mRNA_13680 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351288
Unique NamemRNA_13680
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|351288 vs. uniprot
Match: A0A835YIS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS8_9STRA)

HSP 1 Score: 963 bits (2490), Expect = 0.000e+0
Identity = 546/546 (100.00%), Postives = 546/546 (100.00%), Query Frame = 1 
Query:    1 MLVESQPARRHDLFDLMDFHVPTNAAHAAEKKGLKRGAGAAATLGMTSVEGATCLPEDATLYTRARFSLPAVAYTVLHAAPAEHELRGMHTFCAPWAAAAGCAPTVATQQQCADATAAARANVANAVSEWQAATMYWVHPATALPPSAMSAQGRAMDVLSQADVALERAPHGMESITGWSAFYLVRRQDWQEAFRSLFYSLWSPGPTAAAHPGGTGGNGGGDACSFYLRTVTHTTFFHATTDASGQRSVAAVITRSSRQSRRQLTDAGVAFAMPLDTTNAHRHVSADPADAAAAAAALARLRDESAYVGRDNASARPHTTLLLVRSQESLVALYEAELERWGPQGGGGGLVAGKAQDVPLLLAARPFLHATLRRLQPRVSGAIAGLARGGQRXXXXXXXXXXXXXXXGGTLTHQLELAGPMLPCTVRRLAAAAARVXXXXXXXXXXXXXXXXXXXXXXGGDENSQRGGGSEGSGDTLSFALSLRVEEATAYLNAAGVVAGTGTAYLTSVEGEAKACGGQRRGDGGGDGDVMYAYTTLDPELHAQSM 1638
            MLVESQPARRHDLFDLMDFHVPTNAAHAAEKKGLKRGAGAAATLGMTSVEGATCLPEDATLYTRARFSLPAVAYTVLHAAPAEHELRGMHTFCAPWAAAAGCAPTVATQQQCADATAAARANVANAVSEWQAATMYWVHPATALPPSAMSAQGRAMDVLSQADVALERAPHGMESITGWSAFYLVRRQDWQEAFRSLFYSLWSPGPTAAAHPGGTGGNGGGDACSFYLRTVTHTTFFHATTDASGQRSVAAVITRSSRQSRRQLTDAGVAFAMPLDTTNAHRHVSADPADAAAAAAALARLRDESAYVGRDNASARPHTTLLLVRSQESLVALYEAELERWGPQGGGGGLVAGKAQDVPLLLAARPFLHATLRRLQPRVSGAIAGLARGGQRXXXXXXXXXXXXXXXGGTLTHQLELAGPMLPCTVRRLAAAAARVXXXXXXXXXXXXXXXXXXXXXXGGDENSQRGGGSEGSGDTLSFALSLRVEEATAYLNAAGVVAGTGTAYLTSVEGEAKACGGQRRGDGGGDGDVMYAYTTLDPELHAQSM
Sbjct:    1 MLVESQPARRHDLFDLMDFHVPTNAAHAAEKKGLKRGAGAAATLGMTSVEGATCLPEDATLYTRARFSLPAVAYTVLHAAPAEHELRGMHTFCAPWAAAAGCAPTVATQQQCADATAAARANVANAVSEWQAATMYWVHPATALPPSAMSAQGRAMDVLSQADVALERAPHGMESITGWSAFYLVRRQDWQEAFRSLFYSLWSPGPTAAAHPGGTGGNGGGDACSFYLRTVTHTTFFHATTDASGQRSVAAVITRSSRQSRRQLTDAGVAFAMPLDTTNAHRHVSADPADAAAAAAALARLRDESAYVGRDNASARPHTTLLLVRSQESLVALYEAELERWGPQGGGGGLVAGKAQDVPLLLAARPFLHATLRRLQPRVSGAIAGLARGGQRXXXXXXXXXXXXXXXGGTLTHQLELAGPMLPCTVRRLAAAAARVXXXXXXXXXXXXXXXXXXXXXXGGDENSQRGGGSEGSGDTLSFALSLRVEEATAYLNAAGVVAGTGTAYLTSVEGEAKACGGQRRGDGGGDGDVMYAYTTLDPELHAQSM 546
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BLAST of jgi.p|Trimin1|351288 vs. uniprot
Match: A0A835YNK7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNK7_9STRA)

HSP 1 Score: 176 bits (445), Expect = 9.350e-55
Identity = 94/94 (100.00%), Postives = 94/94 (100.00%), Query Frame = 3 
Query:   45 MALRLAALRVGQVSSAALRTPAIAISTRAMNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKIANVELKELLGPHQLPDDVLEKLIEWKFKQ 326
            MALRLAALRVGQVSSAALRTPAIAISTRAMNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKIANVELKELLGPHQLPDDVLEKLIEWKFKQ
Sbjct:    1 MALRLAALRVGQVSSAALRTPAIAISTRAMNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKIANVELKELLGPHQLPDDVLEKLIEWKFKQ 94
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BLAST of jgi.p|Trimin1|351288 vs. uniprot
Match: A0A835ZP46_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZP46_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.740e-19
Identity = 51/98 (52.04%), Postives = 72/98 (73.47%), Query Frame = 3 
Query:   45 MALRLAALRVGQVSSA-ALRTPAIAISTRA-MNGYISFNEREKGEELVHIRQQEKELLLKLRQNKKIANVELKELLGPH--QLPDDVLEKLIEWKFKQ 326
            MAL     R   V++  ALR PA+A+  R  M+G+ + NEREKGEELVH+R++EK LL+KLR+N + +  ELKE+LGP+  +LP DV+EKL++WK K+
Sbjct:    1 MALTAVRARAATVAALRALRHPAMAVPARGVMDGFGNLNEREKGEELVHMRREEKLLLMKLRENLRTSRTELKEILGPYAAKLPGDVVEKLLDWKAKK 98
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351288 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YIS8_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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BLAST of jgi.p|Trimin1|351288 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A835YNK7_9STRA9.350e-55100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZP46_9STRA1.740e-1952.04Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_86contigContig_86:217188..219011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351288|estExt_Genemark1.C_Ctg_860024
BRITEko00000,ko03400
KEGG koko:K22422
Max annot lvl2759|Eukaryota
EggNOG OGsCOG4646@1|root,2S4NF@2759|Eukaryota
Evalue7.25e-05
Seed ortholog112098.XP_008604082.1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_002020.1
TranscriptId351610
TrackFilteredModels1
ProteinId351288
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351288gene_13680Tribonema minus UTEX_B_3156 geneContig_86 217188..219011 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13680_1exon_13680_1Tribonema minus UTEX_B_3156 exonContig_86 217188..217670 +
exon_13680_2exon_13680_2Tribonema minus UTEX_B_3156 exonContig_86 217843..219011 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13680CDS_13680Tribonema minus UTEX_B_3156 CDSContig_86 217188..217670 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13680UTR3_13680Tribonema minus UTEX_B_3156 three_prime_UTRContig_86 219001..219011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351288Trimin1|351288|estExt_Genemark1.C_Ctg_860024Tribonema minus UTEX_B_3156 polypeptideContig_86 217188..219000 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13680 ID=mRNA_13680|Name=jgi.p|Trimin1|351288|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1652bp|location=Sequence derived from alignment at Contig_86:217188..219011+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTCGTGGAAAGTCAGCCAGCGAGGAGGCACGATCTGTTCGATCTCAT
GGACTTCCACGTGCCAACCAATGCTGCACATGCAGCAGAAAAGAAGGGAT
TGAAACGAGGCGCGGGAGCGGCGGCAACCCTGGGCATGACCTCTGTAGAG
GGCGCCACGTGTTTGCCCGAAGATGCCACCCTCTACACGCGAGCCCGCTT
CAGCCTCCCTGCTGTGGCGTACACTGTGCTGCATGCGGCGCCTGCGGAGC
ACGAACTGCGCGGCATGCACACCTTCTGTGCGCCATGGGCAGCGGCTGCT
GGTTGTGCACCGACCGTTGCGACGCAGCAGCAGTGCGCAGACGCAACAGC
AGCCGCGCGTGCCAATGTTGCTAACGCCGTTTCAGAGTGGCAGGCAGCGA
CCATGTACTGGGTGCACCCAGCGACGGCGCTGCCGCCATCGGCGATGAGC
GCACAAGGACGCGCCATGGACGTCTTGTCACAGGCCGATGTTGCCCTGGA
GCGAGCGCCACACGGCATGGAATCCATCACTGGCTGGTCAGCCTTCTACC
TCGTGCGCAGGCAGGACTGGCAGGAAGCGTTCCGCTCCCTCTTCTACTCT
CTCTGGTCGCCCGGTCCCACCGCTGCCGCTCACCCCGGCGGCACCGGCGG
AAACGGGGGCGGCGATGCGTGCAGCTTCTACCTCCGCACCGTCACGCACA
CCACCTTCTTCCATGCGACGACGGATGCTAGCGGCCAGCGCAGCGTCGCC
GCCGTCATCACGCGCTCCAGCCGCCAGTCGCGGCGCCAGCTCACGGACGC
CGGCGTCGCCTTCGCCATGCCGCTCGACACCACCAACGCGCACCGCCACG
TCTCGGCAGACCCGGCCGACGCAGCAGCGGCAGCAGCAGCGCTCGCCAGA
CTGCGCGACGAGAGCGCCTACGTGGGGAGGGACAACGCGAGTGCGCGCCC
TCACACGACACTGCTGCTTGTGCGCAGCCAGGAGTCGCTGGTGGCGCTGT
ACGAGGCCGAGCTGGAGCGCTGGGGGCCGCAGGGCGGCGGCGGCGGCCTC
GTCGCGGGCAAGGCGCAGGACGTGCCGCTGCTGCTCGCGGCGCGGCCGTT
CCTGCACGCGACGCTGCGCCGCCTGCAGCCGCGCGTGTCCGGCGCCATCG
CCGGCCTGGCCCGCGGCGGACAGCGGCAGCAGCGGCAGCAGCAGCAGCAG
GCGTCTGCGGGCGCTGCTGCGGGGGGAACGCTGACGCATCAGCTGGAGCT
GGCGGGGCCCATGCTGCCGTGCACGGTGCGGCGGCTGGCGGCGGCGGCGG
CGCGCGTGTGCCGCGCCGCGACGGAGGCCGCGGAGGCGGCGGCGGCTGAG
GAGCCCGATGAGAATGATGAGAATGGGGGCGACGAGAACAGCCAGAGGGG
GGGTGGGAGCGAGGGCAGCGGCGACACGCTGTCCTTCGCGCTATCGCTCA
GAGTGGAGGAGGCCACTGCGTATCTGAACGCTGCGGGGGTTGTTGCGGGG
ACGGGCACTGCGTATCTGACTAGCGTGGAGGGAGAAGCGAAGGCGTGCGG
GGGGCAGCGGCGAGGGGATGGCGGAGGTGATGGTGATGTCATGTACGCGT
ATACTACGCTGGACCCAGAACTGCACGCGCAGTCCATGTAAATACAGCAG
GC
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protein sequence of jgi.p|Trimin1|351288

>Trimin1|351288|estExt_Genemark1.C_Ctg_860024 ID=Trimin1|351288|estExt_Genemark1.C_Ctg_860024|Name=jgi.p|Trimin1|351288|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=547bp
MLVESQPARRHDLFDLMDFHVPTNAAHAAEKKGLKRGAGAAATLGMTSVE
GATCLPEDATLYTRARFSLPAVAYTVLHAAPAEHELRGMHTFCAPWAAAA
GCAPTVATQQQCADATAAARANVANAVSEWQAATMYWVHPATALPPSAMS
AQGRAMDVLSQADVALERAPHGMESITGWSAFYLVRRQDWQEAFRSLFYS
LWSPGPTAAAHPGGTGGNGGGDACSFYLRTVTHTTFFHATTDASGQRSVA
AVITRSSRQSRRQLTDAGVAFAMPLDTTNAHRHVSADPADAAAAAAALAR
LRDESAYVGRDNASARPHTTLLLVRSQESLVALYEAELERWGPQGGGGGL
VAGKAQDVPLLLAARPFLHATLRRLQPRVSGAIAGLARGGQRQQRQQQQQ
ASAGAAAGGTLTHQLELAGPMLPCTVRRLAAAAARVCRAATEAAEAAAAE
EPDENDENGGDENSQRGGGSEGSGDTLSFALSLRVEEATAYLNAAGVVAG
TGTAYLTSVEGEAKACGGQRRGDGGGDGDVMYAYTTLDPELHAQSM*
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mRNA from alignment at Contig_86:217188..219011+

Legend: exonpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13680 ID=mRNA_13680|Name=jgi.p|Trimin1|351288|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1824bp|location=Sequence derived from alignment at Contig_86:217188..219011+ (Tribonema minus UTEX_B_3156 )
ATGCTCGTGGAAAGTCAGCCAGCGAGGAGGCACGATCTGTTCGATCTCAT
GGACTTCCACGTGCCAACCAATGCTGCACATGCAGCAGAAAAGAAGGGAT
TGAAACGAGGCGCGGGAGCGGCGGCAACCCTGGGCATGACCTCTGTAGAG
GGCGCCACGTGTTTGCCCGAAGATGCCACCCTCTACACGCGAGCCCGCTT
CAGCCTCCCTGCTGTGGCGTACACTGTGCTGCATGCGGCGCCTGCGGAGC
ACGAACTGCGCGGCATGCACACCTTCTGTGCGCCATGGGCAGCGGCTGCT
GGTTGTGCACCGACCGTTGCGACGCAGCAGCAGTGCGCAGACGCAACAGC
AGCCGCGCGTGCCAATGTTGCTAACGCCGTTTCAGAGTGGCAGGCAGCGA
CCATGTACTGGGTGCACCCAGCGACGGCGCTGCCGCCATCGGCGATGAGC
GCACAAGGACGCGCCATGGACGTCTTGTCACAGGTGAGATGTACAGAAGA
TGTGGCATGCAGCCAACAGCAGCGTCAGTACACAAGGAGGTCGGACAGGC
TTCCACTAAGTGCCCGTTACAGTAGCAGCAATGTGCACTCATTGCCACAA
GTACAGCACATGCAACTTCGCTAATTCACATGACCCTGTGCTCCTGTTTC
CGTAGGCCGATGTTGCCCTGGAGCGAGCGCCACACGGCATGGAATCCATC
ACTGGCTGGTCAGCCTTCTACCTCGTGCGCAGGCAGGACTGGCAGGAAGC
GTTCCGCTCCCTCTTCTACTCTCTCTGGTCGCCCGGTCCCACCGCTGCCG
CTCACCCCGGCGGCACCGGCGGAAACGGGGGCGGCGATGCGTGCAGCTTC
TACCTCCGCACCGTCACGCACACCACCTTCTTCCATGCGACGACGGATGC
TAGCGGCCAGCGCAGCGTCGCCGCCGTCATCACGCGCTCCAGCCGCCAGT
CGCGGCGCCAGCTCACGGACGCCGGCGTCGCCTTCGCCATGCCGCTCGAC
ACCACCAACGCGCACCGCCACGTCTCGGCAGACCCGGCCGACGCAGCAGC
GGCAGCAGCAGCGCTCGCCAGACTGCGCGACGAGAGCGCCTACGTGGGGA
GGGACAACGCGAGTGCGCGCCCTCACACGACACTGCTGCTTGTGCGCAGC
CAGGAGTCGCTGGTGGCGCTGTACGAGGCCGAGCTGGAGCGCTGGGGGCC
GCAGGGCGGCGGCGGCGGCCTCGTCGCGGGCAAGGCGCAGGACGTGCCGC
TGCTGCTCGCGGCGCGGCCGTTCCTGCACGCGACGCTGCGCCGCCTGCAG
CCGCGCGTGTCCGGCGCCATCGCCGGCCTGGCCCGCGGCGGACAGCGGCA
GCAGCGGCAGCAGCAGCAGCAGGCGTCTGCGGGCGCTGCTGCGGGGGGAA
CGCTGACGCATCAGCTGGAGCTGGCGGGGCCCATGCTGCCGTGCACGGTG
CGGCGGCTGGCGGCGGCGGCGGCGCGCGTGTGCCGCGCCGCGACGGAGGC
CGCGGAGGCGGCGGCGGCTGAGGAGCCCGATGAGAATGATGAGAATGGGG
GCGACGAGAACAGCCAGAGGGGGGGTGGGAGCGAGGGCAGCGGCGACACG
CTGTCCTTCGCGCTATCGCTCAGAGTGGAGGAGGCCACTGCGTATCTGAA
CGCTGCGGGGGTTGTTGCGGGGACGGGCACTGCGTATCTGACTAGCGTGG
AGGGAGAAGCGAAGGCGTGCGGGGGGCAGCGGCGAGGGGATGGCGGAGGT
GATGGTGATGTCATGTACGCGTATACTACGCTGGACCCAGAACTGCACGC
GCAGTCCATGTAAATACAGCAGGC
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Coding sequence (CDS) from alignment at Contig_86:217188..219011+

>mRNA_13680 ID=mRNA_13680|Name=jgi.p|Trimin1|351288|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1641bp|location=Sequence derived from alignment at Contig_86:217188..219011+ (Tribonema minus UTEX_B_3156 )
ATGCTCGTGGAAAGTCAGCCAGCGAGGAGGCACGATCTGTTCGATCTCAT
GGACTTCCACGTGCCAACCAATGCTGCACATGCAGCAGAAAAGAAGGGAT
TGAAACGAGGCGCGGGAGCGGCGGCAACCCTGGGCATGACCTCTGTAGAG
GGCGCCACGTGTTTGCCCGAAGATGCCACCCTCTACACGCGAGCCCGCTT
CAGCCTCCCTGCTGTGGCGTACACTGTGCTGCATGCGGCGCCTGCGGAGC
ACGAACTGCGCGGCATGCACACCTTCTGTGCGCCATGGGCAGCGGCTGCT
GGTTGTGCACCGACCGTTGCGACGCAGCAGCAGTGCGCAGACGCAACAGC
AGCCGCGCGTGCCAATGTTGCTAACGCCGTTTCAGAGTGGCAGGCAGCGA
CCATGTACTGGGTGCACCCAGCGACGGCGCTGCCGCCATCGGCGATGAGC
GCACAAGGACGCGCCATGGACGTCTTGTCACAGGCCGATGTTGCCCTGGA
GCGAGCGCCACACGGCATGGAATCCATCACTGGCTGGTCAGCCTTCTACC
TCGTGCGCAGGCAGGACTGGCAGGAAGCGTTCCGCTCCCTCTTCTACTCT
CTCTGGTCGCCCGGTCCCACCGCTGCCGCTCACCCCGGCGGCACCGGCGG
AAACGGGGGCGGCGATGCGTGCAGCTTCTACCTCCGCACCGTCACGCACA
CCACCTTCTTCCATGCGACGACGGATGCTAGCGGCCAGCGCAGCGTCGCC
GCCGTCATCACGCGCTCCAGCCGCCAGTCGCGGCGCCAGCTCACGGACGC
CGGCGTCGCCTTCGCCATGCCGCTCGACACCACCAACGCGCACCGCCACG
TCTCGGCAGACCCGGCCGACGCAGCAGCGGCAGCAGCAGCGCTCGCCAGA
CTGCGCGACGAGAGCGCCTACGTGGGGAGGGACAACGCGAGTGCGCGCCC
TCACACGACACTGCTGCTTGTGCGCAGCCAGGAGTCGCTGGTGGCGCTGT
ACGAGGCCGAGCTGGAGCGCTGGGGGCCGCAGGGCGGCGGCGGCGGCCTC
GTCGCGGGCAAGGCGCAGGACGTGCCGCTGCTGCTCGCGGCGCGGCCGTT
CCTGCACGCGACGCTGCGCCGCCTGCAGCCGCGCGTGTCCGGCGCCATCG
CCGGCCTGGCCCGCGGCGGACAGCGGCAGCAGCGGCAGCAGCAGCAGCAG
GCGTCTGCGGGCGCTGCTGCGGGGGGAACGCTGACGCATCAGCTGGAGCT
GGCGGGGCCCATGCTGCCGTGCACGGTGCGGCGGCTGGCGGCGGCGGCGG
CGCGCGTGTGCCGCGCCGCGACGGAGGCCGCGGAGGCGGCGGCGGCTGAG
GAGCCCGATGAGAATGATGAGAATGGGGGCGACGAGAACAGCCAGAGGGG
GGGTGGGAGCGAGGGCAGCGGCGACACGCTGTCCTTCGCGCTATCGCTCA
GAGTGGAGGAGGCCACTGCGTATCTGAACGCTGCGGGGGTTGTTGCGGGG
ACGGGCACTGCGTATCTGACTAGCGTGGAGGGAGAAGCGAAGGCGTGCGG
GGGGCAGCGGCGAGGGGATGGCGGAGGTGATGGTGATGTCATGTACGCGT
ATACTACGCTGGACCCAGAACTGCACGCGCAGTCCATGTAA
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