mRNA_14591 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351497
Unique NamemRNA_14591
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A836C7X1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C7X1_9STRA)

HSP 1 Score: 357 bits (915), Expect = 2.490e-124
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 1
Query:    1 MSEVWARLTQEEEELTRVRSEIADLKRALDASPFAPLTDQLSSQQAVQERLERLQARLPTLRKLAFKAELLLPVAVVWSELETSSQEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPTMRLKAVAFPLVSHGDRKPVMVDGFVSAITPSRRVALGVYHAATPTLSGGVVLD 558
            MSEVWARLTQEEEELTRVRSEIADLKRALDASPFAPLTDQLSSQQAVQERLERLQARLPTLRKLAFKAELLLPVAVVWSELETSSQEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPTMRLKAVAFPLVSHGDRKPVMVDGFVSAITPSRRVALGVYHAATPTLSGGVVLD
Sbjct:    1 MSEVWARLTQEEEELTRVRSEIADLKRALDASPFAPLTDQLSSQQAVQERLERLQARLPTLRKLAFKAELLLPVAVVWSELETSSQEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPTMRLKAVAFPLVSHGDRKPVMVDGFVSAITPSRRVALGVYHAATPTLSGGVVLD 186          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A836C874_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C874_9STRA)

HSP 1 Score: 122 bits (307), Expect = 4.950e-29
Identity = 61/96 (63.54%), Postives = 76/96 (79.17%), Query Frame = 1
Query:  256 QEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPTMRLKAVAFPLVSHGDRK------PVMVDGFVSAITPSRRVALGVYHAA 525
            ++EKFL+MKAWGQPLKLVASCPGED+IFLQG+KGTA+DL S+ H+L  M+LKAV FPL  H + +      P+++DGFVSA+ PS RVALG   AA
Sbjct:  493 KKEKFLQMKAWGQPLKLVASCPGEDVIFLQGRKGTAIDLASSWHVLDRMKLKAVTFPLGPHENYRELARTPPLVMDGFVSAMAPSGRVALGSCSAA 588          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A835YQ22_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ22_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 5.690e-15
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 1
Query:  256 QEEKFLKMKAWGQPLKLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPT-MRLKAVAFPLVSHGD-------RKPVMVDGFVSAITPSRRVALGVYHAATPTLSGGVVLD 558
            Q E+FL+M+AWG PLKLVAS P ED+IF+QG+ G  +DL  T   L T M+L  +AFP+    D         P+   G +S IT ++R AL  Y    P   GG V D
Sbjct:  136 QNEEFLEMEAWGTPLKLVASFPAEDLIFVQGEPGPCIDLAHTRGALWTKMKLTVLAFPVPPFIDLNDDVAHEHPLASSGELSGITITQRAALAKYSPELPPSPGGAVFD 244          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A835YSB3_9STRA (DUF218 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSB3_9STRA)

HSP 1 Score: 549 bits (1415), Expect = 1.420e-194
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 2
Query:   83 MIRARPRGAVVGHSVSFLMQVVAARALGSVAANHVLPPAVTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLERYGS 1114
            MIRARPRGAVVGHSVSFLMQVVAARALGSVAANHVLPPAVTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLERYGS
Sbjct:    1 MIRARPRGAVVGHSVSFLMQVVAARALGSVAANHVLPPAVTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLERYGS 344          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S0V9E4_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9E4_9CRYP)

HSP 1 Score: 155 bits (392), Expect = 1.130e-40
Identity = 100/301 (33.22%), Postives = 138/301 (45.85%), Query Frame = 2
Query:  200 VTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLE 1102
            VTG++VHG HL   GW+ +++GD S Q+LGR+     L   EDP  VVF +G SE+DGK+EG+   DYL+ ++ RL+ F   F   DL  L   +  R V +T   NT +EL           + R++LVSSPTH+PRC RDA  ++                                                             GTA +                  WA  +L+C P  T + G+ P DVA+VEPPHRGDRD  LD   L G++NR++++P R R G    L + LE
Sbjct:   86 VTGIIVHGCHLHTDGWERIVFGDPSTQELGRVSQAALLMLEEDPVCVVFGTGGSEKDGKREGDFTRDYLLENFQRLALFN-VFAGIDLGRLERLMRERSVAETTSRNTVEELERGADILREHRIERLILVSSPTHLPRCLRDACVVY-------------------------------------------------------------GTARS--------------ERFPWAARLLVC-PSGTSYTGAKPEDVAVVEPPHRGDRDRNLDRPMLGGIINRLYAVPPRTRRGLVLQLEKQLE 309          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S0Y436_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0Y436_HEMAN)

HSP 1 Score: 150 bits (378), Expect = 5.890e-39
Identity = 97/300 (32.33%), Postives = 137/300 (45.67%), Query Frame = 2
Query:  203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPGFQRDLNELLE 1102
            TG+LVHG HL   GW+ +++GD + Q+LGR+     L   E+P  VVF SG SE+DG  EG+   DY   ++ +L+ F + F   DL+ L   +  R V +T   NT +EL  AG    +  V R++LVSSPTH+PRC RDA  ++                                                             GT              V +    W   VL+ SP  T + G+S  DVA++EPPHRGDRD  LD   L G++NR++++P + R G    L + LE
Sbjct:   53 TGILVHGCHLHTDGWERIVFGDPATQELGRVAQAALLMMEENPVCVVFGSGGSEKDGMMEGKFTRDYFFENFQKLARF-DVFAGADLERLERLMRERSVAETVSKNTVEELELAGEILRKHNVERLILVSSPTHLPRCLRDACVVY-------------------------------------------------------------GT--------------VRSEKCPWGARVLV-SPSGTSYEGASAGDVAVIEPPHRGDRDPALDKPLLSGVINRLYAIPPKKRRGLVLQLEKQLE 275          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S1WQL9_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WQL9_ALECA)

HSP 1 Score: 131 bits (329), Expect = 2.020e-32
Identity = 93/293 (31.74%), Postives = 124/293 (42.32%), Query Frame = 2
Query:  194 PAVTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLPARDRPG 1072
            P  TG+LVHG HL A GW+ ++WG      LGRLPH V LA  E  +VV+F +GASE+DGKKE E    YL  HW  L+ F+   R   L+   A +    VVD +  NT +E+      F  +     + VSSPTH+PRC   A                                                                           ++        G  +A      SP DTC+ G++  DV +VEPPHRGDRD +LD++  H LV R + +P R+R G
Sbjct:   17 PRGTGILVHGCHLKADGWEQIVWGSPPHD-LGRLPHAVLLAWEEQASVVMFGTGASEKDGKKESEYTIQYLWDHWHALAEFEPLHR-VPLEEAEALMRRIAVVDARTQNTDEEVREGLRLFQESNCDHAIFVSSPTHLPRCLACACK-------------------------------------------------------------------------IVEQEPELFEGPIYA------SPSDTCYEGAAAGDVVVVEPPHRGDRDKSLDALKFHELVRRCYGVP-RERKG 227          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A2E1VUF3_9BACT (DUF218 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E1VUF3_9BACT)

HSP 1 Score: 122 bits (306), Expect = 4.410e-29
Identity = 69/150 (46.00%), Postives = 92/150 (61.33%), Query Frame = 2
Query:  203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASER----DGK----KEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDA 628
            TG+LVHG HLDA  W  ++WG     +LGR P  V +A +E   V+VF +GASER    DGK    KEGE   DYL++H+  L+ F  AF   DL+AL  ++    V +++  NTR+E+  A   F   GV R++LVSSPTH+ RC RDA
Sbjct:    3 TGVLVHGCHLDAYDWRGIVWGYPDAGELGRAPKGVLVAHQEQADVLVFGTGASERVVDRDGKRVVMKEGEYTLDYLLQHFDELADFP-AFGKVDLEALRRQIESTAVAESRSQNTREEVVEAAEHFLERGVERMILVSSPTHISRCVRDA 151          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S0YME2_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0YME2_9CRYP)

HSP 1 Score: 124 bits (310), Expect = 1.780e-28
Identity = 63/147 (42.86%), Postives = 88/147 (59.86%), Query Frame = 2
Query:  200 VTGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALW 640
            VTG++VHG HL   GW+ +++GD S Q+LGR+     L   EDP  VVF +G SE+DGK+EG+   DYL+ ++ RL+ F   F   DL  L   +  R V +T   NT +EL           + R++LVSSPTH+PRC RDA  ++
Sbjct:   86 VTGIIVHGCHLHTDGWERIVFGDPSTQELGRVSQAALLMLEEDPVCVVFGTGGSEKDGKREGDFTRDYLLENFQRLALFN-VFAGIDLGRLERLMRERSVAETTSRNTVEELERGADILREHRIERLILVSSPTHLPRCLRDACVVY 231          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7S0HX73_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0HX73_9CRYP)

HSP 1 Score: 117 bits (294), Expect = 1.070e-27
Identity = 82/265 (30.94%), Postives = 117/265 (44.15%), Query Frame = 2
Query:  263 GDESQQQLGRLPHFVKLAAREDPAVVVFSSGASE-RDGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGTAAATIDSAVMGVTDVTASGLAWAPSVLLCSPCDTCWPGSSPSDVAIVEPPHRGDRDVTLDSVPLHGLVNRMFSLP 1054
            G E   +LGR+P  V +A  E+ AVV+F +G S+  DG  EGEV   ++  ++ RL +FK+ F+D DL  L  R+   C V+T+ +NT QEL   G       V +++LVSSPTH+PRC RDA  ++ G                                                                              S  ++A ++  C P DTC+  S+  DVAIVEPPHRGDR+   D  PL+  +N+ F +P
Sbjct:    1 GREELNELGRIPQAVLVAYHEEAAVVLFGTGGSKSEDGVLEGEVTMQFMFENFERLKNFKQ-FQDIDLGRLRERMAEICKVETKSLNTLQELEMCGEIMHNQQVQKIILVSSPTHLPRCIRDAKKVFDG------------------------------------------------------------------------------SKFSFANAIFAC-PSDTCYMNSTVEDVAIVEPPHRGDREKEFDRWPLYKYLNKFFKVP 185          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A1F5PJ44_9BACT (Uncharacterized protein n=1 Tax=Candidatus Doudnabacteria bacterium RIFCSPHIGHO2_01_FULL_50_11 TaxID=1817828 RepID=A0A1F5PJ44_9BACT)

HSP 1 Score: 119 bits (297), Expect = 1.110e-27
Identity = 61/151 (40.40%), Postives = 90/151 (59.60%), Query Frame = 2
Query:  203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASERDGKKEGEVIYDYLVRHWPRLSHFKE-----AFRDCDLDALAARLLPRC-VVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASAL 637
            T +L+HG H+DA GW+ ++WGD  +  LGR+P  + LA  E+  ++ + +GASER+GKKE ++I+ Y +RH   L    E      +R         +LLP+   +D    NT QE+ AA A     G+TR++LVSSPTH+ RC +DA  L
Sbjct:    6 TAILIHGCHVDAEGWERIIWGDPEKGLLGRIPTGIALALSEEADLIFWGTGASERNGKKESQIIFQYALRHLEELPALFERAGRVTYRKYPTPFELEKLLPKISYIDLVTQNTAQEVEAAAAECRARGITRLILVSSPTHIGRCRQDADKL 156          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: L1J676_GUITC (DUF218 domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J676_GUITC)

HSP 1 Score: 118 bits (295), Expect = 2.730e-27
Identity = 62/147 (42.18%), Postives = 88/147 (59.86%), Query Frame = 2
Query:  203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGASER-DGKKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALW 640
            TG+LVHG HL A GW+ + WG E   +LGR+P  V +A RE   +V+F +G S+  DG  EGE    Y+  ++ RL +F+E F + DL  L   +   C  +T+ +NT QEL   G       + +V+LVSSPTH+PRC RDA  ++
Sbjct:   65 TGVLVHGCHLQAEGWEEIAWGREETNELGRIPQAVLVAHREGADMVLFGTGGSKSSDGVMEGEYTMRYMFDNFERLKNFRE-FEEADLARLKETMRLICRSETRSLNTVQELELCGQIMHNEQIQKVILVSSPTHLPRCMRDAKVVF 210          
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Match: A0A7V7MMY6_9BACT (DUF218 domain-containing protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V7MMY6_9BACT)

HSP 1 Score: 117 bits (293), Expect = 3.270e-27
Identity = 68/156 (43.59%), Postives = 91/156 (58.33%), Query Frame = 2
Query:  203 TGMLVHGYHLDAAGWDHVMWGDESQQQLGRLPHFVKLAAREDPAVVVFSSGAS----ERDG----KKEGEVIYDYLVRHWPRLSHFKEAFRDCDLDALAARLLPRCVVDTQPVNTRQELAAAGAAFARAGVTRVVLVSSPTHVPRCARDASALWLG 646
            TG+LVHG HL+A  W  + WG   + +LGR+P  V +A   +  ++VF +GAS    E DG    K+EGE    +L+R +  L+ FK AF   DL AL  R+    V D   +NT QE+  A   F R G+  +VLVSSPTH+PRC RDA A  +G
Sbjct:    3 TGVLVHGCHLEAYDWRGIAWGYPDRNELGRIPKGVLVALETNADLLVFGTGASCRLVEEDGQQIVKREGEYTLGFLLRRFEELAEFK-AFEGVDLAALRKRVEGIAVADVDSMNTEQEVRNAARMFLRQGIEGMVLVSSPTHLPRCLRDACAALVG 157          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836C7X1_9STRA2.490e-124100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A836C874_9STRA4.950e-2963.54Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YQ22_9STRA5.690e-1544.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
BLAST of jgi.p|Trimin1|351497 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YSB3_9STRA1.420e-194100.00DUF218 domain-containing protein n=1 Tax=Tribonema... [more]
A0A7S0V9E4_9CRYP1.130e-4033.22Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0Y436_HEMAN5.890e-3932.33Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
A0A7S1WQL9_ALECA2.020e-3231.74Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A2E1VUF3_9BACT4.410e-2946.00DUF218 domain-containing protein n=1 Tax=Planctomy... [more]
A0A7S0YME2_9CRYP1.780e-2842.86Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0HX73_9CRYP1.070e-2730.94Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A1F5PJ44_9BACT1.110e-2740.40Uncharacterized protein n=1 Tax=Candidatus Doudnab... [more]
L1J676_GUITC2.730e-2742.18DUF218 domain-containing protein n=1 Tax=Guillardi... [more]
A0A7V7MMY6_9BACT3.270e-2743.59DUF218 domain-containing protein n=1 Tax=Planctomy... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_92contigContig_92:196003..200095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351497|estExt_Genemark1.C_Ctg_920017
Hectar predicted targeting categoryother localisation
TranscriptId351819
TrackFilteredModels1
ProteinId351497
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351497gene_14591Tribonema minus UTEX_B_3156 geneContig_92 196003..200095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351497Trimin1|351497|estExt_Genemark1.C_Ctg_920017Tribonema minus UTEX_B_3156 polypeptideContig_92 196003..200095 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14591_5exon_14591_5Tribonema minus UTEX_B_3156 exonContig_92 196003..196037 -
exon_14591_4exon_14591_4Tribonema minus UTEX_B_3156 exonContig_92 196696..196872 -
exon_14591_3exon_14591_3Tribonema minus UTEX_B_3156 exonContig_92 198077..198164 -
exon_14591_2exon_14591_2Tribonema minus UTEX_B_3156 exonContig_92 198688..198753 -
exon_14591_1exon_14591_1Tribonema minus UTEX_B_3156 exonContig_92 199904..200095 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14591CDS_14591Tribonema minus UTEX_B_3156 CDSContig_92 199904..200095 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14591 ID=mRNA_14591|Name=jgi.p|Trimin1|351497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=558bp|location=Sequence derived from alignment at Contig_92:196003..200095- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCAGAGGTGTGGGCGCGCTTGACACAGGAAGAGGAGGAGCTGACGCG
CGTTCGGAGCGAAATAGCTGACCTCAAGCGCGCTCTTGATGCGAGCCCTT
TTGCGCCACTGACCGATCAACTCAGCTCCCAGCAGGCCGTGCAGGAGAGG
CTCGAGCGCCTGCAGGCAAGGCTCCCCACATTGCGAAAGCTGGCCTTCAA
GGCAGAGCTGCTGCTGCCGGTGGCGGTTGTGTGGAGCGAGCTGGAGACGT
CCAGTCAGGAAGAAAAGTTCCTGAAGATGAAGGCCTGGGGTCAGCCGCTG
AAGCTTGTGGCAAGCTGCCCCGGCGAAGACATCATCTTCCTTCAGGGAAA
GAAAGGGACCGCAGTTGACCTGACATCAACCTGCCACCTGCTGCCCACGA
TGAGGCTCAAGGCTGTCGCATTCCCCCTGGTTTCACATGGGGACCGCAAA
CCCGTCATGGTTGATGGGTTTGTGTCAGCCATCACCCCCAGCCGCCGAGT
GGCACTCGGCGTTTACCATGCAGCTACGCCCACTTTATCAGGCGGGGTAG
TGCTGGAC
back to top

protein sequence of jgi.p|Trimin1|351497

>Trimin1|351497|estExt_Genemark1.C_Ctg_920017 ID=Trimin1|351497|estExt_Genemark1.C_Ctg_920017|Name=jgi.p|Trimin1|351497|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=186bp
MSEVWARLTQEEEELTRVRSEIADLKRALDASPFAPLTDQLSSQQAVQER
LERLQARLPTLRKLAFKAELLLPVAVVWSELETSSQEEKFLKMKAWGQPL
KLVASCPGEDIIFLQGKKGTAVDLTSTCHLLPTMRLKAVAFPLVSHGDRK
PVMVDGFVSAITPSRRVALGVYHAATPTLSGGVVLD
back to top

mRNA from alignment at Contig_92:196003..200095-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14591 ID=mRNA_14591|Name=jgi.p|Trimin1|351497|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4093bp|location=Sequence derived from alignment at Contig_92:196003..200095- (Tribonema minus UTEX_B_3156 )
ATGTCAGAGGTGTGGGCGCGCTTGACACAGGAAGAGGAGGAGCTGACGCG CGTTCGGAGCGAAATAGCTGACCTCAAGCGCGCTCTTGATGCGAGCCCTT TTGCGCCACTGACCGATCAACTCAGCTCCCAGCAGGCCGTGCAGGAGAGG CTCGAGCGCCTGCAGGCAAGGCTCCCCACATTGCGAAAGCTGGTGGCCAC GTACGCAAGGCGTGTCCACGTTTTGGAGCAGCAGCAGCAGAGTCACGCAG GTGGGTGCGCAGAGTTTATGACTTGAAGAACACATAATTTTGAGGCCTTG TTGACTTGAAGGCTTTGTTGATGAACGGCCATGCCACTGAACACTGCAAC TGAGCGCCTATGCTAGGTATCTCGCACGTCGGTCATGAGCAGCTAGCTCC TCAGCTCGTGCAGGTCAGGCTGGTATCGTGGCGTACACGTTGGGGCTGCT GCTGCTACTGATGACATCTTCACAACTTCAACTTCATGTTGAAGTGGGCC CGTCAAGGGTCTTACCCCTACTTCAAGGCAAATTTGAAGTTTCTGCTGCT GCTGCCCAGAAGTTCTGTGTTGCACATGGGATGCGGTCCCACACAGCGCT GAGGCCCCTGCTGGTCCTGGTACTCGTAGTCTTGCATTCGGTGCTTCCAG GCTTTGGTAGTCCGCTGCATCAACAGCGATGAGTATGAGCAACTCTGAAC AGCCTGCACAACGCTGTGTCTGCCGCTCCTGTCACAACAGCGCAGCGGAG GATGAGTGCTCTGCGCGTTCCGTCCACGCTATGACAAGCGCTCACGACAC CGCGCACTAGCTGCCTGTAGGCTTCCACCCACCGAATGATTGGTGCACTG GATTTGTCCCATTCGCTTTCGCTCATCTCACCTGCGCACCGTCTGGTGCC GCTGAGTTGCTTCATTGTATATCGTATTCAAAGCGCAGTCTCATGTGTGT AGCGCACCACACACACAATACATGAATTCCGTTTAAGTATTGGTATACAG GTGGAGAATGAGGCATCTAAGCATTCCTGCCCCCCCCCCCCCCCCCCCCC CCCCCCCCCGGCTGCAGCGTTGTTATGCTGCCTATATCCGCACAATCACG GTACTTGCGTCGTGCTTGCTTGTGCCGTTATACGATATTTGTTGTCATGC AATGAGCTTGGAGGTAGCCTGGCCTGTGCTGGCACTGGCGTCTGATCAAG TCCACAGGATGCCTCTTGCAATGCGCCTTTGCCGCACTTTGTTGCCCGTG ACTCCACACTTCTTATGCCTCCCATTGACTGCAAGCTCCAGTGTAATGTT GCTGACAGCCCCTTGCGTTGGCATGCGCCTGTGTCATTGCAGGCCTTCAA GGCAGAGCTGCTGCTGCCGGTGGCGGTTGTGTGGAGCGAGCTGGAGACGT CCAGTCAGGTGACTCACTGACTCAGACTCAGAGGTTGACTCTCTCTATGC TCAAGCCTGAACAAGGCATGCCGGTTGTCTGGTATGGTGCTGCGGCATCT GAGCGGCTGATGCGCTTGAACAGCTGTGAAGTGCACCGTCGAAAGAGGAG CATGTTGATCGGGATCGTCATGTTGAAGGTGTCGGTCGGTTGGTTTCCAT AGTCAACGGTCAAGCATCTGCGCGTGGGAACACGTAGGTTGTGATGATCA TACGCCCGAGTGGCTCAATGGCCGGCAGTCCAGAGGTTGCTGGCATACAT GCTGGTCGCAAGCACTCTGATGAAAGTGCTAATCGCCACCTCGCTACTAC TTGCTTCTCATACCCCCGCATGCTCTCTCCTCCCCTTCTGCTGTCAGAGG CAGCCCATGAGCGCATGAGGGATGCTGTGGGTTGCGTTGGCCTCGTCACG CATCATGCAGCGCACGCAGGCACCGTAGTCCGGCTCACTGAAGATGGCCT TTGCGTCAGCGCTGCCCATGTGTTCCTGGAGGAAGAAAAGTTCCTGAAGA TGAAGGCCTGGGGTCAGCCGCTGAAGCTTGTGGCAAGCTGCCCCGGCGAA GACATCATCTTCCTTCAGGGTGAGTAGCGGTGAAATCTGGTCATACCTAT CATTTGGTCAGGTGCTGCTGCGCTCAGTAGCCATGCTTTCTGCATGCATA GTGTTTTTAATAACACCATTTACGCAATGCACGTGTACTGTTGATGACAT GTCAGCAGCAATGTCAACGCGATGAGCATGCATGTTTTGGTCGGTGTGAT TGTGTTGTGCATGGCTTCAGAGTGAAGCGCCTGCCTGCCATCAGTCATGA TCTCAGCGCAGTCACCAACAAACTCTGCAGCACACCCACATTTGAGGACC AAGACACGTACATTTTGTCGTTCAGTGCGTGCTGGCAGGCGGCAGCAGCA GCGCAGCAGTGCTTGAGCATTCGAAGGATTCTGGCGGTAGACGTCAGCCG CACTTAAGGCCACTTGAAGTGTCTTGGTATGCTATGGAGGCAAACGTCGC GCGTGCAAGCAGAAGATACTGGAAGCAACTGCTCATGACCGCAGACTGCC AGAGGGTCACGCTTCGCTAAGACGCCACGGCACGTGCATCACATTCCAGT GTCTTTCGTGGTGATGGGGTGTACAGTGACCCGGAGGCAGCAGCAAAGAA GCTTGCGTCGCACGAGTGTGGGCAACGTACAAGCTAGACGATCTGCTTGT TTTAGAATGCCCCAGTCGCTCATGCTCTGTGCTCCGGCCAGACTTGTGCA ATTGTGCAACCATTCGATGAGCAGGCTAGCGGGAGGCGCCCAACACGTTT TGTGTCAGAGATGGCATTGCATACTTTCACGGTCACCTCCTTTCTCGCCC CCCTCTCCCTCCCACACACACATCATTTGCCCCCCCAACATGTGCTTTGT AGTCCAAGCACAACTGTAATCTGCAGCTACCTCTGCTGTTGGTGATGGGC GAAGTATCAGCATGATGCTGGGAAGGGAAGGGAAGGATGGCAGCCCCTCT CCATATGTCTTAAGCCGGGGCGCGTGCTGTTCTGCTACATGAGCATCAGG GTCGCGCCTGAATTTATTTACAATGTGCTTCTAGTGATTTCAGTTGCATT CTGCCTGATCAGTATGCCCGCATGTAGGCTGGTCATGAATGTCAAGGCTG GTGCGTTAGCTCCAAAGATAAGTGTTTGTGTCGACCAGGCGATCCATTCA TCATACTACCTCACTTTTGGTCCACAATGATTGTGATGTGAGCTCAAACT CTGCATGCTGCTTTAACGCGCAGGAAAGAAAGGGACCGCAGTTGACCTGA CATCAACCTGCCACCTGCTGCCCACGATGAGGCTCAAGGCTGTCGCATTC CCCCTGGTTTCACATGGGGACCGCAAACCCGTCATGGTTGATGGGTTTGT GTCAGCCATCACCCCCAGCCGCCGAGTGGCACTCGGCGTTTACCATGCAG GTCAGAGAGCTGTCATCCTACTAGAGGCAGCCAGTTGTGTAGTAGCTGCA GGTCAGGTAGCATTGGCTATGAAGGGATTCAGCACGCACTGCGCAGCTCA GCTTGTGCCATCAGCACATCCGGTGCATGATGGCGGTAGCGTCACTGTTG CATCAGAAGACAATCATGTAGGTACCTCCTATTGCGCTTTCTTGTGTCCA GCTCCATAGGTTTCCTTGTTTTGTGTGCGTTACGTTGATGATGCAAAATG CGCAGCTCCAGCTTCCAAGCAATGCAGAGTGCGTGGCATAGCACTATTGC TTGCTTGCTGGTGGTTGGTCTCTGGCACTGTGTGCGGGCTTTTCACAATG TACTTGCCAATGGCGTGTTTGCGTGCCACAGCCACTTTGCTCCTGCCAGC TGATGTGCCACTCAGCATGTACCTGGATTGCTGCCCAGCGTGTCAGGTGC ACGCAGACCTGCAGCAGCAGCAGCAGCGGCACCAGTCGCTCGCTCAACTG GTCTCAACAACAGACCGTCCTGCTGCTGCTAATCTGCTTGAATGTGTCAT AACACCGAGCAACGCCTGTCATCATTGCCAATTGTATCATGTCTTGCCAC TTTCAGGCTGCACATTCAATGTCATCATGTTGGTCTCGATGCCATCTCTT GTGTGCAGCTACGCCCACTTTATCAGGCGGGGTAGTGCTGGAC
back to top

Coding sequence (CDS) from alignment at Contig_92:196003..200095-

>mRNA_14591 ID=mRNA_14591|Name=jgi.p|Trimin1|351497|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=558bp|location=Sequence derived from alignment at Contig_92:196003..200095- (Tribonema minus UTEX_B_3156 )
ATGTCAGAGGTGTGGGCGCGCTTGACACAGGAAGAGGAGGAGCTGACGCG
CGTTCGGAGCGAAATAGCTGACCTCAAGCGCGCTCTTGATGCGAGCCCTT
TTGCGCCACTGACCGATCAACTCAGCTCCCAGCAGGCCGTGCAGGAGAGG
CTCGAGCGCCTGCAGGCAAGGCTCCCCACATTGCGAAAGCTGGCCTTCAA
GGCAGAGCTGCTGCTGCCGGTGGCGGTTGTGTGGAGCGAGCTGGAGACGT
CCAGTCAGGAAGAAAAGTTCCTGAAGATGAAGGCCTGGGGTCAGCCGCTG
AAGCTTGTGGCAAGCTGCCCCGGCGAAGACATCATCTTCCTTCAGGGAAA
GAAAGGGACCGCAGTTGACCTGACATCAACCTGCCACCTGCTGCCCACGA
TGAGGCTCAAGGCTGTCGCATTCCCCCTGGTTTCACATGGGGACCGCAAA
CCCGTCATGGTTGATGGGTTTGTGTCAGCCATCACCCCCAGCCGCCGAGT
GGCACTCGGCGTTTACCATGCAGCTACGCCCACTTTATCAGGCGGGGTAG
TGCTGGAC
back to top