mRNA_13694 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|95356
Unique NamemRNA_13694
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|95356 vs. uniprot
Match: A0A835YIF9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIF9_9STRA)

HSP 1 Score: 304 bits (779), Expect = 6.570e-102
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 2 
Query:  110 MPAKGSKKKTSKSPTRKSNAANKEDLDGLDELLADPALMKQFEDKTVPPAKKKTGAENARIGMEGFSQATKNPAMFAEAMSMLSDPNAVKXXXXXXXXXXXXXXXQRHMASLKMDPSFQEAMQTAQSKFQELMQDPEKLQQLQAQVQENGLAALAAAPPADADAAGGAPVSALADLGIDEESTA 661
            MPAKGSKKKTSKSPTRKSNAANKEDLDGLDELLADPALMKQFEDKTVPPAKKKTGAENARIGMEGFSQATKNPAMFAEAMSMLSDPNAVKXXXXXXXXXXXXXXXQRHMASLKMDPSFQEAMQTAQSKFQELMQDPEKLQQLQAQVQENGLAALAAAPPADADAAGGAPVSALADLGIDEESTA
Sbjct:    1 MPAKGSKKKTSKSPTRKSNAANKEDLDGLDELLADPALMKQFEDKTVPPAKKKTGAENARIGMEGFSQATKNPAMFAEAMSMLSDPNAVKXXXXXXXXXXXXXXXQRHMASLKMDPSFQEAMQTAQSKFQELMQDPEKLQQLQAQVQENGLAALAAAPPADADAAGGAPVSALADLGIDEESTA 184
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BLAST of jgi.p|Trimin1|95356 vs. uniprot
Match: A0A835ZF98_9STRA (EGF-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZF98_9STRA)

HSP 1 Score: 129 bits (324), Expect = 4.790e-30
Identity = 106/188 (56.38%), Postives = 122/188 (64.89%), Query Frame = 2 
Query:  200 ELLADPALMKQFEDKT-----------------------VPPAKKK---------TGAENARIGMEGFSQATKNPAMFAEAMSMLSDPNAVKXXXXXXXXXXXXXXXQRHMASLKMDPSFQEAMQTAQSKFQELMQDPEKLQQLQAQVQENGLAALA---AAPPADADAAGGAPVSALADLGIDEEST 658
            ELLAD  LMKQFEDKT                       VPP +K          +GAENARIGMEGF  AT NP MFAEAMSMLSDPNAVKXXXXXXXXXXXXXX Q+HMASLK DP+FQ+AM +AQ+KFQ+L++DP KLQ+LQ+Q  +   AA     AA  A+A A G   V   AD GIDE ++
Sbjct:  492 ELLADEELMKQFEDKTXXXXXXXXXXXXXXXXXXXXXXTVPPTRKSPDQPRPKPVSGAENARIGMEGFKAATGNPQMFAEAMSMLSDPNAVKXXXXXXXXXXXXXXIQKHMASLKSDPAFQDAMLSAQAKFQDLIKDPTKLQELQSQYADIAAAAATTGDAAIEAEAPAEGAEEV---ADPGIDEATS 676
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BLAST of jgi.p|Trimin1|95356 vs. uniprot
Match: D7G5P4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P4_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 4.410e-22
Identity = 69/144 (47.92%), Postives = 102/144 (70.83%), Query Frame = 2 
Query:  122 GSKKKT-----SKSPTRKSNAANKEDLDGLDELLADPALMKQFEDKTVPPA--KKKTGAENARIGMEGFSQATKNPAMFAEAMSMLSDPNAVKXXXXXXXXXXXXXXXQRHMASLKMDPSFQEAMQTAQSKFQELMQDPEKLQQ 532
            G+KKK      +K+   +SNAANK+DL GLDE+L++P  M + + + V  +  K ++G +NA+IG++GF+QAT+NPAMF +AMSML DP+   XXXXXXXXX       ++M +LK + +F++AM  AQ K+Q L+ DPEK++Q
Sbjct:    3 GNKKKNKGANKAKNAPARSNAANKDDLAGLDEILSNPEQMAEAQREAVEASGFKPRSGKQNAQIGLKGFTQATQNPAMFKDAMSMLGDPSXXXXXXXXXXXXEFKSEINQYMETLKNNSAFRDAMAEAQRKYQALLADPEKMKQ 146
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|95356 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A835YIF9_9STRA6.570e-102100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZF98_9STRA4.790e-3056.38EGF-like domain-containing protein n=1 Tax=Tribone... [more]
D7G5P4_ECTSI4.410e-2247.92Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_86contigContig_86:395847..399461 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|95356|CE95355_137
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_008620.1
TranscriptId95678
TrackFilteredModels1
ProteinId95356
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|95356gene_13694Tribonema minus UTEX_B_3156 geneContig_86 395847..399461 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|95356Trimin1|95356|CE95355_137Tribonema minus UTEX_B_3156 polypeptideContig_86 396043..399255 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_13694_1exon_13694_1Tribonema minus UTEX_B_3156 exonContig_86 395847..395955 +
exon_13694_2exon_13694_2Tribonema minus UTEX_B_3156 exonContig_86 396043..396111 +
exon_13694_3exon_13694_3Tribonema minus UTEX_B_3156 exonContig_86 396745..396954 +
exon_13694_4exon_13694_4Tribonema minus UTEX_B_3156 exonContig_86 397639..397701 +
exon_13694_5exon_13694_5Tribonema minus UTEX_B_3156 exonContig_86 398650..398709 +
exon_13694_6exon_13694_6Tribonema minus UTEX_B_3156 exonContig_86 399103..399461 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_13694UTR5_13694Tribonema minus UTEX_B_3156 five_prime_UTRContig_86 395847..395955 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_13694CDS_13694Tribonema minus UTEX_B_3156 CDSContig_86 396043..396111 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_13694UTR3_13694Tribonema minus UTEX_B_3156 three_prime_UTRContig_86 399256..399461 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_13694 ID=mRNA_13694|Name=jgi.p|Trimin1|95356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=870bp|location=Sequence derived from alignment at Contig_86:395847..399461+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
GAAAAGAGCAAGCAAGTCAGCTGCTGCGCCCTGTGCTGTTACGAGGAGCT
GACTTGATTGAAGCAGGACCTTCTTCCTTCAGCGCGAACCTGCTGGGCAC
GGTCCAATAATGCCGGCGAAGGGCAGCAAGAAGAAAACCAGCAAGTCGCC
GACTCGCAAGTCAAATGCGGCCAACAAGGAGGACTTGGACGGACTGGATG
AGCTGCTGGCGGACCCGGCGCTGATGAAGCAGTTTGAGGACAAGACGGTG
CCGCCGGCCAAGAAGAAGACAGGGGCGGAGAATGCGCGCATTGGCATGGA
GGGCTTCTCGCAGGCGACTAAGAACCCCGCCATGTTCGCGGAGGCCATGA
GCATGCTCAGCGACCCCAACGCCGTCAAGGAGGCGCAGTCCATGATGGAG
GACCCGGAGTTCAAGCGCGAAATCCAGCGACACATGGCGAGCTTGAAAAT
GGACCCTTCCTTCCAAGAGGCCATGCAGACTGCCCAGAGCAAGTTCCAGG
AGCTCATGCAGGACCCGGAGAAGCTGCAGCAGCTGCAGGCGCAGGTGCAG
GAGAACGGCCTCGCGGCGCTGGCTGCGGCACCCCCCGCAGACGCGGACGC
AGCGGGGGGCGCCCCCGTGTCAGCGCTCGCCGATCTGGGCATCGACGAGG
AGTCAACGGCGTAACGGTTGTTCGTTCTCGCAGGCTTAGAGAGACGTATT
CGAGTTCAAGGTCGCACTCCCCTGTCTTTCTGCGGGCCTTCTGCACAGTG
ATCATGTAGCGGTGGATTCAGCAGACCCCCCTCTTCCCCCCCTCCCCCCC
CATTCTGTGACCCGCACGCGCCCTCATGGCTGAATTGGGGACGGTTTGGG
AGGAGCTGGGTGGATCCCGC
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protein sequence of jgi.p|Trimin1|95356

>Trimin1|95356|CE95355_137 ID=Trimin1|95356|CE95355_137|Name=jgi.p|Trimin1|95356|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=185bp
MPAKGSKKKTSKSPTRKSNAANKEDLDGLDELLADPALMKQFEDKTVPPA
KKKTGAENARIGMEGFSQATKNPAMFAEAMSMLSDPNAVKEAQSMMEDPE
FKREIQRHMASLKMDPSFQEAMQTAQSKFQELMQDPEKLQQLQAQVQENG
LAALAAAPPADADAAGGAPVSALADLGIDEESTA*
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mRNA from alignment at Contig_86:395847..399461+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_13694 ID=mRNA_13694|Name=jgi.p|Trimin1|95356|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3615bp|location=Sequence derived from alignment at Contig_86:395847..399461+ (Tribonema minus UTEX_B_3156 )
GAAAAGAGCAAGCAAGTCAGCTGCTGCGCCCTGTGCTGTTACGAGGAGCT
GACTTGATTGAAGCAGGACCTTCTTCCTTCAGCGCGAACCTGCTGGGCAC
GGTCCAATAGTGAGTGAAAGCCCAGAAAACTGAAAACGCTTTTTGGGTGA
GCTGCTCGAAGTTTGATTCCTCACTCTGCCTCTCCTGCTGCTGCAGATGC
CGGCGAAGGGCAGCAAGAAGAAAACCAGCAAGTCGCCGACTCGCAAGTCA
AATGCGGCCAACAAGGTGCGTGTGAGCGCTCTTGGCATGCCTTGCGAAAC
AGTTTTGTATGCATGACATACTGTCGCAAGTTGTTTCCAAGCTCGAACAG
CAACCCTTTCCAAAAGCAAAGACTCTCTTGTACTTTCAAGTCTTCGGCAG
CGCCGTTGCCTGCACTTGCACGGCGCACATCGTCAGCGAAGCCGAAGCGA
AGCACCAACACACAACATGGACATGAGGGGGGCCATGCACACGAAGTTCT
GCAATCATGTTAGCCCTGTCCTCGCTGGTGGCTGCAAGGCTGACATCCCC
GCAAACGCACACACAGTCGAGTATAGCATTGCGTTGCCATTGACATAACC
TAAAGTCGCTCGCAGTGACGAGTACATTCTTTGTGGAAACTGGACTTGGG
AAATTCAGAGTGAATGTCTCCCATTGCAGCAGCAAAATCATCACAGACTT
TGACGTCAACACCTGCTGAAGCTACCCATTGCCGAAGGACGGTCTGGATG
AGCTGCTGGCACACTCTGCGTGGATGCCAATCCTGACACCAAGCAATACC
AACTCTGAGTCAAACCCCATCACTGTGGAGGGATGTAAATGATGCCAAAG
AGGCTGACCGCGCTCTTATTTATAATCATGTTGAACTTAAACCCTCAGGA
GGACTTGGACGGACTGGATGAGCTGCTGGCGGACCCGGCGCTGATGAAGC
AGTTTGAGGACAAGACGGTGCCGCCGGCCAAGAAGAAGACAGGGGCGGAG
AATGCGCGCATTGGCATGGAGGGCTTCTCGCAGGCGACTAAGAACCCCGC
CATGTTCGCGGAGGCCATGAGCATGCTCAGCGACCCCAACGCCGTCAAGG
AGGCGCAGGTTCGTGATGCTGTGCGCTTCAGGAAGTACTGTACTGAGCAT
CCCTATAGCATAGAGCTACTCCTGAAATCCTATCAAGTAGCTCGTTAACA
GCCCAAGTAGCTGTAATCAGCCCTGGTTGGGGTTTGCACTACTTTGTCAA
TCGCCTTTGTCAGTTATCTGCCCTTGCTCGGGGTGCATGCGACCTGCGTC
CAAGCACTACATGGTCATGAGGTCGTATGCCCTTTACAAGCCGCAGAGGC
ACTTGCTATGCCGACATTCAAATTGCATACATACATGTGACAGATCTCTG
TCAGCTTTCCCTTTGAGTGAGTCTGATTCATGAGCGTGGTTTAGCGCTGA
AGCTTTCCCTTCGAGTGAGTCTGATTCAAATTTGTGGTTTGGCGCTCACG
TGGTGGCAGCTGTGCACTGAAATCATACCCTGCACAACCTGGGAGAGCCT
GCGTTTCAAAGTCTACACGCAAGGGCCGACTTCTGCTGAAGCCAGCCCAT
TCGACCCTTTCAGGGTCTTCATCAGTGAGGCCATTTTCAGCTCCGCCATA
ACCCCACCTAAATCGGTCGAATGTCAAGTGGTAACGGAAGCTGAGCCCAT
CTCATTGTAGCGCTTCAACAGCTTTGGACTTGCTCACTTCAACATTTTAC
TTCAACATTATTTGCCGCGTGCGCTGCCGTGGTTGCATGCAGTCCATGAT
GGAGGACCCGGAGTTCAAGCGCGAAATCCAGCGACACATGGCGAGCTTGA
AAATGGTGAGCGCCAGACATCCAATAAATTCTTAAGCGCAGCCGCACGGC
GGCTGCTGATTGGTTTGCTGACTGCATGGCACAGGGGGTGCGGTGACAAA
CTGAGTAGGATCTTGGAACAACAGTTGAAGTTGAAGTTTCAAGCCCATCG
CACCGCCATGACTGACCTGGTACCACATACAGTACGTACATCGTCACGTC
TATTGCGGTGTGATGTCGACCGCATACGACTCCAACGCTCACGCGGCACA
CCACGGTGCACGCCGCACCAAGGCTGCCCTTGGTTCAAGATATTAGGATG
TGTGACGGGTGCGCAGCCCTAGGGTTAGGGTTGGCACGGGTTAGCAAGAT
GCGCGCCCTCTTGACACACCGGGCACGCGTGATGACGGCGCTCGTGCAGG
TGTCAGCGCGCATGCGACATCCACCTGCCCACAGTACGGTGCATGATCAC
GTACGTGTATCAAAGAGAACGCGCTCGATGGAGCTGCGGTGCCAAGTGGA
AGTTTTCCCACTGAATTCATGCATCGTCTGCAGGGACAATTGAGATCTCA
ATGCCGTAGGCTTGTTGTGCTTGCGCCGCTTACTTGCGGCATCATCGAGG
TGGTTGCATCACGCTTGCGCTTGTAGCACCACCATCGTTGTAGAAGTACT
TGAAGTACTCCATCTGTACGCCACGCAGCTGTTCGTATGTTGCATTTCAT
CTGTACCTCAGAATTCTCCTGTGCGCAGCATACGAACTCCTTTGCAACCT
CAATTTACTGTTTTCAAGAAGTGCCTCGAGCTGCTGCGCACCTGACGCAC
GTCACACAGCCCACTGACAGCACGCTAGGCAGGACTGATACATACGCCTT
GTTGAGATGGTGTCCCTACCCCCTCCAAGAAATAATGACCTGTATCGAAT
TGCGGCAGCCAACAACAGCTCACACGCCACGCACCGCTACCGACTCATCG
CAGGACCCTTCCTTCCAAGAGGCCATGCAGACTGCCCAGAGCAAGTTCCA
GGAGCTCATGCAGGTGAGCATCTTCCTGACTCCTAGAGCATTTACCCCCC
CCATGCCCTGCTTCCACTCGCGGGAGCCGCAGAACAGCTGTTGCCTGTGC
CACTGCGGCCTGCCAGGTGTCGCTGCAGCGGATTGCAGTGCGTGTAGGGT
ACACGAGTGCTCTTCAAGTATGCCCCCTATCGCGGGCGCGCCGCAATGCC
ACGTTATAATTAGGGAGGGTTAGGATTGAAAAATCTTTCCGTGCTTCGTC
AGGATGTGTTCCTTCTTCAGCCCGTGCTGCGCCCTGCACATGACCCATCA
GCCGGTCCGGTCAACGCAATGCGCACGAGCGCACGAGCAGAATCGCATAA
GTTGACCCCCCCGCGATTCCACTCCCCCCCCCCCGCCCCCCCAAACACAC
ACACAGGACCCGGAGAAGCTGCAGCAGCTGCAGGCGCAGGTGCAGGAGAA
CGGCCTCGCGGCGCTGGCTGCGGCACCCCCCGCAGACGCGGACGCAGCGG
GGGGCGCCCCCGTGTCAGCGCTCGCCGATCTGGGCATCGACGAGGAGTCA
ACGGCGTAACGGTTGTTCGTTCTCGCAGGCTTAGAGAGACGTATTCGAGT
TCAAGGTCGCACTCCCCTGTCTTTCTGCGGGCCTTCTGCACAGTGATCAT
GTAGCGGTGGATTCAGCAGACCCCCCTCTTCCCCCCCTCCCCCCCCATTC
TGTGACCCGCACGCGCCCTCATGGCTGAATTGGGGACGGTTTGGGAGGAG
CTGGGTGGATCCCGC
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Coding sequence (CDS) from alignment at Contig_86:395847..399461+

>mRNA_13694 ID=mRNA_13694|Name=jgi.p|Trimin1|95356|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=555bp|location=Sequence derived from alignment at Contig_86:395847..399461+ (Tribonema minus UTEX_B_3156 )
ATGCCGGCGAAGGGCAGCAAGAAGAAAACCAGCAAGTCGCCGACTCGCAA
GTCAAATGCGGCCAACAAGGAGGACTTGGACGGACTGGATGAGCTGCTGG
CGGACCCGGCGCTGATGAAGCAGTTTGAGGACAAGACGGTGCCGCCGGCC
AAGAAGAAGACAGGGGCGGAGAATGCGCGCATTGGCATGGAGGGCTTCTC
GCAGGCGACTAAGAACCCCGCCATGTTCGCGGAGGCCATGAGCATGCTCA
GCGACCCCAACGCCGTCAAGGAGGCGCAGTCCATGATGGAGGACCCGGAG
TTCAAGCGCGAAATCCAGCGACACATGGCGAGCTTGAAAATGGACCCTTC
CTTCCAAGAGGCCATGCAGACTGCCCAGAGCAAGTTCCAGGAGCTCATGC
AGGACCCGGAGAAGCTGCAGCAGCTGCAGGCGCAGGTGCAGGAGAACGGC
CTCGCGGCGCTGGCTGCGGCACCCCCCGCAGACGCGGACGCAGCGGGGGG
CGCCCCCGTGTCAGCGCTCGCCGATCTGGGCATCGACGAGGAGTCAACGG
CGTAA
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