mRNA_3530 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|96852
Unique NamemRNA_3530
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|96852 vs. uniprot
Match: A0A836C767_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C767_9STRA)

HSP 1 Score: 530 bits (1366), Expect = 2.620e-188
Identity = 284/284 (100.00%), Postives = 284/284 (100.00%), Query Frame = 2 
Query:   35 MTHAHRIPVGVRGMLLVACVYLVDAFQSRILSGSSSFLLRPPTTYAAPQCLKAGCSSRNAVFHHRARTRLRMASMSGDEDADVDELAERSSPPSSESGADAGASAEAAGGSNAPVDWDGAWAAKQKEMGNGDSGSDDSARAVEPXXXXXVSRPAFAGRKEIIVTGNKEEGYTYTEIDASGRVSRAGEADGGFRLDEDSPQLKDARRRIIEKEEQLVEAVAFDQVFVVGGALIAVLLAFMINVGMTGGISDGASRFRDVELPVNGVPPAVPHPSNQVYPDDDLVV 886
            MTHAHRIPVGVRGMLLVACVYLVDAFQSRILSGSSSFLLRPPTTYAAPQCLKAGCSSRNAVFHHRARTRLRMASMSGDEDADVDELAERSSPPSSESGADAGASAEAAGGSNAPVDWDGAWAAKQKEMGNGDSGSDDSARAVEPXXXXXVSRPAFAGRKEIIVTGNKEEGYTYTEIDASGRVSRAGEADGGFRLDEDSPQLKDARRRIIEKEEQLVEAVAFDQVFVVGGALIAVLLAFMINVGMTGGISDGASRFRDVELPVNGVPPAVPHPSNQVYPDDDLVV
Sbjct:    1 MTHAHRIPVGVRGMLLVACVYLVDAFQSRILSGSSSFLLRPPTTYAAPQCLKAGCSSRNAVFHHRARTRLRMASMSGDEDADVDELAERSSPPSSESGADAGASAEAAGGSNAPVDWDGAWAAKQKEMGNGDSGSDDSARAVEPXXXXXVSRPAFAGRKEIIVTGNKEEGYTYTEIDASGRVSRAGEADGGFRLDEDSPQLKDARRRIIEKEEQLVEAVAFDQVFVVGGALIAVLLAFMINVGMTGGISDGASRFRDVELPVNGVPPAVPHPSNQVYPDDDLVV 284
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BLAST of jgi.p|Trimin1|96852 vs. uniprot
Match: D8LAU9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LAU9_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.440e-11
Identity = 62/183 (33.88%), Postives = 92/183 (50.27%), Query Frame = 2 
Query:  341 ASAEAAGGSNAPVDWDGAWAAKQKEMGNGDSGSDDSARAVEPXXXXXVSRPAFAGRKEIIVTGNKEEGYTYTEIDASGRVSRAGEAD-GGFRLDEDSPQLKDARRRIIEKEEQLVEAVAFDQVFVVGGALIAVLLAFMINVGMTGGISDGASRFRDVELPVNGVPPAVPHPSNQVYPDDDLVV 886
            A+A   G     VDWD AWA+ ++ M       +   RA           PAF+GRK+++ T N++ GY + EI A G     G+   GGF    DS Q++D    I  KE++ V     +Q F    A++   L F + V M+GGI++G++RF+D+  P      A+P P+     D DLVV
Sbjct:  134 AAAAGEGAEEEQVDWDKAWASTRQRM-------EREKRAA----------PAFSGRKQVVATKNEDGGYDFEEISADGSSRMRGDKGRGGFGF-ADSNQVEDGPGGIRRKEQEAVNFATTNQAFAGLFAILLASLIFEVYVYMSGGITNGSTRFQDMGQPTTY--DALPLPATPPT-DSDLVV 295
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|96852 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836C767_9STRA2.620e-188100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
D8LAU9_ECTSI1.440e-1133.88Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_9contigContig_9:295525..298847 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|96852|CE96851_79
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-27_006320.1
TranscriptId97174
TrackFilteredModels1
ProteinId96852
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|96852gene_3530Tribonema minus UTEX_B_3156 geneContig_9 295525..298847 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|96852Trimin1|96852|CE96851_79Tribonema minus UTEX_B_3156 polypeptideContig_9 295754..298813 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_3530_3exon_3530_3Tribonema minus UTEX_B_3156 exonContig_9 295525..295823 -
exon_3530_2exon_3530_2Tribonema minus UTEX_B_3156 exonContig_9 296713..296828 -
exon_3530_1exon_3530_1Tribonema minus UTEX_B_3156 exonContig_9 298145..298847 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_3530UTR3_3530Tribonema minus UTEX_B_3156 three_prime_UTRContig_9 295525..295753 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_3530CDS_3530Tribonema minus UTEX_B_3156 CDSContig_9 298145..298813 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_3530UTR5_3530Tribonema minus UTEX_B_3156 five_prime_UTRContig_9 298814..298847 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_3530 ID=mRNA_3530|Name=jgi.p|Trimin1|96852|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1118bp|location=Sequence derived from alignment at Contig_9:295525..298847- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTGGCATCAAGGAGTGCGCTCCTTGCAGCAGGACATGACGCATGCTCACA
GAATACCAGTGGGCGTCCGTGGGATGCTCCTGGTGGCTTGCGTGTATCTT
GTGGATGCCTTTCAATCTAGGATCCTGTCAGGATCTTCATCGTTCTTACT
GAGGCCACCTACCACCTACGCAGCACCTCAGTGCCTAAAAGCCGGATGTA
GCAGCAGGAATGCTGTCTTTCATCATCGCGCAAGGACCCGGCTGCGAATG
GCGTCAATGAGTGGTGACGAAGACGCGGATGTCGATGAGCTTGCAGAGCG
ATCTTCTCCCCCCTCGAGTGAAAGCGGTGCCGACGCAGGTGCCTCAGCGG
AAGCAGCCGGCGGCAGTAATGCGCCGGTGGACTGGGACGGTGCGTGGGCT
GCCAAGCAAAAAGAGATGGGCAACGGCGACAGCGGCAGCGACGACAGCGC
CCGAGCAGTAGAACCGCCACCACCTCCGCCAGTTTCCAGGCCAGCCTTTG
CTGGGCGCAAGGAGATCATCGTGACTGGTAACAAAGAGGAGGGCTACACA
TACACGGAGATTGATGCCAGCGGGCGGGTCTCGCGAGCCGGGGAGGCAGA
TGGCGGTTTCAGACTGGACGAGGACTCCCCACAACTGAAGGATGCGAGGC
GGAGGATCATCGAGAAGGAGGAGCAGCTGGTGGAGGCTGTCGCTTTTGAT
CAGGTGTTTGTGGTGGGCGGGGCGCTGATAGCAGTGCTGCTGGCGTTCAT
GATCAACGTGGGGATGACGGGGGGCATCAGCGATGGCGCGTCACGCTTCA
GGGACGTGGAGCTCCCTGTGAACGGCGTGCCGCCAGCGGTACCCCACCCG
TCCAACCAAGTGTACCCCGATGATGATCTAGTGGTTTAGTTGCCAGCGGC
AGTGCACACTGTACATCCCATGTACGCAGGGTCACACGTTACTTAAGGTA
GAGGTTAGCCTGGCCATCACAGCATCACGCACCCCCTGGCATGACCGTAT
AATCGACAAGCCATATATATTTTGACACCATGAGCTTGCAGGCTTTTGCT
CGCAGGGCAGGTTCTTTCTATCAGCAGGTTTAAGTCATATGTACATAGAA
ACTCATCATCTGCCTGTA
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protein sequence of jgi.p|Trimin1|96852

>Trimin1|96852|CE96851_79 ID=Trimin1|96852|CE96851_79|Name=jgi.p|Trimin1|96852|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=285bp
MTHAHRIPVGVRGMLLVACVYLVDAFQSRILSGSSSFLLRPPTTYAAPQC
LKAGCSSRNAVFHHRARTRLRMASMSGDEDADVDELAERSSPPSSESGAD
AGASAEAAGGSNAPVDWDGAWAAKQKEMGNGDSGSDDSARAVEPPPPPPV
SRPAFAGRKEIIVTGNKEEGYTYTEIDASGRVSRAGEADGGFRLDEDSPQ
LKDARRRIIEKEEQLVEAVAFDQVFVVGGALIAVLLAFMINVGMTGGISD
GASRFRDVELPVNGVPPAVPHPSNQVYPDDDLVV*
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mRNA from alignment at Contig_9:295525..298847-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3530 ID=mRNA_3530|Name=jgi.p|Trimin1|96852|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3323bp|location=Sequence derived from alignment at Contig_9:295525..298847- (Tribonema minus UTEX_B_3156 )
TTGGCATCAAGGAGTGCGCTCCTTGCAGCAGGACATGACGCATGCTCACA
GAATACCAGTGGGCGTCCGTGGGATGCTCCTGGTGGCTTGCGTGTATCTT
GTGGATGCCTTTCAATCTAGGATCCTGTCAGGATCTTCATCGTTCTTACT
GAGGCCACCTACCACCTACGCAGCACCTCAGTGCCTAAAAGCCGGATGTA
GCAGCAGGAATGCTGTCTTTCATCATCGCGCAAGGACCCGGCTGCGAATG
GCGTCAATGAGTGGTGACGAAGACGCGGATGTCGATGAGCTTGCAGAGCG
ATCTTCTCCCCCCTCGAGTGAAAGCGGTGCCGACGCAGGTGCCTCAGCGG
AAGCAGCCGGCGGCAGTAATGCGCCGGTGGACTGGGACGGTGCGTGGGCT
GCCAAGCAAAAAGAGATGGGCAACGGCGACAGCGGCAGCGACGACAGCGC
CCGAGCAGTAGAACCGCCACCACCTCCGCCAGTTTCCAGGCCAGCCTTTG
CTGGGCGCAAGGAGATCATCGTGACTGGTAACAAAGAGGAGGGCTACACA
TACACGGAGATTGATGCCAGCGGGCGGGTCTCGCGAGCCGGGGAGGCAGA
TGGCGGTTTCAGACTGGACGAGGACTCCCCACAACTGAAGGATGCGAGGC
GGAGGATCATCGAGAAGGAGGAGCAGCTGGTGGAGGCTGTCGCTTTTGAT
CAGGCAAGCGGCACGCGCGTACATTTTCATGTGGCACTATTATCGTACTT
CGACTGTGAAGAGAAAGGCCCGATTGAAAGGCAGCAGTAGCAGCTCATGG
TGTCAACCATCCACGCGGTGCTGTTGTAGTGCTGGTACATGATTTACAGG
TGCTGAATGCAAAATGACAGGATACGCACGGTAGATTTGTCAGCATTCAC
AGCCTTGCATGAACCACTTGAATCAGAACTGAGCCTGCAGTGGACCCAAG
GCTCTGTGTGACAGCATCACATCAATGGTTTTGTGTGGACCACACTGTGC
GTCTAGCATGTAGTGGTGCAAGGCTGTGATCGTGGACGTCCTCACATGCA
ACAGGTATGAATTTGGCAAAGTATTGACGCTTTATATGTATATGCGCTGC
TTGTTGAAAGCAGTTGCACCAACAGCAGCACCACGCTTCTGCTGGACCTG
CAAGCCAATGTGGTTGACAATTGCATCAGCCAGCTGCTTGCGGCCAGGGT
TGACACTTACGGCCTACGCCGTATGAGCCGTTTATATTGTATGAGCGTAC
TTATGAATCCCGCCAGGACGAATATACGGACCGGTGCCGGCAAGCAGTAC
CCCGCAAGGCAGCGCAGCTGGGATACAGAGCACAGATGGTGGTACAATGC
CTGCATTGAGGAATCATATACAACATGAAGCGCGCAGCTCGTGCTCGACA
AGCAAAACCATGCTCGGCAACCGCACACAGCCCTCACGCACCACGGCAAA
AATAAAGAGGAAGTTCAACATGAATGTGAACTTCAAGTTGAAGTTTGCAG
CAACCGTGTTGCGTATGGCTTCGCGGGCGGTATACGTATATACCGTATGT
ATGACAGAGAATCGACCGTATTTGTCAACCCTGCTTGCGGCAGCTTGCTT
TGTAGGGGGCAGATTTTTGTACAATACATGTCATGCAATCTACGCAGCCT
CTACAGTCTGTGGCGCTGGGCCATCTGGGTGCTTGCGGGCTCCGTCATCA
AGTTCCCCATTGGTGCCTTATGATCCTATGACTACATGCCTTACGTGAGC
TAAAACTATGTAGAACTCAGCCTGGTCTCGACGTGTTAGATTTGTACGTG
CACATTGCAACAGGCACGCCAGCTTCACCCTCTATTCATCACGTACACCT
GCTCAAGGAGCATGCTGCTTGCGCCCAAGCGACCTTGACCATGCACACGT
CTTGGCGCAATGCGGGTGGCCTGCAGGCGCCGAATTCAGACCCAGGGCAC
TGACTGGTAGCAGTGTACGTGGATCTGACTGGCAGCTTCACCTTCCCTCG
CTGTGATGCGCGTGCGCAGGTGTTTGTGGTGGGCGGGGCGCTGATAGCAG
TGCTGCTGGCGTTCATGATCAACGTGGGGATGACGGGGGGCATCAGCGAT
GGCGCGTCACGCTTCAGGGACGTGGAGCTCCCTGTGTGAGTGGCGCAACA
TGTTACAATACTGCTAGCACTTTGTTTTTGTTACAGGACTATGTAAGTGG
AATGGTACCCAAAGTGCCAAACTGTAATTATGACATCTTGACCCCAGCCT
TCTCAAGATGCTACTTCAAGAATAGGCATGCTTGACATGTTGAAGTTGTA
ACTCGGGGCCGACTCAAGTTCGATCCACATATGGATGGCAGTGACAGTGC
ACTGCTACTGCCATGTCATTTCCTGTTCTTGCAGCACGAGGCGTCCTCTC
CTTTGAATTTACAACAGAGTATGTGTATGGGCGTGCTTTTGCTAGGATGA
GTAGTGCTGCATGTTGTTGACGGCTAAGCAATTTCCGTTGCATCAGCTCA
TTGTCAGCATGTCAACAGCATCACGCAGAAACACGGTCAAGGGTCACACA
CACCTCAAGGTTTGTGTTCGTGCAAATTGCACTTCAAGGCATGTCGGGCG
TCGTCAGGTGATGTACACTGCGCTGCGCGCAGGCACCTTCTTCTGTTTCC
CGTGCCACTGTGTGGCTGGCTGATTGACCCGAATGCATCACATACATGAT
ATGCCATGCCTGTGCGCGCGCAAAGTGTACTCACAACGGGGCTGTCATTG
TGTCTGCAGCATGTAACGGGCATAGCATGGGCATGCTGGCCAATACCTGT
TGCCCACCTTCATGGTCCTGCCAAACTTCCGCAAGGGATACAACGAGCTT
GCGCTGACACATGGCCATATGCTTGCAATGTCAGGGTACTGGCAGGTGTC
GTCTTGTACTCACAGGCCTCATGTACATGCATGGACTGCGCTGACATAAC
GATCAGCAGCCACTGACGTGCCCTCGTTGATGCTTGTACGCTGCTACTGC
TGCCGCTGCTGCTGCCGACTGCAGGAACGGCGTGCCGCCAGCGGTACCCC
ACCCGTCCAACCAAGTGTACCCCGATGATGATCTAGTGGTTTAGTTGCCA
GCGGCAGTGCACACTGTACATCCCATGTACGCAGGGTCACACGTTACTTA
AGGTAGAGGTTAGCCTGGCCATCACAGCATCACGCACCCCCTGGCATGAC
CGTATAATCGACAAGCCATATATATTTTGACACCATGAGCTTGCAGGCTT
TTGCTCGCAGGGCAGGTTCTTTCTATCAGCAGGTTTAAGTCATATGTACA
TAGAAACTCATCATCTGCCTGTA
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Coding sequence (CDS) from alignment at Contig_9:295525..298847-

>mRNA_3530 ID=mRNA_3530|Name=jgi.p|Trimin1|96852|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=855bp|location=Sequence derived from alignment at Contig_9:295525..298847- (Tribonema minus UTEX_B_3156 )
ATGACGCATGCTCACAGAATACCAGTGGGCGTCCGTGGGATGCTCCTGGT
GGCTTGCGTGTATCTTGTGGATGCCTTTCAATCTAGGATCCTGTCAGGAT
CTTCATCGTTCTTACTGAGGCCACCTACCACCTACGCAGCACCTCAGTGC
CTAAAAGCCGGATGTAGCAGCAGGAATGCTGTCTTTCATCATCGCGCAAG
GACCCGGCTGCGAATGGCGTCAATGAGTGGTGACGAAGACGCGGATGTCG
ATGAGCTTGCAGAGCGATCTTCTCCCCCCTCGAGTGAAAGCGGTGCCGAC
GCAGGTGCCTCAGCGGAAGCAGCCGGCGGCAGTAATGCGCCGGTGGACTG
GGACGGTGCGTGGGCTGCCAAGCAAAAAGAGATGGGCAACGGCGACAGCG
GCAGCGACGACAGCGCCCGAGCAGTAGAACCGCCACCACCTCCGCCAGTT
TCCAGGCCAGCCTTTGCTGGGCGCAAGGAGATCATCGTGACTGGTAACAA
AGAGGAGGGCTACACATACACGGAGATTGATGCCAGCGGGCGGGTCTCGC
GAGCCGGGGAGGCAGATGGCGGTTTCAGACTGGACGAGGACTCCCCACAA
CTGAAGGATGCGAGGCGGAGGATCATCGAGAAGGAGGAGCAGCTGGTGGA
GGCTGTCGCTTTTGATCAGGTGTTTGTGGTGGGCGGGGCGCTGATAGCAG
TGCTGCTGGCGTTCATGATCAACGTGGGGATGACGGGGGGCATCAGCGAT
GGCGCGTCACGCTTCAGGGACGTGGAGCTCCCTGTGAACGGCGTGCCGCC
AGCGGTACCCCACCCGTCCAACCAAGTGTACCCCGATGATGATCTAGTGG
TTTAG
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