mRNA_14760 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351322
Unique NamemRNA_14760
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: A0A835YK10_9STRA (Uncharacterized protein ycf23 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK10_9STRA)

HSP 1 Score: 505 bits (1301), Expect = 2.880e-179
Identity = 278/278 (100.00%), Postives = 278/278 (100.00%), Query Frame = 2 
Query:   26 MALKVTAAAVVASLCGVEGFMTMSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLPAPATMPVEQKASTMA 859
            MALKVTAAAVVASLCGVEGFMTMSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLPAPATMPVEQKASTMA
Sbjct:    1 MALKVTAAAVVASLCGVEGFMTMSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLPAPATMPVEQKASTMA 278
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: D7FIP5_ECTSI (Uncharacterized protein ycf23 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP5_ECTSI)

HSP 1 Score: 311 bits (798), Expect = 9.580e-103
Identity = 165/246 (67.07%), Postives = 204/246 (82.93%), Query Frame = 2 
Query:   92 MSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDLPAPATM 829
            MSGD +APF+A KALK+ISG+  FD++LV KVA AA AGG TH+DIA DP+LV+ AK  + +V +CVSA++PEL   CV+AGA+MVELGNFD FYDQG+ F+A+DV+ MT+ TRALLP TPLSVT+PH L +D QV LA  L+ LGVDVIQTEGK+SLDPS GG+QG IERAAP LAA +AI++AV IPVM +SG+S+VTA MALAAGA GVGVGSAVNKLN+++ M+AVVRA+A AM LP P+ +
Sbjct:   26 MSGDVLAPFQAGKALKVISGLNKFDADLVSKVARAAAAGGGTHIDIACDPDLVRAAKAVS-NVPVCVSAVDPELFPACVDAGAEMVELGNFDCFYDQGLTFSAEDVLEMTRKTRALLPTTPLSVTVPHTLDLDDQVDLAVELEGLGVDVIQTEGKFSLDPSKGGIQGAIERAAPTLAAAHAISKAVSIPVMAASGLSDVTAPMALAAGARGVGVGSAVNKLNSEIGMVAVVRAIASAMGLPKPSAV 270
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: A0A1Y1HWD8_KLENI (Uncharacterized protein ycf23 n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HWD8_KLENI)

HSP 1 Score: 254 bits (648), Expect = 1.350e-79
Identity = 138/237 (58.23%), Postives = 178/237 (75.11%), Query Frame = 2 
Query:  101 DAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMDL 811
            D + PF   KA K+I+G+ NF+ E V ++  AA+ GGATH+DIA DPELVKLA     SV +CVSA+EPEL VP V AGA MVE+GN+D FY +G  F A++V+ +T+ TR LLP  PLSVT+PH L +  QV LA+ L+  G D+IQTEG  S  P+  G+ G+IE+A+P LAA Y+I+RAV IPVM +SGIS+VTASMA+AAGA+GVGVGSA+NKLN+ +AMIA  RA+A A+ L
Sbjct:   67 DVLRPFAEKKAFKVIAGLKNFNRENVAEIVAAAEQGGATHVDIACDPELVKLACSLT-SVPVCVSAVEPELFVPAVAAGATMVEIGNYDPFYAEGRTFDAEEVLALTRRTRQLLPTIPLSVTVPHTLPLPDQVHLAELLENAGADIIQTEGGVSSAPTQAGVAGMIEKASPTLAAAYSISRAVSIPVMCASGISDVTASMAIAAGAAGVGVGSAINKLNSGIAMIAATRAIANALGL 302
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: A0A8J7JEE1_9CYAN (DUF561 domain-containing protein n=1 Tax=Lusitaniella coriacea LEGE 07157 TaxID=945747 RepID=A0A8J7JEE1_9CYAN)

HSP 1 Score: 249 bits (636), Expect = 1.100e-78
Identity = 140/240 (58.33%), Postives = 177/240 (73.75%), Query Frame = 2 
Query:   86 MTMSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAM 805
            MT++      F  H ALKIISG+ NFD + V     AA AGGAT +DIAADP+LV+LA+   P + IC SA+EPE LV  VEAGAD++E+GNFD FY QG  F A++V+ +T  TR LLP   LSVT+PH L +DQQV LAQAL E+G D+IQTEG  S  P+  G  G++E+AAP LAA Y+IARAV +PV+ +SG+S+VTA MA+AAGASGVGVGSA+N+LN +VAM+A VR L  A+
Sbjct:    1 MTINLQLQQAFAQHNALKIISGLNNFDRDRVAATVKAATAGGATFVDIAADPDLVRLARHLTP-LPICTSAVEPEKLVRAVEAGADLIEIGNFDSFYAQGRRFEANEVLELTGQTRELLPNIALSVTVPHILELDQQVELAQALVEVGADIIQTEGGTSSAPTHAGTLGLVEKAAPTLAAAYSIARAVSVPVLCASGLSDVTAPMAIAAGASGVGVGSAINQLNDEVAMVAAVRRLVEAL 239
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: K9UJB9_CHAP6 (Pyruvate/oxaloacetate carboxyltransferase n=4 Tax=Chamaesiphon TaxID=217161 RepID=K9UJB9_CHAP6)

HSP 1 Score: 248 bits (633), Expect = 3.010e-78
Identity = 136/240 (56.67%), Postives = 179/240 (74.58%), Query Frame = 2 
Query:   86 MTMSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAM 805
            M M       F +++ LK+ISG+ NFD + V  V  AA  GGAT +DIAADPELV++A++   ++ ICVSA+EPEL V  VEAGAD++E+GNFD FY QG+ F AD+V+ +TKATRALLP   LSVT+PH L +D+QV LAQAL   G D+IQTEG     PS  G  G+IE+AAP LAA Y I+RAV++PV+ +SG+S VTA +A++AGA+G+GVGSA+NKLN ++A IAVVR+L  A+
Sbjct:    1 MNMLNSLQTAFASNRVLKVISGLNNFDRDRVAMVVRAADLGGATFIDIAADPELVRMARQLT-NLPICVSAVEPELFVAAVEAGADLIEIGNFDSFYAQGIRFEADEVLALTKATRALLPHITLSVTVPHILTLDKQVELAQALVAAGADIIQTEGGTGSTPSHAGTLGLIEKAAPTLAAAYEISRAVEVPVLCASGLSNVTAPLAISAGAAGIGVGSAINKLNDEIAAIAVVRSLVEAL 239
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: A0A2G7GCB4_9CHRO (Uncharacterized protein n=3 Tax=Chroococcales TaxID=1118 RepID=A0A2G7GCB4_9CHRO)

HSP 1 Score: 246 bits (627), Expect = 2.430e-77
Identity = 137/240 (57.08%), Postives = 178/240 (74.17%), Query Frame = 2 
Query:   86 MTMSGDAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAM 805
            MTM  +    F   + LKIISG+ NFDS+ V    +AA  GGAT +DIAAD ELVKLA R+  ++ +C+SA+EPE  V  VEAGAD++E+GNFD FY QG  F A +V+ +T+ATR+LLP+  LSVT+PH L +DQQV LA+ L E G D+IQTEG  S  P+  G  G+IE+AAP LAA Y I+RAV +PV+ +SGIS VTA +A+AAGA+GVGVGSA+N+LN++VAMIA VR+L  A+
Sbjct:    1 MTMHPEMQRAFEQRRVLKIISGLNNFDSQRVAATVIAADRGGATFVDIAADAELVKLA-RSLTNLPVCISAVEPEKFVVAVEAGADLIEIGNFDSFYAQGRRFEAAEVLELTQATRSLLPQITLSVTVPHILELDQQVQLAEELVEAGADIIQTEGGTSTQPAHPGTLGLIEKAAPTLAAAYEISRAVSVPVLCASGISSVTAPLAIAAGAAGVGVGSAINQLNSEVAMIAAVRSLVDAL 239
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: UPI001882BC92 (DUF561 domain-containing protein n=1 Tax=Cyanobacterium stanieri TaxID=102235 RepID=UPI001882BC92)

HSP 1 Score: 245 bits (625), Expect = 4.710e-77
Identity = 139/236 (58.90%), Postives = 181/236 (76.69%), Query Frame = 2 
Query:  101 DAIAPFRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMD 808
            DAIA     KALK+ISG+ NFD   V  V  AAQ GGAT +DIAAD E++K  K +   + +CVSA+EP+L V  VEAGAD++E+GNFD FY QG++F+A+DV+++T+ TRALLP   LSVT+PH L +D+QV LAQ L+  G D+IQTEG  S +P+  G+ G+IE+A+P LAA +AI+RAV IPV+ +SG+S+VT  MA+A GASGVGVGSAVNKLN QVAMIAVVR+L  A++
Sbjct:    8 DAIAH---KKALKVISGLNNFDVANVVAVCRAAQLGGATFVDIAADVEIIKAVKESI-DLPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLSLTRQTRALLPHVLLSVTVPHTLPLDEQVELAQKLEAEGADIIQTEGGTSSNPNHSGILGLIEKASPTLAAAHAISRAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDQVAMIAVVRSLVEALN 239
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: A0A1E5QXG4_9CHRO (Uncharacterized protein n=2 Tax=unclassified Cyanobacterium TaxID=2629879 RepID=A0A1E5QXG4_9CHRO)

HSP 1 Score: 244 bits (623), Expect = 9.440e-77
Identity = 132/227 (58.15%), Postives = 177/227 (77.97%), Query Frame = 2 
Query:  128 KALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMD 808
            KALK+ISG+ NFD   V+ V  AA+ GGAT +DIAAD E++K  K +  ++ +CVSA+EP+L V  VEAGAD++E+GNFD FY QG++F+A+DV+ +T+ TRALLP   LSVT+PH L + +QV LAQAL+  G D+IQTEG  S  P+  G+ G+IE+A+P LAA +AI++AV IPV+ +SG+S+VT  MA+A GASGVGVGSAVNKLN +VAM+AVVR+L  A+D
Sbjct:   14 KALKVISGLNNFDLANVKAVCKAAELGGATFVDIAADVEIIKAVKESI-NIPVCVSAVEPQLFVSAVEAGADLIEIGNFDSFYAQGINFSAEDVLNLTRQTRALLPNILLSVTVPHTLPLHEQVELAQALEAAGADIIQTEGGTSSKPNHSGILGLIEKASPTLAAAHAISKAVQIPVLCASGLSDVTVPMAIATGASGVGVGSAVNKLNDEVAMMAVVRSLVEALD 239
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: A0A0D6ACD4_9CHRO (IMP dehydrogenase/GMP reductase n=1 Tax=Geminocystis sp. NIES-3708 TaxID=1615909 RepID=A0A0D6ACD4_9CHRO)

HSP 1 Score: 244 bits (623), Expect = 9.750e-77
Identity = 134/226 (59.29%), Postives = 175/226 (77.43%), Query Frame = 2 
Query:  116 FRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRAL 793
            F   KALK+ISG+ NFD + V  V  AA+ GGAT +DIAAD  L+K  ++   ++ ICVSA++PELL   VEAGAD+VE+GNFD FY QG+ FTA+DV+ +T+ TRALLP   LSVT+PH L +D+QV LAQAL   G D+IQTEG  S +P+  G+ G+IE+A+P LA  +AI+RAV++PVM +SG+S+VTA MA++AGA G+GVGSAVNKLN Q+AMIAVVR+L
Sbjct:   11 FATKKALKVISGLNNFDVDNVVAVCKAAELGGATFVDIAADVNLIKTVRQLI-NLPICVSAVKPELLANAVEAGADLVEIGNFDSFYAQGITFTAEDVLRLTRETRALLPNITLSVTVPHTLPLDEQVELAQALVTQGADIIQTEGGTSSNPNHSGVLGLIEKASPTLATAHAISRAVEVPVMCASGLSDVTAPMAISAGADGIGVGSAVNKLNDQIAMIAVVRSL 235
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BLAST of jgi.p|Trimin1|351322 vs. uniprot
Match: K9Z1M6_CYAAP (Uncharacterized protein n=4 Tax=Cyanobacteria TaxID=1117 RepID=K9Z1M6_CYAAP)

HSP 1 Score: 244 bits (623), Expect = 9.750e-77
Identity = 133/231 (57.58%), Postives = 180/231 (77.92%), Query Frame = 2 
Query:  116 FRAHKALKIISGITNFDSELVRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPCVEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPHKLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAATYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMIAVVRALAIAMD 808
            F + KALK+ISG+ NFD E V  V  +A+ GGAT +DIAAD +L+K  ++   S+ ICVSA+  E+L   V+ GAD+VE+GNFD FY QG+ F+A+DV+ +T+ TR LLP+T LSVT+PH L +D+QV LAQAL   G D+IQTEG  S +P+  G+ G+IE+A+P LAA YA++RAV++PVM +SG+S+VTA MA+A+GASG+GVGSA+NKLN QVAMIAVVR+L  A++
Sbjct:   11 FASKKALKVISGLNNFDVENVTAVCKSAELGGATFVDIAADMDLIKTVRQLI-SLPICVSAVSAEILAQAVDNGADLVEIGNFDSFYAQGITFSAEDVLNLTRETRKLLPETTLSVTVPHILALDEQVELAQALVASGADIIQTEGGTSSNPNHSGILGLIEKASPTLAAAYALSRAVEVPVMCASGLSDVTAPMAIASGASGIGVGSAINKLNDQVAMIAVVRSLVEALN 240
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351322 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YK10_9STRA2.880e-179100.00Uncharacterized protein ycf23 n=1 Tax=Tribonema mi... [more]
D7FIP5_ECTSI9.580e-10367.07Uncharacterized protein ycf23 n=2 Tax=Ectocarpus T... [more]
A0A1Y1HWD8_KLENI1.350e-7958.23Uncharacterized protein ycf23 n=1 Tax=Klebsormidiu... [more]
A0A8J7JEE1_9CYAN1.100e-7858.33DUF561 domain-containing protein n=1 Tax=Lusitanie... [more]
K9UJB9_CHAP63.010e-7856.67Pyruvate/oxaloacetate carboxyltransferase n=4 Tax=... [more]
A0A2G7GCB4_9CHRO2.430e-7757.08Uncharacterized protein n=3 Tax=Chroococcales TaxI... [more]
UPI001882BC924.710e-7758.90DUF561 domain-containing protein n=1 Tax=Cyanobact... [more]
A0A1E5QXG4_9CHRO9.440e-7758.15Uncharacterized protein n=2 Tax=unclassified Cyano... [more]
A0A0D6ACD4_9CHRO9.750e-7759.29IMP dehydrogenase/GMP reductase n=1 Tax=Geminocyst... [more]
K9Z1M6_CYAAP9.750e-7757.58Uncharacterized protein n=4 Tax=Cyanobacteria TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_87contigContig_87:245733..251319 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351322|estExt_Genemark1.C_Ctg_870032
DescriptionProtein of unknown function (DUF561)
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGs28MV1@1|root,2QUDA@2759|Eukaryota
Evalue1.9e-104
Seed ortholog2880.D7FIP5
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionAldolase-type TIM barrel
Ec32 orthologEc-27_000540.1
TranscriptId351644
TrackFilteredModels1
ProteinId351322
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351322gene_14760Tribonema minus UTEX_B_3156 geneContig_87 245733..251319 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_14760_11exon_14760_11Tribonema minus UTEX_B_3156 exonContig_87 245733..245952 -
exon_14760_10exon_14760_10Tribonema minus UTEX_B_3156 exonContig_87 246190..246267 -
exon_14760_9exon_14760_9Tribonema minus UTEX_B_3156 exonContig_87 246716..246758 -
exon_14760_8exon_14760_8Tribonema minus UTEX_B_3156 exonContig_87 247259..247349 -
exon_14760_7exon_14760_7Tribonema minus UTEX_B_3156 exonContig_87 247853..247892 -
exon_14760_6exon_14760_6Tribonema minus UTEX_B_3156 exonContig_87 248329..248407 -
exon_14760_5exon_14760_5Tribonema minus UTEX_B_3156 exonContig_87 248668..248717 -
exon_14760_4exon_14760_4Tribonema minus UTEX_B_3156 exonContig_87 250266..250369 -
exon_14760_3exon_14760_3Tribonema minus UTEX_B_3156 exonContig_87 250689..250846 -
exon_14760_2exon_14760_2Tribonema minus UTEX_B_3156 exonContig_87 251062..251170 -
exon_14760_1exon_14760_1Tribonema minus UTEX_B_3156 exonContig_87 251309..251319 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_14760UTR3_14760Tribonema minus UTEX_B_3156 three_prime_UTRContig_87 245733..245853 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_14760CDS_14760Tribonema minus UTEX_B_3156 CDSContig_87 251062..251156 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_14760UTR5_14760Tribonema minus UTEX_B_3156 five_prime_UTRContig_87 251309..251319 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351322Trimin1|351322|estExt_Genemark1.C_Ctg_870032Tribonema minus UTEX_B_3156 polypeptideContig_87 245854..251156 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_14760 ID=mRNA_14760|Name=jgi.p|Trimin1|351322|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=983bp|location=Sequence derived from alignment at Contig_87:245733..251319- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TTACACCCCAGATAGCCAGGAAACCATGGCTCTCAAGGTGACTGCTGCGG
CCGTGGTGGCGTCGCTGTGCGGCGTGGAGGGATTCATGACCATGTCTGGC
GACGCCATCGCCCCCTTCAGGGCGCACAAGGCTCTCAAGATCATCAGCGG
CATCACCAACTTCGACAGCGAGCTGGTGCGCAAGGTGGCTGTGGCCGCAC
AGGCTGGCGGCGCCACACACCTTGACATTGCTGCTGATCCGGAGCTGGTG
AAGTTGGCCAAGAGGACTGCACCCTCAGTCAGCATCTGCGTGAGCGCCAT
TGAGCCTGAGCTGCTGGTGCCGTGCGTGGAGGCGGGGGCGGACATGGTGG
AGCTTGGAAACTTTGACATGTTCTACGACCAGGGCATGGACTTCACTGCT
GATGATGTCATCACCATGACCAAGGCCACCAGGGCCCTGCTGCCCAAGAC
GCCTCTGTCTGTGACCATTCCCCACAAGCTGCACATGGACCAGCAGGTCA
CTTTGGCACAGGCGCTGCAGGAGCTGGGTGTGGATGTTATCCAGACTGAG
GGCAAGTACTCATTGGACCCCTCTGCTGGCGGGCTCCAGGGCGTGATTGA
ACGGGCAGCCCCCGCCTTGGCTGCCACGTATGCTATCGCCAGGGCTGTGG
ACATCCCTGTCATGACTTCCTCCGGCATCAGTGAGGTGACAGCCAGCATG
GCCCTGGCTGCGGGGGCATCTGGGGTGGGCGTGGGCTCTGCCGTTAACAA
GCTCAACGCACAGGTGGCCATGATCGCCGTTGTACGCGCGCTTGCCATTG
CCATGGACCTGCCTGCGCCAGCGACCATGCCTGTGGAGCAGAAGGCTTCC
ACTATGGCATAGGAGAGACAAGTTCGTACGGGAGCGCAGCGCTGCTGCAC
TTTGAATCGCAGGTTTCGTTCAAGAGAAGACAGGGTGTTCGCTCAAGCCC
TGGATCTCTGCAATAGTCTACACGTGACAGTCA
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protein sequence of jgi.p|Trimin1|351322

>Trimin1|351322|estExt_Genemark1.C_Ctg_870032 ID=Trimin1|351322|estExt_Genemark1.C_Ctg_870032|Name=jgi.p|Trimin1|351322|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=279bp
MALKVTAAAVVASLCGVEGFMTMSGDAIAPFRAHKALKIISGITNFDSEL
VRKVAVAAQAGGATHLDIAADPELVKLAKRTAPSVSICVSAIEPELLVPC
VEAGADMVELGNFDMFYDQGMDFTADDVITMTKATRALLPKTPLSVTIPH
KLHMDQQVTLAQALQELGVDVIQTEGKYSLDPSAGGLQGVIERAAPALAA
TYAIARAVDIPVMTSSGISEVTASMALAAGASGVGVGSAVNKLNAQVAMI
AVVRALAIAMDLPAPATMPVEQKASTMA*
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mRNA from alignment at Contig_87:245733..251319-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_14760 ID=mRNA_14760|Name=jgi.p|Trimin1|351322|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=5587bp|location=Sequence derived from alignment at Contig_87:245733..251319- (Tribonema minus UTEX_B_3156 )
TTACACCCCAGGTACGGCCGCCTCCTGGTTGATGAAGCAGTGCTGTGTCT
GCGCTGCTGCCCTGCTGCAGTGCATGCAGCCGTTGAGCCTATACGACAGC
ATGTCCTGAAGCTTTGTGGATGTCATGTTTTCTGCTTGGATCTTATCAGA
TAGCCAGGAAACCATGGCTCTCAAGGTGACTGCTGCGGCCGTGGTGGCGT
CGCTGTGCGGCGTGGAGGGATTCATGACCATGTCTGGCGACGCCATCGCC
CCCTTCAGGTGCAATGGCCCTGAACCTTCAACATGGCTCGCCTTGCCTGC
CTCACGCTGCTCACGCACACGCTGCACTTGGCACTTGCCGCTTCAAGGTT
GGCAATGTCAGTCGAAGTAATGGCTTTGCGCCTCGCTTTGTGATTGTGTG
GTGGCATTAGGACACTCTTCTCAGTGATGTTGCACTGTGCGTTGTGCCGT
CGTCGATCGGTGGATCCACACAGGGCGCACAAGGCTCTCAAGATCATCAG
CGGCATCACCAACTTCGACAGCGAGCTGGTGCGCAAGGTGGCTGTGGCCG
CACAGGCTGGCGGCGCCACACACCTTGACATTGCTGCTGATCCGGAGCTG
GTGAAGTTGGCCAAGAGGACTGCACCCTCAGGTATCAACAATGCTTGTGG
TAACTGAGAAGAAGTAGAGAGGTGGCGCAATTCACAATGACCTACTTTGC
TGTTTAATGCACTTTTGATTGTGTAGTGATACATATACACACCTGCTACT
GTGAACGATGCCATGTGCTGCAAGTGCGTGGATCACACTGGGAGTCCCGT
TGTCATGTTGTCAGACACGCTGCTGCACTTGGCCTGATTCAGGGTGAAAT
TTCGTTGATTGGGGACCGCCGCAACAAGCTTGATGATGTTAATGCGTGCA
CAAACCCATCATCGCTTGCTGCTTTTCCATCTGACTCTCTACTGCCACAG
TCAGCATCTGCGTGAGCGCCATTGAGCCTGAGCTGCTGGTGCCGTGCGTG
GAGGCGGGGGCGGACATGGTGGAGCTTGGAAACTTTGACATGTTCTACGA
CCAGGTACAGTGCGCTTGCTGTTTCCTCAATGGACTACACCTTGAGTCCA
TGACTGTAACAATTGAAGCTTGCTTCAACAATATCTAGCTGTTGATGCAT
CGCGCGACATTATACAGACATCATGTCAATCACATAACAGAACGATTAGC
AAAAAATTATTTCAGAATTATCATTCGTCATGTGATAGCAAATAAGCAGA
AATAAATACGACTCGTATTTATTCTGTGTTCATAGCTTTGAATCACCACA
ACCTAAGCTAAGTAGTGTGGCTCAAAGCTGTGGATATGGTGCGTACGGGG
AACCTCCCTGCAAATGCAAATTGGACTTTTCACCCCCACTCTGGGGTGAT
CTGACCGTACGTACGACTCATTTTCTTCAACTTCAACTTGAAGTTGTGGG
ATGTAACGGAAAGTTGCATCATGTGAATCAGTATATATGGTTCACCTATG
CAGGGGAGCACTATCAGTGCCCTGTATAATCATTAAAGTTGAGAAAAACG
AATCTATTACGTACCACATACGTTTTCGTTTTGAAACGTTGCTGACGGAC
ACAATCCGAGACGGACTGAGAACTGGGTAGATGAAGCTAGAGGTTTACAC
CTCTAGCGCGGCGAAGCTAGGGGACCAGACAAGGCTCCTGACACGCGCTC
CGCCTGCTACGCTACTGCTCGTAGGTGAGGAAAAGAGAACGCTACGGATA
GCTCATGCTAAACAACATGGAGCCACCGTGTCGCCGCACGGATTGGTTCA
ATGTGCTGCACATGCTTGGCATTGTTTGCACAATGTATAGATTTCGTGCC
GGCGTCATAGTGCTGATTACATCATGATAAGATGCACTTTCTACAGAAGT
TCGGCGCGGAAACTCATATCATCAGTAAACGACGGTGGCGTCAAATATTG
ACGAGGCCATGTGGCTCGCACATGAGCATCTGGGGGGCAACGGCGGGAAC
ATGGCTTATTCTAACAATTGCACGAGGACAGAGCGGCAACCAGATGGCAC
GGCCAAATATTTGTTTGTACGCGAGACCTATGGTTCGAGGGCGTGCGGGG
TTGCACTGCAATTGCAGCTGTTGTCGTATAGGCATGTTGCTGAGGTCAGT
AGCACCCGTGTTGTGGCGTCGTGGCATGAGCTGCGTTCTCGACAACCTCT
GACGCTGTCCATGATCATGAAATCAATCTGCTCTCCTTGCATGGAGTGCT
CGCTCGTCATTCACGCCACCTTTCATGTCCGGCAACGGAGGTATGGAATG
GCCCTCGCTTCAAAACACCAGGGAGAGGGAAGAAACGTTGCATGTCGTGC
CATCGCATGAGCCTTGCGAGTTCGGGACTTGTGCGTTGAACTAAGCATCG
GATGTCGCCATGAACACCCATGCAAATTTACACATCACTTGGTAGGAGTG
GGATGATTCATAGTCCTGACTGATGCACGTAGTTCTCTAAACCTAGAGGC
CACTCCCTCCCAGCAACACAGTGTTGCTCTCTGTACACTGACACTGCGGT
GCATGCTTAGCTCACACACAATGCGGACACCCTCGCGTTTCATTTGTTGC
AGGGCATGGACTTCACTGCTGATGATGTCATCACCATGACCAAGGCCACC
AGGTACATGCTCACTTGCTCATGTGCTCACATGAGTGTGTCTGCAGAGCA
TGCCAGAGCAGAATGCAGCTCGCTGCTGCTGCTGCTGCGTTGTCACCTAC
AGCTCCTCCGCAACTGCACTGCCAACAAGGCCAGGCATTATGTCTTGATT
TCATGTCTCGGTGTTCATCGCCCATCAGATCATGCATAGTTTTTATTGAC
AGCACATGAGTGTACTCACTGACTGCTACTGGTGTTTGCGCTGCCATGTG
CATTCAATTCAGGGCCCTGCTGCCCAAGACGCCTCTGTCTGTGACCATTC
CCCACAAGCTGCACATGGACCAGCAGGTCACTTTGGCACAGGCAAGTGCT
TGTGTTTATGCGTGACACCGCTACATGAGTAATGTTTACTCAGACAAGTG
CTTGTTTTCATACATGACACTACATGAGTAATTTTGGCTCAGGCAAGTGC
TTGTGTCCAAGCATAACAATGCTACTCGTGTGCAAATTCATGCGACCTCC
TGTAAAGAAAGCATTGCGTGTGACGCCATGTTACACACAAAGCATTGTGC
ATGCATGCTGCTACGGATTATTGAATGCAGGACCTCACAAGACCTCCTCA
TCAACTCATTACAACTGCCCCTGTGGGGGTGTTGAGAATTGTGTAGCTTG
CTTTTGTGTGTTTCTGCAGCCTGCGCTATCTCTGCAATGAACCATCACCG
GCTGAAAACCACTACACTTACCCACCGCACAATACCCTAACGTTTGGCTG
TTGACCATGATGTGTTGATGCGTGCAGGCGCTGCAGGAGCTGGGTGTGGA
TGTTATCCAGACTGAGGGTGAGTGATGGGCTGCCATGTACACATGAAAAT
GAATCAAAAGATCATAGAGCTGTAGGTGACAAGGGGGGGTTCGCCGCAAG
TGCCTTCCACCAACAACCGTGGTCGCCGTTGCTGCAGTCATTGGCCACGA
GTCAAACAGTGCCATCACATCCACTGTGTCGAAAGACTTCTGTGTGCAAG
CTTTCTTGACGGCTGAGGCATGGCAGTACACATTGTTCCATAGGCAAGGT
TGTGGACTCTGCGCATGCTGCTAAGCGGCAGCTTACGATGCAAGGTGCCT
GCAACACGGTGCCAATTCTATGTGCAACAAACACTGGTCTTTGAAAGTTG
CGCAAGAGCTCATTCGCATGCCGTTTGTCCAACAGATACACTGCTGCATG
TCCACTTGTTGGCACCCGCTGATGCCATGCTCCCCTGCACGCTTACCGCA
GCTTACTCCAAAGTTGCGCTTTGGCTGACGCGTGTGATGACTGTCAACGG
TTCTGTTTTGTTGAGCGCAGGCAAGTACTCATTGGACCCCTCTGCTGGCG
GGCTCCAGGGCGTGATTGAACGGGCAGCCCCCGCCTTGGCTGCCACGTAT
GCTATCGCCAGGTGAGCGCTGCGCAGAGTCATTGGTGTGCGATGTGCAAG
TAGCTTCATGGGCCTCGTGCACTGGCGCAGCCATCCACGGTGCTGATCAC
AACGTGCTGCAGATGGCTAAGTTGCGTTTGATTTTTTGTGCAAACCTTGT
TGCGAGCACACCATGAGTAGCTGGTCACTCGCACTATGGTCTATTGCATT
GACTCTACACACAAATTGCGCTTAGAACACAATTTCAAGCGCCTGTTGCA
CAGCACTGACTCATAGCATGTTCAACAAAAACAGGCCCTCGCGCGCATCA
CTTTTCGTGGTGCATGGTGTACAATACGCCAATTTACCGGCTAAACATGT
ATGCTAAGAGCACTTAAATTCAAGCACTGATTGTGGTTCAACAGATGGGC
ATCACACCAGCACAGATCTCATGTCAGCAGTGTGTTGTGTTTTTGTGGTG
CTATGTAATGGTATATTTAAACTCACCCTGCTTGTATTGGCAAACTGCTG
TACTGTTGCAGGGCTGTGGACATCCCTGTCATGACTTCCTCCGGCATCAG
TGAGGTCAGTGCCATGCCGTGAACATGCATGCTTCTGATGTCAATTTTGT
GCAGTCACCTGCACTACTAGCAGGCACCACTAGCAGCGCCTTCAACGTAG
GCAGTACGACTGGAGCAACATCCGCTGATGCGTGTTTCTTTGGAGTTGTG
ATCACTGTGATTTGTGTTGACAAATATCATTAAAATCAATGCGAGCAGGC
GTGTCCCCGATGTTAATGACGTGCAGTTTTGTCAAATCTGAGCTGCACCA
CTGTATCATATCAAAAGCGTGCTTTTTTCACCAATTTTGTGAGAACTTCC
TTTTAATTCCCCAAGTGTACCTTTCTCACTTCCTTCTCCTCAACAGCCGA
TGCACCAGGGACATTGAGGTGCTCATGTGCCAGGTCAACATCTGCAGTAC
AGATCCATGCTGATGTACATGTGTCTTTGTCTTCTGCCATGGCATCGCTC
AGGTGACAGCCAGCATGGCCCTGGCTGCGGGGGCATCTGGGGTGGGCGTG
GGCTCTGCCGTTAACAAGCTCAACGCACAGGTGCGTCTCCCTGCATTTAT
GTTGCCCAGAAAGCTAGTTTGTCAATATTGACGTGTCAATTGTCAACTGG
CTTGGCCGGATGCCCGCTTGCATACTCGTTATGCTGCAGCATTGTGTGAG
GTTGCAGTGCAGGCGTCAACATGGTTCAACATTGGCAGCACTGCTGCGTG
TATTGTGTCAGGCTTTGCGTGAGCGTGCCGTTCTCACTTTGGCTGCTGAT
TGGTGTGCACATTGCAGGTGGCCATGATCGCCGTTGTACGCGCGCTTGCC
ATTGCCATGGACCTGCCTGCGCCAGCGACCATGCCTGTGGAGCAGAAGGC
TTCCACTATGGCATAGGAGAGACAAGTTCGTACGGGAGCGCAGCGCTGCT
GCACTTTGAATCGCAGGTTTCGTTCAAGAGAAGACAGGGTGTTCGCTCAA
GCCCTGGATCTCTGCAATAGTCTACACGTGACAGTCA
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Coding sequence (CDS) from alignment at Contig_87:245733..251319-

>mRNA_14760 ID=mRNA_14760|Name=jgi.p|Trimin1|351322|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=837bp|location=Sequence derived from alignment at Contig_87:245733..251319- (Tribonema minus UTEX_B_3156 )
ATGGCTCTCAAGGTGACTGCTGCGGCCGTGGTGGCGTCGCTGTGCGGCGT
GGAGGGATTCATGACCATGTCTGGCGACGCCATCGCCCCCTTCAGGGCGC
ACAAGGCTCTCAAGATCATCAGCGGCATCACCAACTTCGACAGCGAGCTG
GTGCGCAAGGTGGCTGTGGCCGCACAGGCTGGCGGCGCCACACACCTTGA
CATTGCTGCTGATCCGGAGCTGGTGAAGTTGGCCAAGAGGACTGCACCCT
CAGTCAGCATCTGCGTGAGCGCCATTGAGCCTGAGCTGCTGGTGCCGTGC
GTGGAGGCGGGGGCGGACATGGTGGAGCTTGGAAACTTTGACATGTTCTA
CGACCAGGGCATGGACTTCACTGCTGATGATGTCATCACCATGACCAAGG
CCACCAGGGCCCTGCTGCCCAAGACGCCTCTGTCTGTGACCATTCCCCAC
AAGCTGCACATGGACCAGCAGGTCACTTTGGCACAGGCGCTGCAGGAGCT
GGGTGTGGATGTTATCCAGACTGAGGGCAAGTACTCATTGGACCCCTCTG
CTGGCGGGCTCCAGGGCGTGATTGAACGGGCAGCCCCCGCCTTGGCTGCC
ACGTATGCTATCGCCAGGGCTGTGGACATCCCTGTCATGACTTCCTCCGG
CATCAGTGAGGTGACAGCCAGCATGGCCCTGGCTGCGGGGGCATCTGGGG
TGGGCGTGGGCTCTGCCGTTAACAAGCTCAACGCACAGGTGGCCATGATC
GCCGTTGTACGCGCGCTTGCCATTGCCATGGACCTGCCTGCGCCAGCGAC
CATGCCTGTGGAGCAGAAGGCTTCCACTATGGCATAG
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