Trimin1|351469|estExt_Genemark1.C_Ctg_910027 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351469
Unique NameTrimin1|351469|estExt_Genemark1.C_Ctg_910027
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length311
Homology
BLAST of jgi.p|Trimin1|351469 vs. uniprot
Match: A0A836C8K9_9STRA (RING-type E3 ubiquitin transferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8K9_9STRA)

HSP 1 Score: 551 bits (1420), Expect = 3.670e-197
Identity = 310/310 (100.00%), Postives = 310/310 (100.00%), Query Frame = 0
Query:    1 MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGADEALTSPGQAVQCVRYIRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSVSRKTERDEWGMETQELSRQEGTARRMTLSGARGSIVLDLSGAEYLELETVQDDFENSQDVGSDGRRTLGYRTTEEXXXXXXXXXXXXXXXXXVLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVALLAVTNRNYESLRYDQIAAASAARAAPSAPARAQRRR 310
            MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGADEALTSPGQAVQCVRYIRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSVSRKTERDEWGMETQELSRQEGTARRMTLSGARGSIVLDLSGAEYLELETVQDDFENSQDVGSDGRRTLGYRTTEEXXXXXXXXXXXXXXXXXVLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVALLAVTNRNYESLRYDQIAAASAARAAPSAPARAQRRR
Sbjct:    1 MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGADEALTSPGQAVQCVRYIRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSVSRKTERDEWGMETQELSRQEGTARRMTLSGARGSIVLDLSGAEYLELETVQDDFENSQDVGSDGRRTLGYRTTEEXXXXXXXXXXXXXXXXXVLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVALLAVTNRNYESLRYDQIAAASAARAAPSAPARAQRRR 310          
BLAST of jgi.p|Trimin1|351469 vs. uniprot
Match: D7FLV1_ECTSI (RING-type E3 ubiquitin transferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLV1_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 4.370e-35
Identity = 104/297 (35.02%), Postives = 146/297 (49.16%), Query Frame = 0
Query:    1 MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGAD-EALTSPGQAVQCVRYIRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSVSRKTERDEWGMETQELSR----------------------QEGTARRMTLSGARGSIVLDLSGAEYLELETVQDDFENSQDVGSDGRRT-LGYRTTEEXXXXXXXXXXXXXXXXXVLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVA 273
            + QS+ LR G     D A L VGDYV +RG V A    L SP + V CV Y    VRV+D R  +     SV G     +  + G I S +  L     + + + + ++W    Q +S                       Q GT +R      R  + +DL+GAE+  +E V  +FE  +  G    RT LGYRTTEE                 VL VG+ +IV+GE+G      +  +V+R + P ++LD+KT S++RPFVAS  SE  LL  IER+GRIYFW A+P++  G+A
Sbjct:   35 LNQSKALRAGRVSRPDAASLAVGDYVRVRGTVSAGARTLQSPMKRVACVSYRVNVVRVVDSRTAK--KKASVGG-----IWGVLGGIASVVPWLCS--FAATAQVDTEKWDTVYQAISSRGETVQIFLDDHDSIADLEAVAQAGTGKR------RPRVRVDLAGAEFFSMEQVASEFEAEKATGKVSSRTQLGYRTTEE-----------------VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLA 299          
BLAST of jgi.p|Trimin1|351469 vs. uniprot
Match: A0A6H5LN52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN52_9PHAE)

HSP 1 Score: 86.7 bits (213), Expect = 1.980e-17
Identity = 40/81 (49.38%), Postives = 58/81 (71.60%), Query Frame = 0
Query:  193 VLRVGASMIVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLLNRIERAGRIYFWCAVPALVTGVA 273
            VL VG+ +IV+GE+G      +  +V+R + P ++LD+KT S++RPFVAS  SE  LL  IER+GRIYFW A+P++  G+A
Sbjct:    3 VLAVGSRLIVLGEVGEDPEGAEGDVVLRKAAPSSILDLKTTSISRPFVASIKSEQGLLQEIERSGRIYFWLALPSVAVGLA 83          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351469 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A836C8K9_9STRA3.670e-197100.00RING-type E3 ubiquitin transferase n=1 Tax=Tribone... [more]
D7FLV1_ECTSI4.370e-3535.02RING-type E3 ubiquitin transferase n=1 Tax=Ectocar... [more]
A0A6H5LN52_9PHAE1.980e-1749.38Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022170E3 Ubiquitin ligase MUL1-likePFAMPF12483GIDEcoord: 126..272
e-value: 1.5E-10
score: 40.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_91contigContig_91:395757..400470 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351469mRNA_13509Tribonema minus UTEX_B_3156 mRNAContig_91 395757..400470 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351469|estExt_Genemark1.C_Ctg_910027 ID=Trimin1|351469|estExt_Genemark1.C_Ctg_910027|Name=jgi.p|Trimin1|351469|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=311bp
MRQSRMLRNGERVPIDPAVLKVGDYVTLRGVVGADEALTSPGQAVQCVRY
IRRKVRVIDQRMGRTTNTQSVHGYGAHTVSSLFGAIVSSMGGLLGGGLSV
SRKTERDEWGMETQELSRQEGTARRMTLSGARGSIVLDLSGAEYLELETV
QDDFENSQDVGSDGRRTLGYRTTEEDVGSDGRHTLGHRTTEEVLRVGASM
IVIGEIGLTDHDGQETLVIRSSMPKNMLDIKTQSVARPFVASPLSESDLL
NRIERAGRIYFWCAVPALVTGVALLAVTNRNYESLRYDQIAAASAARAAP
SAPARAQRRR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022170MUL1-like