mRNA_13503 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351464
Unique Name	mRNA_13503
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

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BLAST of jgi.p|Trimin1|351464 vs. uniprot
Match: A0A835YKU3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKU3_9STRA)

HSP 1 Score: 668 bits (1724), Expect = 4.330e-238
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 2

Query:  257 MSTPQLEVSPVDVGDLSPKRHASSDSRSSIVNTSPTSPRPEGTPVQIGSLTLSAAVSTIYALNEERKAALAAAARWQRRSSELEAQARKLKAQLAAQEHSSSPGSMNRARIATLLQASEMVDDIATVGYGAGSDAHSRCSPLESRAACAQPSTAVKSEPSTPTAAAKAESGTPASSPTPAEGSTPVKSELLTQLTSAHGVSGMAAAGIRCSRRQXXXXXXXXXXXXXXPASPLRPPVAPTALAPATPPLAEQCTHGKFVIVAGEGSGGDSEYWVGRVVRRQHGGAALAVRWYTPRAGDARGYGGALHAPRRLTAQAVEADAVLSVFDALAEGERLPEGVHAAAERWLAEACGGSXXXXXXXXXXXXXXXXXXXXXXXXXKGGWLRRSASPDSCAALPDEPCCTRAEAQLR 1486
            MSTPQLEVSPVDVGDLSPKRHASSDSRSSIVNTSPTSPRPEGTPVQIGSLTLSAAVSTIYALNEERKAALAAAARWQRRSSELEAQARKLKAQLAAQEHSSSPGSMNRARIATLLQASEMVDDIATVGYGAGSDAHSRCSPLESRAACAQPSTAVKSEPSTPTAAAKAESGTPASSPTPAEGSTPVKSELLTQLTSAHGVSGMAAAGIRCSRRQXXXXXXXXXXXXXXPASPLRPPVAPTALAPATPPLAEQCTHGKFVIVAGEGSGGDSEYWVGRVVRRQHGGAALAVRWYTPRAGDARGYGGALHAPRRLTAQAVEADAVLSVFDALAEGERLPEGVHAAAERWLAEACGGSXXXXXXXXXXXXXXXXXXXXXXXXXKGGWLRRSASPDSCAALPDEPCCTRAEAQLR
Sbjct:    1 MSTPQLEVSPVDVGDLSPKRHASSDSRSSIVNTSPTSPRPEGTPVQIGSLTLSAAVSTIYALNEERKAALAAAARWQRRSSELEAQARKLKAQLAAQEHSSSPGSMNRARIATLLQASEMVDDIATVGYGAGSDAHSRCSPLESRAACAQPSTAVKSEPSTPTAAAKAESGTPASSPTPAEGSTPVKSELLTQLTSAHGVSGMAAAGIRCSRRQXXXXXXXXXXXXXXPASPLRPPVAPTALAPATPPLAEQCTHGKFVIVAGEGSGGDSEYWVGRVVRRQHGGAALAVRWYTPRAGDARGYGGALHAPRRLTAQAVEADAVLSVFDALAEGERLPEGVHAAAERWLAEACGGSXXXXXXXXXXXXXXXXXXXXXXXXXKGGWLRRSASPDSCAALPDEPCCTRAEAQLR 410

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351464 vs. uniprot

BLAST of jgi.p|Trimin1|351464 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YKU3_9STRA	4.330e-238	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_91	contig	Contig_91:352251..354197 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351464\|estExt_Genemark1.C_Ctg_910021
Hectar predicted targeting category	other localisation
TranscriptId	351786
Track	FilteredModels1
ProteinId	351464

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351464	gene_13503	Tribonema minus UTEX_B_3156	gene	Contig_91 352251..354197 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351464	Trimin1\|351464\|estExt_Genemark1.C_Ctg_910021	Tribonema minus UTEX_B_3156	polypeptide	Contig_91 352507..354084 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_13503_1	exon_13503_1	Tribonema minus UTEX_B_3156	exon	Contig_91 352251..352560 +
exon_13503_2	exon_13503_2	Tribonema minus UTEX_B_3156	exon	Contig_91 352645..352878 +
exon_13503_3	exon_13503_3	Tribonema minus UTEX_B_3156	exon	Contig_91 353140..354197 +

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR5_13503	UTR5_13503	Tribonema minus UTEX_B_3156	five_prime_UTR	Contig_91 352251..352506 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_13503	CDS_13503	Tribonema minus UTEX_B_3156	CDS	Contig_91 352507..352560 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_13503	UTR3_13503	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_91 354085..354197 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_91:352251..354197+
coding sequence from alignment at Contig_91:352251..354197+

spliced messenger RNA

>mRNA_13503 ID=mRNA_13503|Name=jgi.p|Trimin1|351464|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1602bp|location=Sequence derived from alignment at Contig_91:352251..354197+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
AAACTTTCGAACTGACTCAAACCATCAAAATCACGCGGGAGCTGGGAGAG
CGGGCAATTTCAGCAATCACACTCGTGCAGTCAGACGTCCTGCTTGGCTG
GCAAGAAACGTGGAGTCGCTGCAGCATCACTCCGGCCACGTAGAGGCGAT
AATTGAACCCGTTGCCGTTTCTCCGCGGCTGTAGCAGCATCAGTACACTT
GCTGGCAGCAGCGACACCAGCAAAGTTCCAAGTGCTGCGCTTATTCCGCA
TCGGCAATGAGCACGCCTCAGCTCGAGGTCTCTCCGGTGGATGTTGGCGA
CCTATCACCGAAGCGCCATGCCAGCAGCGATTCGCGCAGCAGCATCGTCA
ATACGTCACCGACATCGCCGCGGCCGGAGGGAACGCCAGTGCAAATTGGC
TCCCTGACGCTGTCGGCAGCGGTGTCCACGATCTATGCGCTGAACGAGGA
GAGGAAGGCTGCTCTTGCGGCTGCTGCGCGGTGGCAGCGGCGCTCAAGCG
AGTTAGAAGCCCAGGCACGCAAGTTGAAGGCTCAGTTGGCAGCGCAAGAG
CACAGCAGCAGCCCAGGCAGCATGAACCGCGCGCGCATCGCGACGCTGCT
GCAAGCCTCAGAGATGGTCGACGACATTGCGACTGTGGGCTACGGCGCAG
GTTCAGATGCGCACAGCCGATGCAGTCCCCTTGAGTCCAGGGCCGCGTGT
GCGCAGCCTTCAACTGCCGTCAAGAGCGAGCCATCTACACCAACGGCGGC
GGCAAAAGCTGAGAGCGGAACTCCGGCATCGTCGCCCACTCCAGCTGAGG
GCTCCACCCCTGTCAAGAGCGAGCTGCTCACGCAGTTAACATCAGCGCAC
GGCGTGTCCGGCATGGCAGCCGCAGGCATCAGGTGCAGCAGGAGACAGCG
GCAGCGGCGGAAGCGGTCGGAGAGCCCTGCCCCCGCGCCCCCGGCGTCGC
CATTACGGCCGCCGGTGGCTCCAACAGCACTGGCGCCCGCGACGCCCCCC
CTTGCTGAGCAGTGCACGCACGGCAAATTCGTCATTGTCGCCGGCGAGGG
CAGCGGCGGGGACAGCGAGTACTGGGTTGGGCGCGTGGTGCGGCGGCAGC
ACGGCGGCGCGGCGCTGGCGGTGCGCTGGTACACGCCGCGCGCGGGCGAC
GCGCGCGGCTACGGCGGCGCGCTGCACGCACCGCGGCGGCTAACGGCGCA
GGCGGTGGAGGCGGACGCCGTCCTCTCGGTGTTTGACGCGCTGGCGGAGG
GGGAGCGGCTGCCGGAGGGCGTGCACGCGGCGGCGGAGCGCTGGCTTGCT
GAGGCGTGTGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGG
GGGCAGCGGCGGCGCCAGCGGCGGCGGCGGCGGGGGGGATGGCAAGGGGG
GGTGGCTGCGGCGCAGCGCGTCGCCAGACAGCTGCGCGGCGCTGCCGGAT
GAGCCGTGCTGCACGCGCGCAGAGGCGCAGCTACGGTGAGCGGTAGAAGT
GGGCGGGTGTTTGATTGTGAGCGGATGTGCGCGTTTTACGGGTGTGTGTA
CAGGCAGGGGCAGGCCGCAGTCGTGGAGAATAAATGATAATTGTTGAAGT
GC

protein sequence of jgi.p|Trimin1|351464

>Trimin1|351464|estExt_Genemark1.C_Ctg_910021 ID=Trimin1|351464|estExt_Genemark1.C_Ctg_910021|Name=jgi.p|Trimin1|351464|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=411bp
MSTPQLEVSPVDVGDLSPKRHASSDSRSSIVNTSPTSPRPEGTPVQIGSL
TLSAAVSTIYALNEERKAALAAAARWQRRSSELEAQARKLKAQLAAQEHS
SSPGSMNRARIATLLQASEMVDDIATVGYGAGSDAHSRCSPLESRAACAQ
PSTAVKSEPSTPTAAAKAESGTPASSPTPAEGSTPVKSELLTQLTSAHGV
SGMAAAGIRCSRRQRQRRKRSESPAPAPPASPLRPPVAPTALAPATPPLA
EQCTHGKFVIVAGEGSGGDSEYWVGRVVRRQHGGAALAVRWYTPRAGDAR
GYGGALHAPRRLTAQAVEADAVLSVFDALAEGERLPEGVHAAAERWLAEA
CGGSGGGGGGGGGSGGSGGASGGGGGGDGKGGWLRRSASPDSCAALPDEP
CCTRAEAQLR*

mRNA from alignment at Contig_91:352251..354197+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_13503 ID=mRNA_13503|Name=jgi.p|Trimin1|351464|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1947bp|location=Sequence derived from alignment at Contig_91:352251..354197+ (Tribonema minus UTEX_B_3156 )
AAACTTTCGAACTGACTCAAACCATCAAAATCACGCGGGAGCTGGGAGAG
CGGGCAATTTCAGCAATCACACTCGTGCAGTCAGACGTCCTGCTTGGCTG
GCAAGAAACGTGGAGTCGCTGCAGCATCACTCCGGCCACGTAGAGGCGAT
AATTGAACCCGTTGCCGTTTCTCCGCGGCTGTAGCAGCATCAGTACACTT
GCTGGCAGCAGCGACACCAGCAAAGTTCCAAGTGCTGCGCTTATTCCGCA
TCGGCAATGAGCACGCCTCAGCTCGAGGTCTCTCCGGTGGATGTTGGCGA
CCTATCACCGGTATGCCCTTCTGACGATGAGCCGAAGTCACTGACTTTGC
CATGGCGAAAGAGGGCGGCATCTGCTGACGATCTTCCCCCTCAGAAGCGC
CATGCCAGCAGCGATTCGCGCAGCAGCATCGTCAATACGTCACCGACATC
GCCGCGGCCGGAGGGAACGCCAGTGCAAATTGGCTCCCTGACGCTGTCGG
CAGCGGTGTCCACGATCTATGCGCTGAACGAGGAGAGGAAGGCTGCTCTT
GCGGCTGCTGCGCGGTGGCAGCGGCGCTCAAGCGAGTTAGAAGCCCAGGC
ACGCAAGTTGAAGGCTCAGTTGGCAGCGGTACGAGAGGAGCACGCCGCCG
ATCGCAAGAAAGCCACTGCTCTCGCGACTCAAGTGCTGAAACTGACGGCG
CGCTGGATGGACCGAAGCCCTAGATCATCAGTAAACGATGCACCTGAGGA
TGAGGGCGCACACAGCAGCAGCAGCGACAGCAGCACCGATCACTCTGCAG
ATCAGACCACAAACATCTATGTGGCTTCACCATCGCCAGCTCCGGCCGCA
AACCTCAGTACGGCGTCACCACCTCCGTCTCCGCGCCAGCAAGAGCACAG
CAGCAGCCCAGGCAGCATGAACCGCGCGCGCATCGCGACGCTGCTGCAAG
CCTCAGAGATGGTCGACGACATTGCGACTGTGGGCTACGGCGCAGGTTCA
GATGCGCACAGCCGATGCAGTCCCCTTGAGTCCAGGGCCGCGTGTGCGCA
GCCTTCAACTGCCGTCAAGAGCGAGCCATCTACACCAACGGCGGCGGCAA
AAGCTGAGAGCGGAACTCCGGCATCGTCGCCCACTCCAGCTGAGGGCTCC
ACCCCTGTCAAGAGCGAGCTGCTCACGCAGTTAACATCAGCGCACGGCGT
GTCCGGCATGGCAGCCGCAGGCATCAGGTGCAGCAGGAGACAGCGGCAGC
GGCGGAAGCGGTCGGAGAGCCCTGCCCCCGCGCCCCCGGCGTCGCCATTA
CGGCCGCCGGTGGCTCCAACAGCACTGGCGCCCGCGACGCCCCCCCTTGC
TGAGCAGTGCACGCACGGCAAATTCGTCATTGTCGCCGGCGAGGGCAGCG
GCGGGGACAGCGAGTACTGGGTTGGGCGCGTGGTGCGGCGGCAGCACGGC
GGCGCGGCGCTGGCGGTGCGCTGGTACACGCCGCGCGCGGGCGACGCGCG
CGGCTACGGCGGCGCGCTGCACGCACCGCGGCGGCTAACGGCGCAGGCGG
TGGAGGCGGACGCCGTCCTCTCGGTGTTTGACGCGCTGGCGGAGGGGGAG
CGGCTGCCGGAGGGCGTGCACGCGGCGGCGGAGCGCTGGCTTGCTGAGGC
GTGTGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGGGGCA
GCGGCGGCGCCAGCGGCGGCGGCGGCGGGGGGGATGGCAAGGGGGGGTGG
CTGCGGCGCAGCGCGTCGCCAGACAGCTGCGCGGCGCTGCCGGATGAGCC
GTGCTGCACGCGCGCAGAGGCGCAGCTACGGTGAGCGGTAGAAGTGGGCG
GGTGTTTGATTGTGAGCGGATGTGCGCGTTTTACGGGTGTGTGTACAGGC
AGGGGCAGGCCGCAGTCGTGGAGAATAAATGATAATTGTTGAAGTGC

Coding sequence (CDS) from alignment at Contig_91:352251..354197+

>mRNA_13503 ID=mRNA_13503|Name=jgi.p|Trimin1|351464|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1233bp|location=Sequence derived from alignment at Contig_91:352251..354197+ (Tribonema minus UTEX_B_3156 )
ATGAGCACGCCTCAGCTCGAGGTCTCTCCGGTGGATGTTGGCGACCTATC
ACCGAAGCGCCATGCCAGCAGCGATTCGCGCAGCAGCATCGTCAATACGT
CACCGACATCGCCGCGGCCGGAGGGAACGCCAGTGCAAATTGGCTCCCTG
ACGCTGTCGGCAGCGGTGTCCACGATCTATGCGCTGAACGAGGAGAGGAA
GGCTGCTCTTGCGGCTGCTGCGCGGTGGCAGCGGCGCTCAAGCGAGTTAG
AAGCCCAGGCACGCAAGTTGAAGGCTCAGTTGGCAGCGCAAGAGCACAGC
AGCAGCCCAGGCAGCATGAACCGCGCGCGCATCGCGACGCTGCTGCAAGC
CTCAGAGATGGTCGACGACATTGCGACTGTGGGCTACGGCGCAGGTTCAG
ATGCGCACAGCCGATGCAGTCCCCTTGAGTCCAGGGCCGCGTGTGCGCAG
CCTTCAACTGCCGTCAAGAGCGAGCCATCTACACCAACGGCGGCGGCAAA
AGCTGAGAGCGGAACTCCGGCATCGTCGCCCACTCCAGCTGAGGGCTCCA
CCCCTGTCAAGAGCGAGCTGCTCACGCAGTTAACATCAGCGCACGGCGTG
TCCGGCATGGCAGCCGCAGGCATCAGGTGCAGCAGGAGACAGCGGCAGCG
GCGGAAGCGGTCGGAGAGCCCTGCCCCCGCGCCCCCGGCGTCGCCATTAC
GGCCGCCGGTGGCTCCAACAGCACTGGCGCCCGCGACGCCCCCCCTTGCT
GAGCAGTGCACGCACGGCAAATTCGTCATTGTCGCCGGCGAGGGCAGCGG
CGGGGACAGCGAGTACTGGGTTGGGCGCGTGGTGCGGCGGCAGCACGGCG
GCGCGGCGCTGGCGGTGCGCTGGTACACGCCGCGCGCGGGCGACGCGCGC
GGCTACGGCGGCGCGCTGCACGCACCGCGGCGGCTAACGGCGCAGGCGGT
GGAGGCGGACGCCGTCCTCTCGGTGTTTGACGCGCTGGCGGAGGGGGAGC
GGCTGCCGGAGGGCGTGCACGCGGCGGCGGAGCGCTGGCTTGCTGAGGCG
TGTGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCAGCGGGGGCAG
CGGCGGCGCCAGCGGCGGCGGCGGCGGGGGGGATGGCAAGGGGGGGTGGC
TGCGGCGCAGCGCGTCGCCAGACAGCTGCGCGGCGCTGCCGGATGAGCCG
TGCTGCACGCGCGCAGAGGCGCAGCTACGGTGA