATCGTTTC ACCAAATAGACGAGTCAATTGCACACAGTAAATCTCATTTGCGCCAAGGG AGGATGAGTGCTGATGAGCTGAATACTTCAATCGCAAATCATGGCTGCCA CACACTGCACAACAGTGCAAGATGCAGCGGTACGTAGGTAGCGACGCGGT GGCATAATGCTCAGCACTGTTTGACAACACATTGGTAGGTAAATAGCCAC ACGTGACATGATGTGTTTGCTGTGATACAATTTGTGGCGCACTCGATATC ACGCGCCTGCAGCGATGCACCATCACTTGCACTGGTGCTACAGTAAATGC TCGTGTTTGAGCGCAGTCGTGAGGCAGTTCTACTTCCTGTGCTATTCGGC TGGCATAGTTCTGTATGATATGATTGCAATGCACCCGTGAGTACTGAGGT CACTGCCTCACGTTAATCACTCCTGCTTTGCTTATTTTGCCGTTGCTGCA GCTGGCGGCGTGGGTCATGTTGATTGTCACGTGCTTTGCGAGCGTGCTCT GCACGTACAACGCCATCGCAACAGCCGCTTCCAAGCAGTAGCCGCAGCAG GCTTGCCGTTCCATGCGCCTCTAGCGCCCTGGCTCATCGTTAAAGTCGGG AGGGAGCATCAGCAGCTTGCATAGTTTTGTGTTGAACGTCTGGTGCACAT GGTCCATCCACATGTCAGACACTGGCATATCAATAGTAAACCAGTGTTCC CCG
back to top

Coding sequence (CDS) from alignment at Contig_92:483932..492934-

>mRNA_14616 ID=mRNA_14616|Name=jgi.p|Trimin1|351514|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1326bp|location=Sequence derived from alignment at Contig_92:483932..492934- (Tribonema minus UTEX_B_3156 )
ATGCTCAAGACCCCGGAGATCATCCACCCCAGCCCTGGCAACCAGAGCCG
ACGCAGCGACACCGTTAGCGCAGTCTTCAACCTCATTGCCACGGTGGTGG
GCGGCGGCACGCTCAGTCTGCCGTACGCATTCTCACAGGCAAGTGTCGCC
AAGGTGGCATTTGGGCCCACAGGGGGCTACGCGACGACCCTCATACTGCT
CTGCATGACGCTATTCGTGCTGCTGGCCTATATGATACTGGTTCGTGACA
TCTGGTCTGGCCTCATTGGACTGCTCGTGGGCTGGTTCACAGAGAATGAA
GCTGGTGAAGTCATCTTCACACCTGAGGAGAGCAACTGGGTGCTTGTGGG
GTGCCTGATTGCGACACTGCCCGCTTGTCTGGCCAAGAGCCTGCACGCCC
TGCGCCACATGTGCTATGTGGGTTTCTTCAGCGCCCTGGTGCTCACCGTG
GCCATCGGCTACAGGTGCTTTGAGTACAACACCGAGCACCCGGAGGCACG
GAAGCAAGCTGTGGCATTCACCAGCAACGCCTCTCAGATTCTCGGCGCAT
TCCCCATTATGAGTCTGGCGTTCATGTGCCAGTTCAACATACTGAGCGTG
CATGCCAGCTTGGTCAACCCAACGCGTGAGCGGCTGAAGGGCATCATACA
CTCTAGCCTGGGAGCCGGTGGCTCCATCTACTTGGCGCTGGGGTTCCTGG
GCTACTTCTACGCATATGGCAACACCCAGGATGACATTCTGCTGAACTTT
GCGCCATCTGATAAGGTGGTGGTGTGGGGACGTCTGGGCCTGGGCATCAC
CATGCTGGTGGCAATACCCATGCTGCTGCTGCCATGCAGGGACGCTTTTG
AGGAACTGGCGAGCCAGCTGTACGAGGTGGTAACAGCAAAATTCTCCGCT
CGCAAGACTACCCCTCTCATCTCAGGCAATGGAGCGTCCTCATCACGCGG
CAACTACAGCAGCCTCAACGGCGAGCTTGGCGCAACAGGGTCGTTTGACA
CATCGTCTATGGACGCCAATGTAGCTGCTGCTCTGAGGAGAGTCATGAAG
GCAGCACGCCATTTCATGACAACCGTCGGGCTCATGATCTTCTGCCTCTT
CTTTGCCGTCAGTATACCGGGGGTGGCACTTGTGTGGAGCATCTGTGGCT
CATCGGTGGGGTTCTTTGTGTCCTTTGGCCTGCCGGCCCTGTTCTACCTG
AAGATCAGGGCCAAGAAGGCCTTTAACATCCGCAAGCTGGCGGCGTGGGT
CATGTTGATTGTCACGTGCTTTGCGAGCGTGCTCTGCACGTACAACGCCA
TCGCAACAGCCGCTTCCAAGCAGTAG
back to top