mRNA_12096 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|171659
Unique NamemRNA_12096
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A836C8H0_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H0_9STRA)

HSP 1 Score: 503 bits (1294), Expect = 1.070e-179
Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
Query:    1 MPQAEETQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFSTLRT 774
            MPQAEETQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFSTLRT
Sbjct:    1 MPQAEETQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFSTLRT 258          
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: D7G6Y6_ECTSI (SpoU_methylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y6_ECTSI)

HSP 1 Score: 245 bits (626), Expect = 1.140e-76
Identity = 122/249 (49.00%), Postives = 169/249 (67.87%), Query Frame = 1
Query:   19 TQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSM--SLRRTEEGIAGF 759
            T+ L +   +++ERA++ L+ +   +RL R++DVL++RT     VFENP+NPNNVWA LRT+DSFGIQ+ H+++DP  Y K+ RL TM +AMGSQKWL+LHGHD   D    LK  GY+++ S L P AVP+  IDWS    AV  GNE+ G+S+ +    D TF IPMRGF  SFN+SVA SI+LA  +A   L+ GDL E ERR V + WL++ V   E +L+REGI +PQ +  + ++  + IAG+
Sbjct:  113 TRALVDQTASDLERAVDLLKGYLSEDRLSRMEDVLDQRTRSATLVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTYSKQARLKTMCTAMGSQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVP-TAVVLGNEERGISDSMRDMADATFVIPMRGFVRSFNMSVACSIILAHLSAVRALKHGDLPEDERREVAVTWLMQCVRGSEHILKREGIDIPQEIFGTDKQRPQNIAGY 360          
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A0G4EX06_VITBC (SpoU_methylase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EX06_VITBC)

HSP 1 Score: 198 bits (503), Expect = 1.390e-58
Identity = 108/240 (45.00%), Postives = 153/240 (63.75%), Query Frame = 1
Query:   55 ERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLL-TMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFSTLR 771
            E A+EAL     P+RL RLQ V+++RT H   VFE P+NPNNVWA LRT+DSFGIQ+  VI  P  Y ++  +   M+ A+GS +WLS+    SA++    LK RG R+  S L   +  + ++D S +   +  GNE+TG+SE +    D+TF++PMRGFAESFN+SVA ++  A  +  GGL+ GDL EGER AV   WL+R V   + VL+R+G+ +P+   LRRT + + G   +R
Sbjct:   89 ESAVEALSPLVSPDRLERLQTVISQRTNHCQFVFEAPTNPNNVWACLRTLDSFGIQHTSVIRRPGGYDRQRDINGNMNVALGSSQWLSMQEFQSASEAIGQLKDRGVRVYASDLQEDSTALTSLDVS-QPFTIVLGNERTGISEEMRGLADETFFVPMRGFAESFNLSVACAVTCAYLSQMGGLKWGDLSEGERAAVMTEWLMRCVPGSQQVLERKGLRVPER--LRRTRQRLLGCEGVR 325          
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A8J2SJW7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJW7_9STRA)

HSP 1 Score: 177 bits (448), Expect = 1.850e-50
Identity = 105/257 (40.86%), Postives = 143/257 (55.64%), Query Frame = 1
Query:   46 AEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVI-----------------ADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFST 765
            A + RA+  L  +   ER    Q V+ +RT HL   FE PSNP+NVWA LRTID+FG Q+VH++                 ADP   ++ GR   M+SAMG+QKWLSL  H  A      LK+ G  +  + L PGAV    +DW++ + A+ FGNE+ G+S+ L    D    +PMRG AES N+SV++   LA   A G L   DL   ER  + LRW L +V AG  +L+REG+ L Q +   +T   + GF+T
Sbjct:   69 AVVRRAVSILAPYVSDERRDTFQRVVQQRTRHLSVAFERPSNPSNVWACLRTIDAFGCQDVHIVEDSLEEAAKRAAARGVHADPTQRMR-GRKKRMTSAMGAQKWLSLEAHADAQALVSKLKSEGRIVAATDLSPGAVDFSEVDWASGKHALVFGNEEVGISDELRELADVRVRLPMRGLAESLNLSVSVGAALAHVDAKGALVP-DLTVEERDLLLLRWSLLSVRAGRELLRREGVELDQGVL--KTRASVLGFTT 321          
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S2A9L6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9L6_TRICV)

HSP 1 Score: 179 bits (453), Expect = 2.920e-50
Identity = 105/237 (44.30%), Postives = 139/237 (58.65%), Query Frame = 1
Query:   58 RAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLT-----MSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAG-----GGLRGGDLGEGERRAVYLRWLLRTVAA---GESVLQREGIALPQSMSL 729
            RA + L  F   +R  R+  VL +RT     +FENPSNP+NVWA LRTIDSFG+QNV ++ D  +Y  KG++       M +AMGS KWLSL  H S  +  RA+KA GY+I  S L P +  +  +DW    V V  GNE+ G+S+ +    D TF +PM GFAESFN+SVA SI LA  +A      G LR GDL   E   + L+ LL ++     G  +L++EGI LP+   L
Sbjct:  174 RATDILRPFVGDDRYERIDSVLRQRTKRTKFLFENPSNPSNVWACLRTIDSFGVQNVDLVVDSGMY--KGKMAVQQKRGMRTAMGSAKWLSLRNHPSTEEAVRAIKAEGYKIYASDLNPNSQDVREVDWDVGPVCVVMGNEERGISDEMREMADVTFTLPMVGFAESFNLSVATSITLAHMSAKSKDGRGALRPGDLDPHELACLRLKGLLGSLPKRKLGPILLKQEGIVLPEIFRL 408          
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S1FT46_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FT46_9STRA)

HSP 1 Score: 171 bits (432), Expect = 1.640e-47
Identity = 101/225 (44.89%), Postives = 135/225 (60.00%), Query Frame = 1
Query:   94 ERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYI-------KKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAG-------GGLRGGDLGEGERRAVYLRWLLRTVAA---GESVLQREGIALPQ 717
            +R  R+++VL +RT+    +FENP+NP+NVWA LRTIDSFGIQNV V+ D   Y+       KKG    M +AMGS +WLSL    S  D  R LK RGY+I  S L P +  +  ++W    V V  GNE++G+SE + A  D+TF +PM GFAESFN+S A +I LA  +A        G LR GDL      A+ L+W+L ++     G  VL+R GI LP+
Sbjct:  147 KRRERIEEVLGRRTSRSRFLFENPANPSNVWACLRTIDSFGIQNVDVVVDSSTYVGASAIAQKKG----MRTAMGSAQWLSLRSFPSTVDAVRDLKDRGYKIYASDLNPDSQDVRELNWDEGPVCVVMGNEESGISEEMRAVADKTFTLPMVGFAESFNLSAATAITLAHMSARSDESRGTGPLRPGDLDGRTVDALRLKWMLGSLPKRKMGAMVLRRHGIELPE 367          
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S0Y847_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y847_9STRA)

HSP 1 Score: 169 bits (429), Expect = 5.750e-47
Identity = 100/243 (41.15%), Postives = 142/243 (58.44%), Query Frame = 1
Query:   58 RAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLT---MSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSA--RRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAG-------------GGLRGGDLGEGERRAVYLRWLLRTVAA---GESVLQREGIALPQSM 723
            +AIE LE +   +RL R+  VL +RT H   +FENPSNP+NVWA LRTIDSFG+QNV VI D   Y  K  +     M +AMGS +WL+L  H +  +    ++ +G++I  S L P +  +  IDW A  R + +  GNE  G+S+ +    D+TF +PM GFAESFN+SVA SI LA  +A              G LR GDL E E   +YL+ LL ++      +++L++ G+ LP ++
Sbjct:  138 KAIETLEPWINGDRLERVSGVLKQRTKHSKFLFENPSNPSNVWACLRTIDSFGMQNVDVIIDSGRYAGKQAISQKKGMRTAMGSAQWLTLTNHHTTKEAIDQIRDQGFKIYASDLNPNSKDVRDIDWDADDRPICIVMGNEDRGISQEMREMADETFTLPMSGFAESFNLSVATSITLAHMSAKSYNCQKDPDGKRKGPLRPGDLSEHEYNCLYLKGLLHSLPQKRMSKALLKKAGVELPDAL 380          
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S3PUK7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUK7_9STRA)

HSP 1 Score: 164 bits (416), Expect = 5.140e-45
Identity = 95/225 (42.22%), Postives = 134/225 (59.56%), Query Frame = 1
Query:   73 LERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLT---MSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAA-----GGGLRGGDLGEGERRAVYLRWLLRTVA---AGESVLQREGIALP 714
            LE +   +RL ++  VL +RT     +FENPSNP+NVWA LRTIDSFG+QNV  I D  +Y  K  +     M +AMGS +WLSL  H S A+  + +K +GY+I  + L   +  +  +DW    + V  GNE+ G+S+ +    D+TF +PM GFAESFN+SVA SI LA  +A      G LR GDL E E   +YL+ LL ++     G+ +L++  I +P
Sbjct:  155 LEPWINEDRLQKVARVLKQRTKRSKFLFENPSNPSNVWACLRTIDSFGVQNVDCIIDSGMYAGKQAIHQKKGMRTAMGSAQWLSLKNHLSTAEAIKEIKNQGYKIYATDLNSNSKDVRDLDWETSPICVVMGNEERGISQEMRDAADETFILPMCGFAESFNLSVATSITLAHMSAQSFGENGPLRKGDLDEHEYNCLYLKGLLNSLPQKRTGKLLLKQNNIIIP 379          
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S1Y6X6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6X6_9STRA)

HSP 1 Score: 164 bits (415), Expect = 6.310e-45
Identity = 94/238 (39.50%), Postives = 139/238 (58.40%), Query Frame = 1
Query:   58 RAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMS---SAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSA---RRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGG-------LRGGDLGEGERRAVYLRWLLRTVA---AGESVLQREGIALPQSM 723
            RA E L  F + +R  R++ VL +RT +   +FENPSNP+NVWA LRTIDSFG+Q+V ++     Y  KG +   S   +AMGS +WLSL  H + A     LK+ GY++  S L P +  +  +DWSA   R + +  GNE  G+S+ +    D+TF +PM GFAESFN+SVA +I LA  +A  G       LR GD+ E E   + L+ ++ ++       ++L+R  + LP ++
Sbjct:  140 RATETLRPFIREDRAERMESVLKQRTKNCRFLFENPSNPSNVWACLRTIDSFGVQDVDLVVQSGQYEGKGAIAQKSGLRTAMGSAQWLSLTNHPTTASAVAKLKSEGYKLYASDLNPNSKDVRDVDWSADGDRPICIVMGNEGRGISQEMRELADETFTLPMCGFAESFNLSVATAITLAHLSAKSGHENQEGPLRPGDMDEHEYNRLLLKGIIFSLPQRRTARALLKRNNVVLPNAL 377          
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: F0YD02_AURAN (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YD02_AURAN)

HSP 1 Score: 157 bits (396), Expect = 1.280e-44
Identity = 79/166 (47.59%), Postives = 106/166 (63.86%), Query Frame = 1
Query:   82 FTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLA 579
            +  PER      V  +RTAHL   FE PSNP N WA LRTID+FG+Q+V V+ D      + R   M +AMG+QKWL+L  HD+  D   AL A GY++  + LGPG+ P+  +DW+A   A+ FGNE+TG+SE L A+ D   ++PMRG AES N+SV++   LA
Sbjct:    4 YVSPERKAAFVKVAGQRTAHLRVAFERPSNPANAWACLRTIDAFGVQDVDVVKDT----LEAR---MHAAMGAQKWLTLREHDAPGDLVDALHAAGYKVAATDLGPGSRPIGDVDWAAEPYALVFGNEETGISEDLRARADVRVHLPMRGLAESLNLSVSVGACLA 162          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8H0_9STRA1.070e-179100.00Alpha/beta knot methyltransferase n=1 Tax=Tribonem... [more]
D7G6Y6_ECTSI1.140e-7649.00SpoU_methylase domain-containing protein n=2 Tax=E... [more]
A0A0G4EX06_VITBC1.390e-5845.00SpoU_methylase domain-containing protein n=2 Tax=V... [more]
A0A8J2SJW7_9STRA1.850e-5040.86Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2A9L6_TRICV2.920e-5044.30Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S1FT46_9STRA1.640e-4744.89Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S0Y847_9STRA5.750e-4741.15Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S3PUK7_9STRA5.140e-4542.22Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S1Y6X6_9STRA6.310e-4539.50Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
F0YD02_AURAN1.280e-4447.59SpoU_methylase domain-containing protein (Fragment... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_84contigContig_84:87485..89748 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|171659|e_gw1.84.102.1
BRITEko00000,ko01000,ko03016
KEGG koko:K00556
EC2.1.1.34
DescriptionrRNA methyltransferase
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0566@1|root,KOG0838@2759|Eukaryota
Evalue1.88e-77
Seed ortholog2880.D7G6Y6
Hectar predicted targeting categoryother localisation
TranscriptId171981
TrackFilteredModels1
ProteinId171659
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171659gene_12096Tribonema minus UTEX_B_3156 geneContig_84 87485..89748 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12096_1exon_12096_1Tribonema minus UTEX_B_3156 exonContig_84 87485..87619 +
exon_12096_2exon_12096_2Tribonema minus UTEX_B_3156 exonContig_84 87922..88094 +
exon_12096_3exon_12096_3Tribonema minus UTEX_B_3156 exonContig_84 89280..89748 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12096CDS_12096Tribonema minus UTEX_B_3156 CDSContig_84 87485..87619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|171659Trimin1|171659|e_gw1.84.102.1Tribonema minus UTEX_B_3156 polypeptideContig_84 87485..89748 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12096 ID=mRNA_12096|Name=jgi.p|Trimin1|171659|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_84:87485..89748+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTCAGGCGGAGGAAACGCAGCTGCTGGCGGAGATGCCAGTTGCAGA
AATGGAGCGGGCCATTGAGGCTCTGGAGCGATTCACGCAGCCAGAGCGGC
TGGGGAGGCTGCAGGATGTACTCAATAAACGAACAGCGCACCTGTGCACA
GTGTTTGAGAATCCGTCGAACCCAAACAACGTGTGGGCGGCGCTGCGGAC
CATCGACAGCTTTGGCATCCAGAACGTGCATGTTATCGCTGATCCGGAGC
TTTACATCAAGAAGGGAAGGCTCCTCACCATGAGCTCTGCAATGGGAAGC
CAGAAATGGCTGTCCCTGCACGGGCACGACTCCGCGGCGGACTGCGCGCG
CGCCCTCAAAGCGCGCGGCTACCGCATCATCGGCAGCAGTCTCGGCCCCG
GCGCGGTGCCCATGGACGCGATCGACTGGTCGGCGCGGCGCGTCGCCGTC
GCCTTCGGCAACGAAAAAACGGGACTCAGCGAGGGCCTGCTCGCGCAGTG
CGACCAGACCTTCTACATACCCATGCGCGGCTTCGCCGAGTCGTTCAACG
TGTCGGTCGCGCTGAGCATCGTGCTGGCGAGCGCTGCCGCGGGGGGGGGG
CTGCGCGGGGGGGACCTGGGGGAGGGGGAGCGGCGCGCCGTGTACCTGCG
GTGGCTGCTGCGCACCGTCGCGGCGGGGGAGAGCGTGCTGCAGCGCGAGG
GCATCGCGCTGCCGCAGAGCATGTCGCTGCGGCGCACGGAGGAGGGGATC
GCGGGGTTCAGCACGCTGCGAACATGA
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protein sequence of jgi.p|Trimin1|171659

>Trimin1|171659|e_gw1.84.102.1 ID=Trimin1|171659|e_gw1.84.102.1|Name=jgi.p|Trimin1|171659|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp
MPQAEETQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCT
VFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGS
QKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAV
AFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGG
LRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGI
AGFSTLRT*
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mRNA from alignment at Contig_84:87485..89748+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12096 ID=mRNA_12096|Name=jgi.p|Trimin1|171659|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2264bp|location=Sequence derived from alignment at Contig_84:87485..89748+ (Tribonema minus UTEX_B_3156 )
ATGCCTCAGGCGGAGGAAACGCAGCTGCTGGCGGAGATGCCAGTTGCAGA AATGGAGCGGGCCATTGAGGCTCTGGAGCGATTCACGCAGCCAGAGCGGC TGGGGAGGCTGCAGGATGTACTCAATAAACGAACAGTAAGTGTCCGGCCC ACATTTGAAGCCTCAAGCAGGAATGCTCTGTGGTGCCTGTTTGTTGCTGC TTTGACTTGTTGTGCATGAGGACTTGACTGCCACGCGGGTGAGCGACAGC TGGTGGCAAGCGTATTCGAGCTCTTGACAAACCAGTGACTGCGCATGTAG CGAGCGGATCTGCATGCCCAAGGGCAGATTGCGCCACACTCGTGCTGCAT GTCGTTGAGGCTCACACGGTGTGAGCCACAACTTTGATACTAAAGCACAA TGTGTTGAAGTACCGTGCTGCCTCTTGTCGCGTGCAGGCGCACCTGTGCA CAGTGTTTGAGAATCCGTCGAACCCAAACAACGTGTGGGCGGCGCTGCGG ACCATCGACAGCTTTGGCATCCAGAACGTGCATGTTATCGCTGATCCGGA GCTTTACATCAAGAAGGGAAGGCTCCTCACCATGAGCTCTGCAATGGGAA GCCAGAAATGGTGAGCAGACGCCAACAGAGTGGGCCACCGGTTGTAACCT TGCACATGCAGCGTTACAACAACATGAGAAGCTTGCACAGCACTTGGGCG CAGTCTTGATGCGTCGCCTTCTTGACCACGTTGCCTTGCTGAGCACTGCT GTGGCATTGCTCAGCTTGGCGGCCCGTACACCATGTAACGAAGGCACGCC TCGCATGTGAGCTTACGGCAGCACAGCAGGGCGTGTAGCATCGCACGTGT GCAGCCGCGGGCTTGACGCGGCTGCAGTGTTACCGCTGGTGACTCTGGGC AGCATCAGTGGAGCAATGCGCTCCGAGTACATAGGCGGCGACGCACTGCA ATATGCTCACCGCCTGCTGATGATGTTTCAGAGGCAGAGCGCTCAGAATC GTTTACATGAATGCTGTGCTTGTATAGCTCTTGCAGGCTTGGAGCTCCCC AGCCATCATGTCGCATTCTTCCACGCGACACCGCTGCTCACTGCACTGAC TGCACACATTTGTGATGTTTAATGACTTGCCTACTTCGGCCTGTCACAGC GCACGCCCGACCGCGCACACGCGCAGCTGTACAAATGTTGAACCAGCTGC GCGCACGCGTGCTGCCGCCCGCTCGTTCTACTGCGAAACCCGCCTATATG CGTACTGCACTCATTGCACGCCTTGATGTGCATGCGTGCTGTCCAAGCTC GCCCCGCGTCTGACCACCCTAGGGTTAGGTTAGGGTTATAATACGGTTAG AGTTAGAGTTAGATTAGGGTTAATTCAACCCCCAGCCCTTCCCCTTGACC GCGCGCGCCCAGGCTGTCCCTACGCAGGCATGCCTCCTCGGGGCACTGCG CCCGTATGGTGTGCGGCTACCGCATCGTCGGCAGCAGCTTCGGCCCCGGT TGCATGTTCCGTGGCTGCACACACGCGCGCTGCGGAGGACCTTGACGCTG ACACCGCGCTTTTCTGACCAAATGCATGTGTTCTGCGCTAGCTGCGTGCC GCCCAGTGCCTTCCCTCAGGTCACCTACCCCACTCCCTGTCAGCATTTGT ACTAATTCGCACATGACCACTGCGAACATCGGTGAAACATGCCACCGAGG CCTCGCATCTTCAACTTGAGGTGGCCATCACCACGCGTCTGAACCCCCTT AAAACCCAGCTTCAACCCCACCCCCCCTACCGCGCGCGCGCCCAGGCTGT CCCTGCACGGGCACGACTCCGCGGCGGACTGCGCGCGCGCCCTCAAAGCG CGCGGCTACCGCATCATCGGCAGCAGTCTCGGCCCCGGCGCGGTGCCCAT GGACGCGATCGACTGGTCGGCGCGGCGCGTCGCCGTCGCCTTCGGCAACG AAAAAACGGGACTCAGCGAGGGCCTGCTCGCGCAGTGCGACCAGACCTTC TACATACCCATGCGCGGCTTCGCCGAGTCGTTCAACGTGTCGGTCGCGCT GAGCATCGTGCTGGCGAGCGCTGCCGCGGGGGGGGGGCTGCGCGGGGGGG ACCTGGGGGAGGGGGAGCGGCGCGCCGTGTACCTGCGGTGGCTGCTGCGC ACCGTCGCGGCGGGGGAGAGCGTGCTGCAGCGCGAGGGCATCGCGCTGCC GCAGAGCATGTCGCTGCGGCGCACGGAGGAGGGGATCGCGGGGTTCAGCA CGCTGCGAACATGA
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Coding sequence (CDS) from alignment at Contig_84:87485..89748+

>mRNA_12096 ID=mRNA_12096|Name=jgi.p|Trimin1|171659|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_84:87485..89748+ (Tribonema minus UTEX_B_3156 )
ATGCCTCAGGCGGAGGAAACGCAGCTGCTGGCGGAGATGCCAGTTGCAGA
AATGGAGCGGGCCATTGAGGCTCTGGAGCGATTCACGCAGCCAGAGCGGC
TGGGGAGGCTGCAGGATGTACTCAATAAACGAACAGCGCACCTGTGCACA
GTGTTTGAGAATCCGTCGAACCCAAACAACGTGTGGGCGGCGCTGCGGAC
CATCGACAGCTTTGGCATCCAGAACGTGCATGTTATCGCTGATCCGGAGC
TTTACATCAAGAAGGGAAGGCTCCTCACCATGAGCTCTGCAATGGGAAGC
CAGAAATGGCTGTCCCTGCACGGGCACGACTCCGCGGCGGACTGCGCGCG
CGCCCTCAAAGCGCGCGGCTACCGCATCATCGGCAGCAGTCTCGGCCCCG
GCGCGGTGCCCATGGACGCGATCGACTGGTCGGCGCGGCGCGTCGCCGTC
GCCTTCGGCAACGAAAAAACGGGACTCAGCGAGGGCCTGCTCGCGCAGTG
CGACCAGACCTTCTACATACCCATGCGCGGCTTCGCCGAGTCGTTCAACG
TGTCGGTCGCGCTGAGCATCGTGCTGGCGAGCGCTGCCGCGGGGGGGGGG
CTGCGCGGGGGGGACCTGGGGGAGGGGGAGCGGCGCGCCGTGTACCTGCG
GTGGCTGCTGCGCACCGTCGCGGCGGGGGAGAGCGTGCTGCAGCGCGAGG
GCATCGCGCTGCCGCAGAGCATGTCGCTGCGGCGCACGGAGGAGGGGATC
GCGGGGTTCAGCACGCTGCGAACATGA
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