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Homology
BLAST of jgi.p|Trimin1|351469 vs. uniprot
Match: A0A836C8K9_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K9_9STRA) HSP 1 Score: 551 bits (1420), Expect = 3.670e-197 Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 1
Query: 1 MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGADEALTSPGQAVQCVRYIRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSVSRKTERDEWGMETQELSRQEGTARRMTLSGARGSIVLDLSGAEYLELETVQDDFENSQDVGSDGRRTLGYRTTEEXXXXXXXXXXXXXXXXXVLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVALLAVTNRNYESLRYDQIAAASAARAAPSAPARAQRRR 930
MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGADEALTSPGQAVQCVRYIRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSVSRKTERDEWGMETQELSRQEGTARRMTLSGARGSIVLDLSGAEYLELETVQDDFENSQDVGSDGRRTLGYRTTEEXXXXXXXXXXXXXXXXXVLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVALLAVTNRNYESLRYDQIAAASAARAAPSAPARAQRRR
Sbjct: 1 MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGADEALTSPGQAVQCVRYIRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSVSRKTERDEWGMETQELSRQEGTARRMTLSGARGSIVLDLSGAEYLELETVQDDFENSQDVGSDGRRTLGYRTTEEXXXXXXXXXXXXXXXXXVLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVALLAVTNRNYESLRYDQIAAASAARAAPSAPARAQRRR 310
BLAST of jgi.p|Trimin1|351469 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI) HSP 1 Score: 139 bits (350), Expect = 4.370e-35 Identity = 104/297 (35.02%), Postives = 146/297 (49.16%), Query Frame = 1
Query: 1 MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGAD-EALTSPGQAVQCVRYIRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSVSRKTERDEWGMETQELSR----------------------QEGTARRMTLSGARGSIVLDLSGAEYLELETVQDDFENSQDVGSDGRRT-LGYRTTEEXXXXXXXXXXXXXXXXXVLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVA 819
+ QS+ LR G D A L VGDYV +RG V A L SP + V CV Y VRV+D R + SV G + + G I S + L + + + + ++W Q +S Q GT +R R + +DL+GAE+ +E V +FE + G RT LGYRTTEE VL VG+ +IV+GE+G + +V+R + P ++LD+KT S++RPFVAS SE LL IER+GRIYFW A+P++ G+A
Sbjct: 35 LNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLQSPMKRVACVSYRVNVVRVVDSRTAK--KKASVGG-----IWGVLGGIASVVPWLCS--FAATAQVDTEKWDTVYQAISSRGETVQIFLDDHDSIADLEAVAQAGTGKR------RPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEE-----------------VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLA 299
BLAST of jgi.p|Trimin1|351469 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.980e-17 Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 1
Query: 577 VLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVA 819
VL VG+ +IV+GE+G + +V+R + P ++LD+KT S++RPFVAS SE LL IER+GRIYFW A+P++ G+A
Sbjct: 3 VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLA 83
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| ProteomeId | Trimin1|351469|estExt_Genemark1.C_Ctg_910027 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | Mitochondrial ubiquitin ligase activator of NFKB 1 |
| Ec32 ortholog | Ec-26_001140.1 |
| TranscriptId | 351791 |
| Track | FilteredModels1 |
| ProteinId | 351469 |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13509 ID=mRNA_13509|Name=jgi.p|Trimin1|351469|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=933bp|location=Sequence derived from alignment at Contig_91:395757..400470+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.
ATGCGCCAGAGCCGCATGCTGCGCAACGGCGAGCGCGTGCCCATCGACCC CGCTGTGCTCAAAGTGGGCGACTATGTCACGCTGCGAGGCGTGGTGGGTG CGGACGAGGCGCTGACCAGCCCGGGACAGGCCGTGCAGTGCGTGCGGTAC ATCAGGCGGAAGGTGCGCGTGATTGACCAGCGCATGGGCAGGACCACCAA CACGCAGAGCGTCCATGGCTACGGCGCGCACACCGTGTCCAGCCTCTTTG GCGCCATCGTGTCCTCCATGGGTGGCCTGCTTGGCGGGGGTCTGAGCGTA TCGCGCAAGACGGAGAGGGACGAGTGGGGCATGGAGACACAGGAGCTGTC GCGGCAGGAGGGCACGGCGCGGCGCATGACACTCAGCGGCGCGCGCGGCT CGATCGTGCTAGACCTGTCCGGCGCAGAGTATCTGGAGCTGGAGACAGTG CAGGATGACTTTGAGAATTCGCAAGACGTGGGCAGCGACGGGCGCCGCAC CCTGGGGTATAGGACCACGGAGGAGGACGTGGGCAGCGACGGGCGCCACA CGCTGGGGCACAGGACCACGGAGGAGGTGCTGCGCGTGGGAGCGTCTATG ATTGTCATTGGAGAGATTGGTCTGACAGATCATGATGGTCAGGAGACTCT GGTGATCCGCAGCTCCATGCCTAAGAACATGTTGGACATCAAGACGCAGA GCGTGGCGCGCCCCTTTGTGGCATCACCGCTCAGCGAATCGGACCTGCTG AACCGCATCGAGCGCGCGGGCCGCATCTACTTCTGGTGCGCGGTGCCAGC GCTCGTCACCGGCGTCGCGCTGCTCGCTGTCACCAACCGCAACTACGAGA GCCTGCGCTACGATCAGATTGCTGCGGCGAGCGCTGCGCGGGCGGCGCCG TCCGCGCCGGCGCGCGCGCAGCGGCGCCGCTGA back to topprotein sequence of jgi.p|Trimin1|351469 >Trimin1|351469|estExt_Genemark1.C_Ctg_910027 ID=Trimin1|351469|estExt_Genemark1.C_Ctg_910027|Name=jgi.p|Trimin1|351469|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp
MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGADEALTSPGQAVQCVRY IRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSV SRKTERDEWGMETQELSRQEGTARRMTLSGARGSIVLDLSGAEYLELETV QDDFENSQDVGSDGRRTLGYRTTEEDVGSDGRHTLGHRTTEEVLRVGASM IVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLL NRIERAGRIYFWCAVPALVTGVALLAVTNRNYESLRYDQIAAASAARAAP SAPARAQRRR* back to topmRNA from alignment at Contig_91:395757..400470+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_13509 ID=mRNA_13509|Name=jgi.p|Trimin1|351469|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=4714bp|location=Sequence derived from alignment at Contig_91:395757..400470+ (Tribonema minus UTEX_B_3156 ) ATGCGCCAGAGCCGCATGCTGCGCAACGGCGAGCGCGTGCCCATCGACCC
CGCTGTGCTCAAAGTGGGCGACTATGTCACGCTGCGAGGCGTGGTGGGTG
CGGACGAGGCGCTGACCAGCCCGGGACAGGCCGTGCAGTGCGTGCGGTAC
ATCAGGCGGAAGGTGGGTAGGTATGTAGAGGACTGAATGGGTATGGTAGT
AACCGATATCATATTAAAATATAGCTTTTAATATGTAAGGTAGGTAAGTA
GATGTGCAGTGCGTGCGGTACATCAGGCGGAAGGTGGGTGTGTAGAGGGC
TGTATGGGTAGTTACAGTGGTAATTGATAAGGTAGGTAGATAAGGTGGTC
ACATGGTCACATGGGTAGGTACCATGGCAACATGGGTAGATGTTGCCATG
TAGATGGGTATGTAGGCTATACCTGTGTCTCGGGGTCAGGGTAGTTGGTT
GGTAGTTGGGGCTGTGGTCACCTGCTTGTCCGCATTGAAGTTGGCGCAGC
GTCGGTGCCATGAGATGGGGCGCATGCATCGCAGTGAAGTCTTTGGATTC
ATTGTGGCCTTGACAGCAAGGCATGCTGATGGTGAGTGCCTGATGGCGAA
ATGTCTACTTCAAGGTGAAGTTGACGTTGATCTGAAAGAGTTGCTTTGTG
ACGTTCAGGATCATCATGATGATGTCCATTGGCATTGAAAGCCAGGTCGC
TAGCTCATCTTAGAAGGACAGGCAAGAGCTGGTCCTCTTCTCAGCGTTGA
CACCAGCAGTGACGCGTTAACGCCTTCGCCCCCTCCACAGCTCTCATTTT
GGCTGCTACGATGTGCCCAGCATACGAACATACACTGCTGCCAAAACCCC
TGCCACTGCTCACAAGCACCTTGTTATATTTGGAAAACTCCATATGTACA
TGTACTTCAGTCGCCATTTCAGCCGCAATGCACCAGCACAACTTGAAGCT
GTGTTTCAGCTGTCGGCCAGCCGCTTACAATGACATGTAATGCAGCCATG
AAAAGCGGATTATACTTGACATGGTCTGTGAGATACTCCCTTGAGTATAC
CTTCATGCCACTGCTAACAGCAGCGCTCTGTGCCCCAGGCGCAAATGATA
CAATGCGGTGATACAGCACTGATCATTCCACGAACGCATGTCGCATGCAG
GCAGACTTGCACACCTCCTCTGCCCGCCCCTCTGCAGCGCTTGCACACCT
TCCTGTCACCCCTTCAGTCGAGAACGTCAGACTACAGCCCTAACCCTTAC
CCTAACCCTAACCCTTGGCGCACACTCTGTACGTTACTCCAGTGGCGTCA
GCGTGGCTGCTATCCTCTGCTGCCAATTTCAAACAGCGCTGACACACACA
CCCCTCGCACCGCCCCCGCACCGCACTCACCGTCCCCCCTGCTCCCCCAT
GAAGTTACCCTCTGCCAGATTCAAACAGCGCTCACGCCCCCCCCGTACCC
CCTTGCACCGCACTCACTGCCCCCCCCCTGCTCCCCCCTGAAGGTGCGCG
TGATTGACCAGCGCATGGGCAGGACCACCAACACGCAGAGCGTCCATGGC
TACGGCGCGCACACCGTGTCCAGCCTCTTTGGCGCCATCGTGTCCTCCAT
GGGTGGCCTGCTTGGCGGGGGTCTGAGCGTATCGCGCAAGGTCAGTGTGC
GTGTGAGCGCTGTCACATGTTGAGCGGTGCTGTAGCGTTCCTCACGGCGA
GTTCACGGTGCATCAATGCTTCAATGATGATTTATTACACTCTGTCACGC
AAGCTCTCACGCAAGGTCGGTGGGTGAACAGTGCCGCGTGTTGAGCGATG
CTGCGCGGCAGAGTTTCCCATGGCGGCTGTTTATTATCAGTGATGAGTTC
ATCACACTTTGTCACGCAAGGTCGGTGGGCGAGCGCTGCCGTGTGCTGAG
CGATGCTGTACAGTGCAGAGTTCCCCACGGCGCGTTCATGATGCATCGTG
ATGGTTTAACACACTTTGTCACGCAAGTTCGGCGGGTGAGCACTGCCACA
TGTTGAGCCTTGCTGCGCTGCAGAGTATTGACGGCGCCTGCATTATCAGT
GACGAGATTATCACACTCTAAAGTGTGCATGCGTCGGCGCAGCAGCATTC
TTGGCGACCGGGCCACGTGCACCCACGGTGCACCAACGTGAAGTTGCGAT
GTGATTTGCGAGCTGTGTGCTGTCGCGCAGCTCTGCATTGCGTACGAGAC
CAGCATGTCAGGCGCCGAGCATTGGACCAGATAGATGAGACGTGTTGCGG
CCTGGCGAGCACGTGTGCTGCACGCATTCGAGCAGCGTGTGTCGGGCTGC
ATGTCACAGTTGCTGAAACCTCACTCACTCACTCATTCACTCATTCACTC
ACTTGAGAGACGAGTGGAGCTTGGAGATGGGCACAACGCGTGACCCTCAC
CCTCACCCCAACCCCAATGAAACACTCTAACCCTAGCTCTGCCGCCGCTA
AGCGCTGCTGCATCTTCGACTTCGCACCGCGCACTGCAGACGGAGAGGGA
CGAGTGGGGCATGGAGACACAGGAGCTGTCGCGGCAGGAGGGCACGGCGC
GGCGCATGACACTCAGCGGCGCGCGCGGCTCGATCGTGCTAGACCTGTCC
GGCGCAGAGTATCTGGAGCTGGAGACAGTGCAGGATGACTTTGAGAATTC
GCAAGACGTGGGCAGCGACGGGCGCCGCACCCTGGGGTATAGGACCACGG
AGGAGGTATGACCGGGGGGGGGGGGGGGGTGTATGTAGGGGTATGCCTGC
ATGGAGGGGCAACGGGGGGTATGCTGGGTATAGGACTACAGCTTGTTTAT
TGGGGGTACGCTGGGCTACAGGACGGAGGAGGTATGTATGGGGGGTATGT
TTGCTGCAAGCACACGTAGGGTATAGGTCCATGGTGGCGGAGGGAGTTGG
AGACGGTGCAGGTTGAGTGTGAGAGCTTGCAGGACGTGGGCAGCGACGGG
CGCCACACGCTGGGGCACAGGACCACGGAGGAGGTATGTACGGGGGGTAC
AGGGGGTATGCTGGGTATAGGACCACAGCAGGAGTATGGGGGTTGCGCTG
GGGTACAGGTCCACGGAGGAGGTATGCGGGGGCTGCTTGCACGTGTACCT
AGGGTATAGGTCCATGGTGGCTAGGGAGTTAGAATTGGTGCAGATTGAGT
GTGCGAGGTTGCAGGGAGGCTGAAACTTGAAGAAATTGACGGAAGGGCAC
CACCAGGAGTGGAGCCTGCGGCTTCATTTGAGTCAAACGGGATACTGACC
ATTGTGGGGAGCCAAGGGTACAGGATCACGGAGGAGGGATTGGGGGGCTG
TGCTGCGCGGAGGGTGTACAGGGGGTATGCTGCATGTGCGTGGGGTATAT
GACCACAGCGGGAGTTTGGGGGGTATGGTGAGGTCACAGGACACAGGAGT
TATGAGTGGCAGGCTGTATGGAGGGGCATGGGGACTGCTTGGATACTGCT
TGGATGCTGAAGCTGCAGGTGCGCTAGTGAGCTCTACAGAGTCCATGCTA
CCGGGGTATGGGGATGTGCAGTGTGCGCACATGGTAGATAGGTCTGACGG
GGGAAGTATGGGCGAATGCTGCGTGCGCGGCCGCTGCCTGTGCGCAGTGA
ACAGTGCTCAGCGCAGGTGCATTGCATCGTAATAGAGTGTCATTGAGTAC
ACGTATCGGCAGTGCCAAGTTGCTGCTGAAAGTGGTCGAGTGGAAGTATG
AGATACCTGTGTGAAGCGTGCTGATGCTGAAGCAGCGAGGCGCCGTAACG
CATGTTGCCATGACCAAATGCATGCTCCGTATTCCTCTGCTTCGGGTACC
CCAGCTAGCAGGGCTTAAAGTACTGGCATTGAAACCTCTTGATCAACCAT
CACATGCCAATGGGAGTAATCACTTGTAATGTAACATAAATGACTGATGT
TCTGCCGCGAATTGCGCCTTCTCCCTCACCCTAACCCTACACCGAACCCC
AACCCTTGCAGGTGCTGCGCGTGGGAGCGTCTATGATTGTCATTGGAGAG
ATTGGTCTGACAGATCATGATGGTCAGGAGACTCTGGTGATCCGCAGCTC
CATGCCTAAGGTACGTGATTGCATAGTGCAGGACAACATGCATGCTGCAT
GCAGACAGGGTCATGGCAAGTCACACTGATGATTGTAGCACGCCTGCACA
GTTATGCCCTACACCAATCGATGAACTATGGTGGCATTCAATGTTGGCGC
AGCCTTGGTGTCTATGTGCCCCTGTGAAGTGTGCGCCGACACGTGCGATT
TGATTCTTCATCACAGTTACAGGTTGTCCTGTGTGTCCTGCCACACAACC
CCGCGCTAAACTCTGTGCCGCCACCCAATGCACTGAGGCACTGGCGCCGC
ATGAACAAGTTCGCGAACAGAATGCTCTCAACTTGACATGGAACTCCTTG
CCACCCTGCACCGCCGCCTCCCCCCCCCATCCATCCCCCCCCCCTTTTAC
TCATAGAACATGTTGGACATCAAGACGCAGAGCGTGGCGCGCCCCTTTGT
GGCATCACCGCTCAGCGAATCGGACCTGCTGAACCGCATCGAGCGCGCGG
GCCGCATCTACTTCTGGTGCGCGGTGCCAGCGCTCGTCACCGGCGTCGCG
CTGCTCGCTGTCACCAACCGCAACTACGAGAGCCTGCGCTACGATCAGAT
TGCTGCGGCGAGCGCTGCGCGGGCGGCGCCGTCCGCGCCGGCGCGCGCGC
AGCGGCGCCGCTGA back to topCoding sequence (CDS) from alignment at Contig_91:395757..400470+ >mRNA_13509 ID=mRNA_13509|Name=jgi.p|Trimin1|351469|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=933bp|location=Sequence derived from alignment at Contig_91:395757..400470+ (Tribonema minus UTEX_B_3156 ) ATGCGCCAGAGCCGCATGCTGCGCAACGGCGAGCGCGTGCCCATCGACCC CGCTGTGCTCAAAGTGGGCGACTATGTCACGCTGCGAGGCGTGGTGGGTG CGGACGAGGCGCTGACCAGCCCGGGACAGGCCGTGCAGTGCGTGCGGTAC ATCAGGCGGAAGGTGCGCGTGATTGACCAGCGCATGGGCAGGACCACCAA CACGCAGAGCGTCCATGGCTACGGCGCGCACACCGTGTCCAGCCTCTTTG GCGCCATCGTGTCCTCCATGGGTGGCCTGCTTGGCGGGGGTCTGAGCGTA TCGCGCAAGACGGAGAGGGACGAGTGGGGCATGGAGACACAGGAGCTGTC GCGGCAGGAGGGCACGGCGCGGCGCATGACACTCAGCGGCGCGCGCGGCT CGATCGTGCTAGACCTGTCCGGCGCAGAGTATCTGGAGCTGGAGACAGTG CAGGATGACTTTGAGAATTCGCAAGACGTGGGCAGCGACGGGCGCCGCAC CCTGGGGTATAGGACCACGGAGGAGGACGTGGGCAGCGACGGGCGCCACA CGCTGGGGCACAGGACCACGGAGGAGGTGCTGCGCGTGGGAGCGTCTATG ATTGTCATTGGAGAGATTGGTCTGACAGATCATGATGGTCAGGAGACTCT GGTGATCCGCAGCTCCATGCCTAAGAACATGTTGGACATCAAGACGCAGA GCGTGGCGCGCCCCTTTGTGGCATCACCGCTCAGCGAATCGGACCTGCTG AACCGCATCGAGCGCGCGGGCCGCATCTACTTCTGGTGCGCGGTGCCAGC GCTCGTCACCGGCGTCGCGCTGCTCGCTGTCACCAACCGCAACTACGAGA GCCTGCGCTACGATCAGATTGCTGCGGCGAGCGCTGCGCGGGCGGCGCCG TCCGCGCCGGCGCGCGCGCAGCGGCGCCGCTGA back to top
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