Trimin1|351288|estExt_Genemark1.C_Ctg_860024 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351288
Unique NameTrimin1|351288|estExt_Genemark1.C_Ctg_860024
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length547
Homology
[Close]
BLAST of jgi.p|Trimin1|351288 vs. uniprot
Match: A0A835YIS8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIS8_9STRA)

HSP 1 Score: 963 bits (2490), Expect = 0.000e+0
Identity = 546/546 (100.00%), Postives = 546/546 (100.00%), Query Frame = 0 
Query:    1 MLVESQPARRHDLFDLMDFHVPTNAAHAAEKKGLKRGAGAAATLGMTSVEGATCLPEDATLYTRARFSLPAVAYTVLHAAPAEHELRGMHTFCAPWAAAAGCAPTVATQQQCADATAAARANVANAVSEWQAATMYWVHPATALPPSAMSAQGRAMDVLSQADVALERAPHGMESITGWSAFYLVRRQDWQEAFRSLFYSLWSPGPTAAAHPGGTGGNGGGDACSFYLRTVTHTTFFHATTDASGQRSVAAVITRSSRQSRRQLTDAGVAFAMPLDTTNAHRHVSADPADAAAAAAALARLRDESAYVGRDNASARPHTTLLLVRSQESLVALYEAELERWGPQGGGGGLVAGKAQDVPLLLAARPFLHATLRRLQPRVSGAIAGLARGGQRXXXXXXXXXXXXXXXGGTLTHQLELAGPMLPCTVRRLAAAAARVXXXXXXXXXXXXXXXXXXXXXXGGDENSQRGGGSEGSGDTLSFALSLRVEEATAYLNAAGVVAGTGTAYLTSVEGEAKACGGQRRGDGGGDGDVMYAYTTLDPELHAQSM 546
            MLVESQPARRHDLFDLMDFHVPTNAAHAAEKKGLKRGAGAAATLGMTSVEGATCLPEDATLYTRARFSLPAVAYTVLHAAPAEHELRGMHTFCAPWAAAAGCAPTVATQQQCADATAAARANVANAVSEWQAATMYWVHPATALPPSAMSAQGRAMDVLSQADVALERAPHGMESITGWSAFYLVRRQDWQEAFRSLFYSLWSPGPTAAAHPGGTGGNGGGDACSFYLRTVTHTTFFHATTDASGQRSVAAVITRSSRQSRRQLTDAGVAFAMPLDTTNAHRHVSADPADAAAAAAALARLRDESAYVGRDNASARPHTTLLLVRSQESLVALYEAELERWGPQGGGGGLVAGKAQDVPLLLAARPFLHATLRRLQPRVSGAIAGLARGGQRXXXXXXXXXXXXXXXGGTLTHQLELAGPMLPCTVRRLAAAAARVXXXXXXXXXXXXXXXXXXXXXXGGDENSQRGGGSEGSGDTLSFALSLRVEEATAYLNAAGVVAGTGTAYLTSVEGEAKACGGQRRGDGGGDGDVMYAYTTLDPELHAQSM
Sbjct:    1 MLVESQPARRHDLFDLMDFHVPTNAAHAAEKKGLKRGAGAAATLGMTSVEGATCLPEDATLYTRARFSLPAVAYTVLHAAPAEHELRGMHTFCAPWAAAAGCAPTVATQQQCADATAAARANVANAVSEWQAATMYWVHPATALPPSAMSAQGRAMDVLSQADVALERAPHGMESITGWSAFYLVRRQDWQEAFRSLFYSLWSPGPTAAAHPGGTGGNGGGDACSFYLRTVTHTTFFHATTDASGQRSVAAVITRSSRQSRRQLTDAGVAFAMPLDTTNAHRHVSADPADAAAAAAALARLRDESAYVGRDNASARPHTTLLLVRSQESLVALYEAELERWGPQGGGGGLVAGKAQDVPLLLAARPFLHATLRRLQPRVSGAIAGLARGGQRXXXXXXXXXXXXXXXGGTLTHQLELAGPMLPCTVRRLAAAAARVXXXXXXXXXXXXXXXXXXXXXXGGDENSQRGGGSEGSGDTLSFALSLRVEEATAYLNAAGVVAGTGTAYLTSVEGEAKACGGQRRGDGGGDGDVMYAYTTLDPELHAQSM 546
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351288 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A835YIS8_9STRA0.000e+0100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 445..475
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 390..405
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 386..405
NoneNo IPR availablePANTHERPTHR12972:SF0PROTEIN DOWNSTREAM NEIGHBOR OF SONcoord: 225..445
coord: 50..201
IPR024861DonsonPANTHERPTHR12972DOWNSTREAM NEIGHBOR OF SONcoord: 225..445
coord: 50..201

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_86contigContig_86:217188..219000 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351288mRNA_13680Tribonema minus UTEX_B_3156 mRNAContig_86 217188..219011 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351288|estExt_Genemark1.C_Ctg_860024 ID=Trimin1|351288|estExt_Genemark1.C_Ctg_860024|Name=jgi.p|Trimin1|351288|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=547bp
MLVESQPARRHDLFDLMDFHVPTNAAHAAEKKGLKRGAGAAATLGMTSVE
GATCLPEDATLYTRARFSLPAVAYTVLHAAPAEHELRGMHTFCAPWAAAA
GCAPTVATQQQCADATAAARANVANAVSEWQAATMYWVHPATALPPSAMS
AQGRAMDVLSQADVALERAPHGMESITGWSAFYLVRRQDWQEAFRSLFYS
LWSPGPTAAAHPGGTGGNGGGDACSFYLRTVTHTTFFHATTDASGQRSVA
AVITRSSRQSRRQLTDAGVAFAMPLDTTNAHRHVSADPADAAAAAAALAR
LRDESAYVGRDNASARPHTTLLLVRSQESLVALYEAELERWGPQGGGGGL
VAGKAQDVPLLLAARPFLHATLRRLQPRVSGAIAGLARGGQRQQRQQQQQ
ASAGAAAGGTLTHQLELAGPMLPCTVRRLAAAAARVCRAATEAAEAAAAE
EPDENDENGGDENSQRGGGSEGSGDTLSFALSLRVEEATAYLNAAGVVAG
TGTAYLTSVEGEAKACGGQRRGDGGGDGDVMYAYTTLDPELHAQSM*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR024861Donson