mRNA_13505 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: A0A835YKE1_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKE1_9STRA) HSP 1 Score: 666 bits (1719), Expect = 1.940e-237 Identity = 343/343 (100.00%), Postives = 343/343 (100.00%), Query Frame = 1
Query: 148 LLCSQEHAVSMLAQMWTTADGAVWNEAAKVDLTPHLSVTSLLVVDPFVACAYEAPFALAAQPXXXXXXXXXXXQQQRGYGGAPGALRGDDAAGALQPPRAERMITVGMIRMLNLRGGEPAAVEVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWKAQGTGFQLGGVLEGHVRGVTCLCMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMAGPLSIEGEQGEYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQMALKPPQQ 1176
LLCSQEHAVSMLAQMWTTADGAVWNEAAKVDLTPHLSVTSLLVVDPFVACAYEAPFALAAQPXXXXXXXXXXXQQQRGYGGAPGALRGDDAAGALQPPRAERMITVGMIRMLNLRGGEPAAVEVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWKAQGTGFQLGGVLEGHVRGVTCLCMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMAGPLSIEGEQGEYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQMALKPPQQ
Sbjct: 50 LLCSQEHAVSMLAQMWTTADGAVWNEAAKVDLTPHLSVTSLLVVDPFVACAYEAPFALAAQPXXXXXXXXXXXQQQRGYGGAPGALRGDDAAGALQPPRAERMITVGMIRMLNLRGGEPAAVEVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWKAQGTGFQLGGVLEGHVRGVTCLCMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMAGPLSIEGEQGEYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQMALKPPQQ 392
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: D8LJM7_ECTSI (C3H1-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJM7_ECTSI) HSP 1 Score: 156 bits (394), Expect = 1.940e-38 Identity = 112/350 (32.00%), Postives = 163/350 (46.57%), Query Frame = 1
Query: 187 QMWTTADGAVWNEAAKVDLTPHLSVTSLLVVDPFVACAYEAPFALAAQPXXXXXXXXXXXQQQRGYGGAPGALRGDDAAGALQPPRAERMITVGMIRMLNLRGGEPAAVEVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWK--AQGTGFQLGGVLEGHVRGVTCLCMVGN--MLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMA-GPLSIEGEQGEYMVTGSADKS--------------------VTALTCFKTSP-SGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPG-PNLYFMSGAEDGKMMMWQM 1155
+MW+T DG+ W + V +T V L V+ + Y P+A A +TV +R+++L G + + V+S +AH IN + K A V ++G +EG I AW + G F LEGH R +T L + MLWS+S+D T+R+W+T T AC+ I G GH+G V +A G + EG EY+++GS D + V+A+ F +P + LLL+G +DG+IA+R+FP F+LAFE+ L VGH PV ALLP P + YF+S EDG MM W +
Sbjct: 131 KMWSTTDGSTWTQVTSVQMTEWRHVGDLQEVEGVLYVGYGTPYAHLAD------------------------------------------VTVDALRVMDLTSG---STQEVVSSVTGFAHASRINRIMVAKVGAEPRV-YTGDEEGRITAWARPSPGAPFAQLAQLEGHARAITSLVSTASNGMLWSSSEDGTIRIWNTGTNACVHTITKDNG-GHEGPVAALAIGQSAAEGTLAEYVISGSKDGTMGVFQAADGGLTYKHKCGTGVSAIAAFDPTPGTSALLLVGYEDGTIAVRNFPEFALAFEIHPTSLYVGHSKPVLALLPFNNPSIDDGYFLSAGEDGTMMCWNV 433
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: A0A5D6YFT1_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFT1_9STRA) HSP 1 Score: 99.0 bits (245), Expect = 1.880e-18 Identity = 88/275 (32.00%), Postives = 119/275 (43.27%), Query Frame = 1
Query: 421 AGALQPPRAERMITVGMIRMLNLRGGEPAAVEVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWK--AQGTGFQLGGVLEGHVRGVTCL--CMVG--NMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTC------------------------MAGPLSIEGEQGEYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQM 1155
AG P R + VGMIR +L + E +SD +P+AH+ + L DAAG LFSGG +GLIR W+ A F+ G LEGHVRGVT L +VG ++L SAS D +A PL + + + D VTAL + + P+LL+G+ DG+I +++ P F+ LSAA NVGH+ VR L GP F S D KM+ WQ+
Sbjct: 188 AGFEGPFPFNRQLPVGMIRGWHLENQQQPPYEFRVSDSLPFAHSQGVLSLTVATDAAGNATLFSGGSDGLIRYWQLDAATNEFKCRGTLEGHVRGVTRLKTFVVGAASILASASMDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPPL-------QQLFKETQDNPVTALCGTQDAAQTPVLLVGTSDGAITVKELPSFAYKTTLSAAA-NVGHQDAVRRLAI----GPLNTFFSVGNDRKMLAWQI 450
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: A0A3M6VA38_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VA38_9STRA) HSP 1 Score: 85.9 bits (211), Expect = 3.140e-14 Identity = 74/263 (28.14%), Postives = 106/263 (40.30%), Query Frame = 1
Query: 436 PPRAERMITVGMIRMLNLRGGEPAAVEVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWKAQGT--GFQLGGVLEGHVRGVTCL--CMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMAGPLSIEGEQG-------------------EYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQM 1155
PP + ++VGM+R NL + E V+S+ +P+AH + LA D G LFSG +G IR W+ F+ GGV+EGHVRGVT L VG + A + + + D VTAL + + P+LLIG DG+I++++ P F+ L A LN GH+ VR + GP+ F S D KM+ WQ+
Sbjct: 173 PPNPK--VSVGMVRGWNLENPQTPPYEFVVSEAMPFAHKMNVQALAVATDRTGNATLFSGSADGCIRYWQMDTAINQFKCGGVMEGHVRGVTRLKTFAVGGVSILAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGLTPPFQQLFKETQDSQVTALCGMQDAVQAPILLIGMADGTISVKELPSFAYKTTLGAD-LNHGHQDAVRRITI----GPSNTFFSTGNDRKMIAWQI 428
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: K3WP21_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WP21_GLOUD) HSP 1 Score: 81.3 bits (199), Expect = 1.030e-12 Identity = 72/256 (28.12%), Postives = 102/256 (39.84%), Query Frame = 1
Query: 457 ITVGMIRMLNLRGGEPAAVEVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWK--AQGTGFQLGGVLEGHVRGVTCL--CMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMAGPLSIEGEQG-------------------EYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQM 1155
+ +GMIR NL + E +S+ +P+AHT + L D AG LFSG +G IR W+ A F+ G L+GHVRGVT L +VG + AS + M + D VTAL + P+LL+G+ DG+I +++ P F+ LS A N+GH+ VR + GP F S D KM+ WQ+
Sbjct: 186 VPIGMIRGWNLESPQQPPYEFRVSESLPFAHTQSVMSLTVATDTAGNATLFSGSADGSIRYWQLDAATNEFKCCGSLDGHVRGVTRLKTFVVGAVPILASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLAPPFQQMFKETQDNPVTALCGTQDVAQTPILLVGTADGAITVKELPSFAYKTTLSGAA-NIGHQEAVRRISI----GPLNTFFSVGNDRKMLAWQI 436
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: A0A2D4CD19_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CD19_PYTIN) HSP 1 Score: 72.8 bits (177), Expect = 3.150e-10 Identity = 76/264 (28.79%), Postives = 104/264 (39.39%), Query Frame = 1
Query: 457 ITVGMIRMLNLRGGEPAAV-EVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWKAQGTG--FQLGGVLEGHVRGVTCL--CMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTC--------------------------MAGPLSIEGEQGEYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQM 1155
++VGMIR NL PA E SD +P+AH + LA D G LFSG +G IR W+ T F+ GVLEGHVRGVT L ++G AS MA P S ++ + D VTAL + + P+LL+G+ DG+I +++ P F+ N GH+ VR + + GP F S D KM+ WQ+
Sbjct: 88 VSVGMIRGWNLEN--PAQTFEFRASDAMPFAHPTHVMSLAVATDPRGGATLFSGSFDGSIRYWQLDPTTNEFKCRGVLEGHVRGVTRLKTFVLGTTTVLASAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMAPPFSPVFQETQ-------DSQVTALCGTQDAAQTPILLVGTADGAITVKELPTFAYKTTYQQGA-NFGHQDAVRRI----VTGPMNTFXSVGTDRKMIAWQI 337
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: A0A8K1FKC1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKC1_PYTOL) HSP 1 Score: 73.2 bits (178), Expect = 3.740e-10 Identity = 73/264 (27.65%), Postives = 103/264 (39.02%), Query Frame = 1
Query: 457 ITVGMIRMLNLRGGEPAAV-EVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWKAQGTG--FQLGGVLEGHVRGVTCL--CMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTC--------------------------MAGPLSIEGEQGEYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQM 1155
+ VGMIR NL PA E +S+++P+AH P+ LA D G LFSG +G IR W+ T F+ G L+GHVR VT L ++G AS MA P + + + D VTAL + P+LLIG+ DG+I +++ P F+ A N GH+ VR + GP+ F S D +M+ WQ+
Sbjct: 164 VPVGMIRGWNL--DNPAQTFEFHVSEQMPFAHGMPVQSLAVATDPTGNATLFSGSTDGTIRYWQLDATTNQFKCRGTLDGHVRSVTRLKTFVMGTAPILASXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMAPPF-------QQLFKETQDSPVTALCGTQDVTQAPILLIGTADGAITVKELPSFAYKTTFVARA-NFGHQDTVRRIAT----GPHNTFFSVGNDRRMLAWQV 413
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: F0VYK9_9STRA (Uncharacterized protein AlNc14C1G16 n=3 Tax=Albugo TaxID=65356 RepID=F0VYK9_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 4.890e-10 Identity = 71/258 (27.52%), Postives = 100/258 (38.76%), Query Frame = 1
Query: 457 ITVGMIRMLNLRGGEPAAVEVVISDKVPYAHTHPINCLAQLKDAAGALVLFSGGDEGLIRAWKAQGTG--FQLGGVLEGHVRGVTCL--CMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMAGPLSIEGE---------------------QGEYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQM 1155
++VGMIR NL + E ++ +AHT + LA D++G LFSG +G I+ WK F+ G LEGH RGVT L ++ M A Q + T S VTA+ + + S P+LLIGS DGSI +++ P F+ LS + N GH+ VR + I GP+ S D KM+ WQ+
Sbjct: 159 LSVGMIRAWNLEMPQMPPFEFYTNESSKHAHTMNVLSLAVATDSSGGATLFSGSADGSIKYWKLDPVANVFRCSGTLEGHTRGVTRLKTTLISTMPVLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSPPFQQVFKETQSCQ--VTAICGAQDAISQPILLIGSTDGSITIKELPTFAYKTTLSTSA-NYGHQDAVRRI----ISGPHNTLFSVGNDRKMIAWQI 409
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: A0A5J6N902_CYMEN (Zinc finger CCCH domain-containing protein 17-like isoform X5 n=1 Tax=Cymbidium ensifolium TaxID=78740 RepID=A0A5J6N902_CYMEN) HSP 1 Score: 72.4 bits (176), Expect = 6.830e-10 Identity = 56/208 (26.92%), Postives = 90/208 (43.27%), Query Frame = 1
Query: 586 AAGALVLFSGGDEGLIRAWK--AQGTGFQLGGVLEGHVRGVTCLCMVGNMLWSASKDHTVRVWDTATMACLGIIGSTGGLGHKGAVTCMAGP-----------LSIEGEQGEYMVTGSADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQMALKPP 1170
A G +LF+G +G I AWK A G F+ L GH+ V L + L+SAS DHT+RVWD T+ C+ I+ + ++ + E T + +K V AL + + P+L +D ++ L D P FS + + + +RA+ GP F +G E G++ +W+ + P
Sbjct: 229 AVGNEMLFAGIQDGRILAWKFIAVGNRFEPAASLSGHLLAVVSLVVGAMRLYSASMDHTIRVWDICTLQCIQILTDHTSVXXXXXXXXXXXXXXXXXXXXXXXVATDSGNLEVTYTHNEEKGVVALCGMHDAQNKPVLFSSCNDNTVRLYDLPSFSERGRIYS-------KQDIRAIQA----GPGGLFFTGDETGEIKVWKWLNEVP 425
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Match: A0A8B8JTB6_ABRPR (zinc finger CCCH domain-containing protein 17-like n=4 Tax=Abrus precatorius TaxID=3816 RepID=A0A8B8JTB6_ABRPR) HSP 1 Score: 67.8 bits (164), Expect = 2.110e-8 Identity = 53/205 (25.85%), Postives = 91/205 (44.39%), Query Frame = 1
Query: 604 LFSGGDEGLIRAWKAQG-----TGFQLGGVLEGHVRGVTCLCMVGNMLWSASKDHTVRVWDTATMAC-------LGIIGSTGGLGH---KGAVTCMAGPLSIEGEQGEYMVTGS--ADKSVTALTCFKTSPSGPLLLIGSDDGSIALRDFPGFSLAFELSAAVLNVGHRTPVRALLPLEIPGPNLYFMSGAEDGKMMMWQMALKP 1167
LF+ + G+I AW+ T F+L L GH + V CL + G ML+S SKD +++VWD T+ C + ++ S H + C + + E+G VT + + V +L + P+L + D S+ + + P FS + A + VR++ + GP F +G G + +W+ +P
Sbjct: 239 LFAAAENGIISAWRGSSSSEATTPFELVASLTGHTKAVVCLAVGGKMLFSGSKDQSMKVWDLDTLQCKMTLNEHIDVVTSLICWDHYLLSSSSDCTI-KIWVATEEGTLKVTYTHREENDVVSLFGMTNAEEKPILFVSCIDNSVRMYELPSFSERGRIFA-------KREVRSM----VLGPGGLFFTGDGTGLLKVWKWLEEP 431 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351466 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_13505 ID=mRNA_13505|Name=jgi.p|Trimin1|351466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1632bp|location=Sequence derived from alignment at Contig_91:361473..369691- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTGATCACTGCCGGTGCAGCGCTGCTGCTGCTGCTGCTGCTGCTGCTback to top protein sequence of jgi.p|Trimin1|351466 >Trimin1|351466|estExt_Genemark1.C_Ctg_910023 ID=Trimin1|351466|estExt_Genemark1.C_Ctg_910023|Name=jgi.p|Trimin1|351466|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=393bp MLITAGAALLLLLLLLLLPLLLLPSPLLLLLAVLLLLLLLLLLLLLLAVLback to top mRNA from alignment at Contig_91:361473..369691- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_13505 ID=mRNA_13505|Name=jgi.p|Trimin1|351466|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=8219bp|location=Sequence derived from alignment at Contig_91:361473..369691- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_91:361473..369691- >mRNA_13505 ID=mRNA_13505|Name=jgi.p|Trimin1|351466|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1179bp|location=Sequence derived from alignment at Contig_91:361473..369691- (Tribonema minus UTEX_B_3156 )back to top |