Trimin1|351464|estExt_Genemark1.C_Ctg_910021 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	jgi.p\|Trimin1\|351464
Unique Name	Trimin1\|351464\|estExt_Genemark1.C_Ctg_910021
Type	polypeptide
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length	411

Homology

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BLAST of jgi.p|Trimin1|351464 vs. uniprot
Match: A0A835YKU3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKU3_9STRA)

HSP 1 Score: 669 bits (1727), Expect = 1.360e-240
Identity = 410/410 (100.00%), Postives = 410/410 (100.00%), Query Frame = 0

Query:    1 MSTPQLEVSPVDVGDLSPKRHASSDSRSSIVNTSPTSPRPEGTPVQIGSLTLSAAVSTIYALNEERKAALAAAARWQRRSSELEAQARKLKAQLAAQEHSSSPGSMNRARIATLLQASEMVDDIATVGYGAGSDAHSRCSPLESRAACAQPSTAVKSEPSTPTAAAKAESGTPASSPTPAEGSTPVKSELLTQLTSAHGVSGMAAAGIRCSRRQXXXXXXXXXXXXXXPASPLRPPVAPTALAPATPPLAEQCTHGKFVIVAGEGSGGDSEYWVGRVVRRQHGGAALAVRWYTPRAGDARGYGGALHAPRRLTAQAVEADAVLSVFDALAEGERLPEGVHAAAERWLAEACGGSXXXXXXXXXXXXXXXXXXXXXXXXXKGGWLRRSASPDSCAALPDEPCCTRAEAQLR 410
            MSTPQLEVSPVDVGDLSPKRHASSDSRSSIVNTSPTSPRPEGTPVQIGSLTLSAAVSTIYALNEERKAALAAAARWQRRSSELEAQARKLKAQLAAQEHSSSPGSMNRARIATLLQASEMVDDIATVGYGAGSDAHSRCSPLESRAACAQPSTAVKSEPSTPTAAAKAESGTPASSPTPAEGSTPVKSELLTQLTSAHGVSGMAAAGIRCSRRQXXXXXXXXXXXXXXPASPLRPPVAPTALAPATPPLAEQCTHGKFVIVAGEGSGGDSEYWVGRVVRRQHGGAALAVRWYTPRAGDARGYGGALHAPRRLTAQAVEADAVLSVFDALAEGERLPEGVHAAAERWLAEACGGSXXXXXXXXXXXXXXXXXXXXXXXXXKGGWLRRSASPDSCAALPDEPCCTRAEAQLR
Sbjct:    1 MSTPQLEVSPVDVGDLSPKRHASSDSRSSIVNTSPTSPRPEGTPVQIGSLTLSAAVSTIYALNEERKAALAAAARWQRRSSELEAQARKLKAQLAAQEHSSSPGSMNRARIATLLQASEMVDDIATVGYGAGSDAHSRCSPLESRAACAQPSTAVKSEPSTPTAAAKAESGTPASSPTPAEGSTPVKSELLTQLTSAHGVSGMAAAGIRCSRRQXXXXXXXXXXXXXXPASPLRPPVAPTALAPATPPLAEQCTHGKFVIVAGEGSGGDSEYWVGRVVRRQHGGAALAVRWYTPRAGDARGYGGALHAPRRLTAQAVEADAVLSVFDALAEGERLPEGVHAAAERWLAEACGGSXXXXXXXXXXXXXXXXXXXXXXXXXKGGWLRRSASPDSCAALPDEPCCTRAEAQLR 410

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351464 vs. uniprot

BLAST of jgi.p|Trimin1|351464 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
A0A835YKU3_9STRA	1.360e-240	100.00	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 66..100
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 225..243
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..199
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 359..391
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 23..46
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 150..249

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_91	contig	Contig_91:352507..354084 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351464	mRNA_13503	Tribonema minus UTEX_B_3156	mRNA	Contig_91 352251..354197 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>Trimin1|351464|estExt_Genemark1.C_Ctg_910021 ID=Trimin1|351464|estExt_Genemark1.C_Ctg_910021|Name=jgi.p|Trimin1|351464|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=411bp
MSTPQLEVSPVDVGDLSPKRHASSDSRSSIVNTSPTSPRPEGTPVQIGSL
TLSAAVSTIYALNEERKAALAAAARWQRRSSELEAQARKLKAQLAAQEHS
SSPGSMNRARIATLLQASEMVDDIATVGYGAGSDAHSRCSPLESRAACAQ
PSTAVKSEPSTPTAAAKAESGTPASSPTPAEGSTPVKSELLTQLTSAHGV
SGMAAAGIRCSRRQRQRRKRSESPAPAPPASPLRPPVAPTALAPATPPLA
EQCTHGKFVIVAGEGSGGDSEYWVGRVVRRQHGGAALAVRWYTPRAGDAR
GYGGALHAPRRLTAQAVEADAVLSVFDALAEGERLPEGVHAAAERWLAEA
CGGSGGGGGGGGGSGGSGGASGGGGGGDGKGGWLRRSASPDSCAALPDEP
CCTRAEAQLR*