mRNA_12096 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A836C8H0_9STRA (Alpha/beta knot methyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8H0_9STRA) HSP 1 Score: 503 bits (1294), Expect = 1.070e-179 Identity = 258/258 (100.00%), Postives = 258/258 (100.00%), Query Frame = 1
Query: 1 MPQAEETQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFSTLRT 774
MPQAEETQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFSTLRT
Sbjct: 1 MPQAEETQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFSTLRT 258
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: D7G6Y6_ECTSI (SpoU_methylase domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6Y6_ECTSI) HSP 1 Score: 245 bits (626), Expect = 1.140e-76 Identity = 122/249 (49.00%), Postives = 169/249 (67.87%), Query Frame = 1
Query: 19 TQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSM--SLRRTEEGIAGF 759
T+ L + +++ERA++ L+ + +RL R++DVL++RT VFENP+NPNNVWA LRT+DSFGIQ+ H+++DP Y K+ RL TM +AMGSQKWL+LHGHD D LK GY+++ S L P AVP+ IDWS AV GNE+ G+S+ + D TF IPMRGF SFN+SVA SI+LA +A L+ GDL E ERR V + WL++ V E +L+REGI +PQ + + ++ + IAG+
Sbjct: 113 TRALVDQTASDLERAVDLLKGYLSEDRLSRMEDVLDQRTRSATLVFENPANPNNVWACLRTLDSFGIQHAHIVSDPSTYSKQARLKTMCTAMGSQKWLTLHGHDRPEDAVAKLKTDGYQVVASDLSPSAVPISEIDWSVP-TAVVLGNEERGISDSMRDMADATFVIPMRGFVRSFNMSVACSIILAHLSAVRALKHGDLPEDERREVAVTWLMQCVRGSEHILKREGIDIPQEIFGTDKQRPQNIAGY 360
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A0G4EX06_VITBC (SpoU_methylase domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EX06_VITBC) HSP 1 Score: 198 bits (503), Expect = 1.390e-58 Identity = 108/240 (45.00%), Postives = 153/240 (63.75%), Query Frame = 1
Query: 55 ERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLL-TMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFSTLR 771
E A+EAL P+RL RLQ V+++RT H VFE P+NPNNVWA LRT+DSFGIQ+ VI P Y ++ + M+ A+GS +WLS+ SA++ LK RG R+ S L + + ++D S + + GNE+TG+SE + D+TF++PMRGFAESFN+SVA ++ A + GGL+ GDL EGER AV WL+R V + VL+R+G+ +P+ LRRT + + G +R
Sbjct: 89 ESAVEALSPLVSPDRLERLQTVISQRTNHCQFVFEAPTNPNNVWACLRTLDSFGIQHTSVIRRPGGYDRQRDINGNMNVALGSSQWLSMQEFQSASEAIGQLKDRGVRVYASDLQEDSTALTSLDVS-QPFTIVLGNERTGISEEMRGLADETFFVPMRGFAESFNLSVACAVTCAYLSQMGGLKWGDLSEGERAAVMTEWLMRCVPGSQQVLERKGLRVPER--LRRTRQRLLGCEGVR 325
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A8J2SJW7_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SJW7_9STRA) HSP 1 Score: 177 bits (448), Expect = 1.850e-50 Identity = 105/257 (40.86%), Postives = 143/257 (55.64%), Query Frame = 1
Query: 46 AEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVI-----------------ADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGGLRGGDLGEGERRAVYLRWLLRTVAAGESVLQREGIALPQSMSLRRTEEGIAGFST 765
A + RA+ L + ER Q V+ +RT HL FE PSNP+NVWA LRTID+FG Q+VH++ ADP ++ GR M+SAMG+QKWLSL H A LK+ G + + L PGAV +DW++ + A+ FGNE+ G+S+ L D +PMRG AES N+SV++ LA A G L DL ER + LRW L +V AG +L+REG+ L Q + +T + GF+T
Sbjct: 69 AVVRRAVSILAPYVSDERRDTFQRVVQQRTRHLSVAFERPSNPSNVWACLRTIDAFGCQDVHIVEDSLEEAAKRAAARGVHADPTQRMR-GRKKRMTSAMGAQKWLSLEAHADAQALVSKLKSEGRIVAATDLSPGAVDFSEVDWASGKHALVFGNEEVGISDELRELADVRVRLPMRGLAESLNLSVSVGAALAHVDAKGALVP-DLTVEERDLLLLRWSLLSVRAGRELLRREGVELDQGVL--KTRASVLGFTT 321
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S2A9L6_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A9L6_TRICV) HSP 1 Score: 179 bits (453), Expect = 2.920e-50 Identity = 105/237 (44.30%), Postives = 139/237 (58.65%), Query Frame = 1
Query: 58 RAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLT-----MSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAG-----GGLRGGDLGEGERRAVYLRWLLRTVAA---GESVLQREGIALPQSMSL 729
RA + L F +R R+ VL +RT +FENPSNP+NVWA LRTIDSFG+QNV ++ D +Y KG++ M +AMGS KWLSL H S + RA+KA GY+I S L P + + +DW V V GNE+ G+S+ + D TF +PM GFAESFN+SVA SI LA +A G LR GDL E + L+ LL ++ G +L++EGI LP+ L
Sbjct: 174 RATDILRPFVGDDRYERIDSVLRQRTKRTKFLFENPSNPSNVWACLRTIDSFGVQNVDLVVDSGMY--KGKMAVQQKRGMRTAMGSAKWLSLRNHPSTEEAVRAIKAEGYKIYASDLNPNSQDVREVDWDVGPVCVVMGNEERGISDEMREMADVTFTLPMVGFAESFNLSVATSITLAHMSAKSKDGRGALRPGDLDPHELACLRLKGLLGSLPKRKLGPILLKQEGIVLPEIFRL 408
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S1FT46_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FT46_9STRA) HSP 1 Score: 171 bits (432), Expect = 1.640e-47 Identity = 101/225 (44.89%), Postives = 135/225 (60.00%), Query Frame = 1
Query: 94 ERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYI-------KKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAG-------GGLRGGDLGEGERRAVYLRWLLRTVAA---GESVLQREGIALPQ 717
+R R+++VL +RT+ +FENP+NP+NVWA LRTIDSFGIQNV V+ D Y+ KKG M +AMGS +WLSL S D R LK RGY+I S L P + + ++W V V GNE++G+SE + A D+TF +PM GFAESFN+S A +I LA +A G LR GDL A+ L+W+L ++ G VL+R GI LP+
Sbjct: 147 KRRERIEEVLGRRTSRSRFLFENPANPSNVWACLRTIDSFGIQNVDVVVDSSTYVGASAIAQKKG----MRTAMGSAQWLSLRSFPSTVDAVRDLKDRGYKIYASDLNPDSQDVRELNWDEGPVCVVMGNEESGISEEMRAVADKTFTLPMVGFAESFNLSAATAITLAHMSARSDESRGTGPLRPGDLDGRTVDALRLKWMLGSLPKRKMGAMVLRRHGIELPE 367
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S0Y847_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y847_9STRA) HSP 1 Score: 169 bits (429), Expect = 5.750e-47 Identity = 100/243 (41.15%), Postives = 142/243 (58.44%), Query Frame = 1
Query: 58 RAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLT---MSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSA--RRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAG-------------GGLRGGDLGEGERRAVYLRWLLRTVAA---GESVLQREGIALPQSM 723
+AIE LE + +RL R+ VL +RT H +FENPSNP+NVWA LRTIDSFG+QNV VI D Y K + M +AMGS +WL+L H + + ++ +G++I S L P + + IDW A R + + GNE G+S+ + D+TF +PM GFAESFN+SVA SI LA +A G LR GDL E E +YL+ LL ++ +++L++ G+ LP ++
Sbjct: 138 KAIETLEPWINGDRLERVSGVLKQRTKHSKFLFENPSNPSNVWACLRTIDSFGMQNVDVIIDSGRYAGKQAISQKKGMRTAMGSAQWLTLTNHHTTKEAIDQIRDQGFKIYASDLNPNSKDVRDIDWDADDRPICIVMGNEDRGISQEMREMADETFTLPMSGFAESFNLSVATSITLAHMSAKSYNCQKDPDGKRKGPLRPGDLSEHEYNCLYLKGLLHSLPQKRMSKALLKKAGVELPDAL 380
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S3PUK7_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PUK7_9STRA) HSP 1 Score: 164 bits (416), Expect = 5.140e-45 Identity = 95/225 (42.22%), Postives = 134/225 (59.56%), Query Frame = 1
Query: 73 LERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLT---MSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAA-----GGGLRGGDLGEGERRAVYLRWLLRTVA---AGESVLQREGIALP 714
LE + +RL ++ VL +RT +FENPSNP+NVWA LRTIDSFG+QNV I D +Y K + M +AMGS +WLSL H S A+ + +K +GY+I + L + + +DW + V GNE+ G+S+ + D+TF +PM GFAESFN+SVA SI LA +A G LR GDL E E +YL+ LL ++ G+ +L++ I +P
Sbjct: 155 LEPWINEDRLQKVARVLKQRTKRSKFLFENPSNPSNVWACLRTIDSFGVQNVDCIIDSGMYAGKQAIHQKKGMRTAMGSAQWLSLKNHLSTAEAIKEIKNQGYKIYATDLNSNSKDVRDLDWETSPICVVMGNEERGISQEMRDAADETFILPMCGFAESFNLSVATSITLAHMSAQSFGENGPLRKGDLDEHEYNCLYLKGLLNSLPQKRTGKLLLKQNNIIIP 379
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: A0A7S1Y6X6_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1Y6X6_9STRA) HSP 1 Score: 164 bits (415), Expect = 6.310e-45 Identity = 94/238 (39.50%), Postives = 139/238 (58.40%), Query Frame = 1
Query: 58 RAIEALERFTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMS---SAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSA---RRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLASAAAGGG-------LRGGDLGEGERRAVYLRWLLRTVA---AGESVLQREGIALPQSM 723
RA E L F + +R R++ VL +RT + +FENPSNP+NVWA LRTIDSFG+Q+V ++ Y KG + S +AMGS +WLSL H + A LK+ GY++ S L P + + +DWSA R + + GNE G+S+ + D+TF +PM GFAESFN+SVA +I LA +A G LR GD+ E E + L+ ++ ++ ++L+R + LP ++
Sbjct: 140 RATETLRPFIREDRAERMESVLKQRTKNCRFLFENPSNPSNVWACLRTIDSFGVQDVDLVVQSGQYEGKGAIAQKSGLRTAMGSAQWLSLTNHPTTASAVAKLKSEGYKLYASDLNPNSKDVRDVDWSADGDRPICIVMGNEGRGISQEMRELADETFTLPMCGFAESFNLSVATAITLAHLSAKSGHENQEGPLRPGDMDEHEYNRLLLKGIIFSLPQRRTARALLKRNNVVLPNAL 377
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Match: F0YD02_AURAN (SpoU_methylase domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YD02_AURAN) HSP 1 Score: 157 bits (396), Expect = 1.280e-44 Identity = 79/166 (47.59%), Postives = 106/166 (63.86%), Query Frame = 1
Query: 82 FTQPERLGRLQDVLNKRTAHLCTVFENPSNPNNVWAALRTIDSFGIQNVHVIADPELYIKKGRLLTMSSAMGSQKWLSLHGHDSAADCARALKARGYRIIGSSLGPGAVPMDAIDWSARRVAVAFGNEKTGLSEGLLAQCDQTFYIPMRGFAESFNVSVALSIVLA 579
+ PER V +RTAHL FE PSNP N WA LRTID+FG+Q+V V+ D + R M +AMG+QKWL+L HD+ D AL A GY++ + LGPG+ P+ +DW+A A+ FGNE+TG+SE L A+ D ++PMRG AES N+SV++ LA
Sbjct: 4 YVSPERKAAFVKVAGQRTAHLRVAFERPSNPANAWACLRTIDAFGVQDVDVVKDT----LEAR---MHAAMGAQKWLTLREHDAPGDLVDALHAAGYKVAATDLGPGSRPIGDVDWAAEPYALVFGNEETGISEDLRARADVRVHLPMRGLAESLNLSVSVGACLA 162 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|171659 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12096 ID=mRNA_12096|Name=jgi.p|Trimin1|171659|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=777bp|location=Sequence derived from alignment at Contig_84:87485..89748+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCCTCAGGCGGAGGAAACGCAGCTGCTGGCGGAGATGCCAGTTGCAGAback to top protein sequence of jgi.p|Trimin1|171659 >Trimin1|171659|e_gw1.84.102.1 ID=Trimin1|171659|e_gw1.84.102.1|Name=jgi.p|Trimin1|171659|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=259bp MPQAEETQLLAEMPVAEMERAIEALERFTQPERLGRLQDVLNKRTAHLCTback to top mRNA from alignment at Contig_84:87485..89748+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12096 ID=mRNA_12096|Name=jgi.p|Trimin1|171659|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2264bp|location=Sequence derived from alignment at Contig_84:87485..89748+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_84:87485..89748+ >mRNA_12096 ID=mRNA_12096|Name=jgi.p|Trimin1|171659|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=777bp|location=Sequence derived from alignment at Contig_84:87485..89748+ (Tribonema minus UTEX_B_3156 )back to top |