mRNA_9764 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351134
Unique NamemRNA_9764
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: A0A836C8P4_9STRA (Mitochondrial ribosomal death-associated protein 3-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P4_9STRA)

HSP 1 Score: 1119 bits (2894), Expect = 0.000e+0
Identity = 570/570 (100.00%), Postives = 570/570 (100.00%), Query Frame = 1
Query:    1 MRHIVAIAGRRARARGAHTWIDHICSLQSLTIQPVAHALRQTACLSSLGGGGGRRPRFGGIGGQYGAGGSRAGRPGYDSTSRTPGDPDRVMDFMDDDFADIDDLDYGLVPDGAVAVPGGEESFFSGLKSKSARSRENRMQEMSGGVGRAEDAVGAAATNQAPAVQYVTSSDPDDVPRKQPTYFIIPDADLKARFPEGVAGYLRHEFDYAALRDRRAIMHRAPARRIIGHMKRAAAGDPSAQRAFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHYRRDVDHLAAFDIDDEDYEDKVREARLHVQLERIPGEKLTVVAPFMPFRPPPDGGLCDPAPFTPRRGAVIAAETLHYPPVRKIKGKSVRWPYFDDFVGTSADPWTVETAPYSAEEFAAALGHYAACDMYDERALGDADVARVRIKTMLNPKLIFHKFSFKPYG 1710
            MRHIVAIAGRRARARGAHTWIDHICSLQSLTIQPVAHALRQTACLSSLGGGGGRRPRFGGIGGQYGAGGSRAGRPGYDSTSRTPGDPDRVMDFMDDDFADIDDLDYGLVPDGAVAVPGGEESFFSGLKSKSARSRENRMQEMSGGVGRAEDAVGAAATNQAPAVQYVTSSDPDDVPRKQPTYFIIPDADLKARFPEGVAGYLRHEFDYAALRDRRAIMHRAPARRIIGHMKRAAAGDPSAQRAFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHYRRDVDHLAAFDIDDEDYEDKVREARLHVQLERIPGEKLTVVAPFMPFRPPPDGGLCDPAPFTPRRGAVIAAETLHYPPVRKIKGKSVRWPYFDDFVGTSADPWTVETAPYSAEEFAAALGHYAACDMYDERALGDADVARVRIKTMLNPKLIFHKFSFKPYG
Sbjct:    1 MRHIVAIAGRRARARGAHTWIDHICSLQSLTIQPVAHALRQTACLSSLGGGGGRRPRFGGIGGQYGAGGSRAGRPGYDSTSRTPGDPDRVMDFMDDDFADIDDLDYGLVPDGAVAVPGGEESFFSGLKSKSARSRENRMQEMSGGVGRAEDAVGAAATNQAPAVQYVTSSDPDDVPRKQPTYFIIPDADLKARFPEGVAGYLRHEFDYAALRDRRAIMHRAPARRIIGHMKRAAAGDPSAQRAFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHYRRDVDHLAAFDIDDEDYEDKVREARLHVQLERIPGEKLTVVAPFMPFRPPPDGGLCDPAPFTPRRGAVIAAETLHYPPVRKIKGKSVRWPYFDDFVGTSADPWTVETAPYSAEEFAAALGHYAACDMYDERALGDADVARVRIKTMLNPKLIFHKFSFKPYG 570          
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: D8LJR3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR3_ECTSI)

HSP 1 Score: 160 bits (405), Expect = 2.200e-38
Identity = 112/338 (33.14%), Postives = 169/338 (50.00%), Query Frame = 1
Query:  721 QRAFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHY---RRDVDHLAA--------------FDIDDEDYEDKVREARLHVQLERIPGEKLTVVAPFMPFRPPPDGGLCDPAPFTPRRGAVIAAETLHYPPVRKIKGKSVRWPYFDDFVGTSADPWTVETAPYSAEEFAAALGHYAACDMYDERALGDADVARVRIKTMLNPKLIF 1683
            QR++LL G RG+GKS  L+HAV +AR+ GW+VLFVP+ R L++ GIYCQPS  + G+YD P+ + + +  L  AHG QL+ + ++D     R+    G+   L V DM   GL            A +  A     D++ ELL+T    V+LA+DEY+ELFQ S WHY   + +  HL A                  D+     +    +  + +R P E     A  + +  P  G  C P P  P  G V+ A +  YPP+++++ K+ +W  F+   G  A   ++   PY+  EF   L HYA  +      L   +VA+V  K+   P+ +F
Sbjct:  354 QRSYLLTGRRGSGKSCVLDHAVLHARSTGWIVLFVPDGRNLVQKGIYCQPSPVLEGLYDLPVQSMKRLKTLREAHGDQLKNISIKDPEVLGRHE---GAKTLLDVMDM---GL------------ADQEHAGTAHYDVMRELLATTEAKVMLAIDEYNELFQMSQWHYGDNKLEAPHLTATLPLLPPLVSTGTGLAFADDSVA-ALANPEVVAERKRTPAE-----AGGVAWMSPETGAACLPPP--PANGIVVCAVSGRYPPLKRLR-KNKKWVPFEATAGRLAQAVSIPVEPYTRREFLRVLKHYARVEEVVNEPLDTMEVAKVHAKSDSLPEHVF 664          
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: A0A1V9YWF1_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YWF1_9STRA)

HSP 1 Score: 98.2 bits (243), Expect = 2.260e-18
Identity = 81/256 (31.64%), Postives = 122/256 (47.66%), Query Frame = 1
Query:  544 YFIIPDADLKARFPEGVAGYLRHEFDYAALRDRRAIMHRAPARRIIGHMKRAAAGDPS--AQRAFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAAD----GCFA--DIVEELLSTEAVPVLLAVDEYSELFQPSAWHYR------RDVDHLAAF-DIDD 1266
            +F + +A +K  +PEG+   ++  F+       +  M R P   II  MK      P+   ++AF+L G RGTGKS A+   V+YAR NGW+VLF P+ R       Y   SA + G +D  + A  ++ QL+  HG QL EL++  A    RY     +    S ++  K  L         + + AEN        C A  D+  EL      PVL+A+DEY+  F+ + + Y       RD+  + A  DID+
Sbjct:   61 FFELSEAKIKQNYPEGLPRRIKEYFELTE--PSKQFMLRKPTLDIISVMKDFPNNWPANWPEKAFVLDGERGTGKSVAIMQIVNYARENGWIVLFAPQVRSWCYDAPYVTKSAHMQGKFDIDVVAMDVLKQLIEYHGSQLAELKL-SADYGDRYYPHTFAKKPKSTSEFDKAELT--------LLDVAENGLKDDLLSCTALVDLRAELAKVTKFPVLIAIDEYNSFFEKTVFGYEGVDVAPRDISFIDALADIDE 305          
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: A0A024GQW6_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GQW6_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 3.460e-17
Identity = 112/411 (27.25%), Postives = 167/411 (40.63%), Query Frame = 1
Query:  499 VTSSDPDDVPRKQPTYFIIPDADLKARFPEGVAGYLRHEFDYAALRDRRAIMHRAPARRIIGHMKR-AAAGDPSAQRAFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARY----------AAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHYRRDVDHLAAFDIDDEDYEDKVREARLHVQLERIPGEKLTVVAPFMPFRPPPDGGLCDPAPFTPRRGAVIAAETLHYPPVRKIKGKSVRWPYFDDFVGTSADPWTVETAPYSAEEFAAALGHYAACDMYDERALGDADVARVRIKTMLNPKLIFHKFSF 1698
            +T  DP+    K   +F +   D  + FPE V   L   FD         IM R P   I+  MK            AF+L G RGTGKS AL   VH+ARAN W+VL+VP AR       Y  PS  +   +D  L+ Q+M+    ++H  QL+++ +++  +   Y          A        L++AD+ + G+              E+ A     D+  EL   E  PVL+A+DE+S  +Q + + +  D   +   DI        V +A L V                      PDG L +      + G  I A T  YP   K+  K      F D   T           Y+++E  + L +Y A     E  +  A++A  ++ T  NP L+F + SF
Sbjct:   58 ITEVDPESDTNK---FFALTQEDRTSFFPEAVTKRLVRAFDLIGYDH---IMLRKPTADILSVMKNWQQPTQCDRPPAFILDGERGTGKSLALLQIVHFARANNWIVLYVPRARSWCFRAPYVIPSTFIPSKFDIDLYGQQMLKVFASSHIKQLRQIPLRNEYKDRYYPTEKFSQRPKAGVKTDDVALTLADIVEIGI------------REEDLACVAVVDLRAELNKVEEFPVLIAIDEFSSWYQDTIFGF--DGKPVYPSDI-------SVVDALLDVG---------------------PDGYLKE---RKLKNGLFIGATTDRYPSKVKLWEKI----NFKDLRKTFG--------AYNSDEMESVLAYYTAVRFLVEE-MTQAEIAHFQLMTKSNPSLVFDRASF 404          
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: W7TU02_9STRA (Mitochondrial 28s ribosomal s29-like protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TU02_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 9.830e-17
Identity = 68/172 (39.53%), Postives = 84/172 (48.84%), Query Frame = 1
Query:  730 FLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGS-----SGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHYRR 1230
            FLL G RG+GK+A L HAVHYAR +GWVV FVP A + L  G   +PS    G +DTP  AQ  + QL  AHG Q   L          Y A  G      SG  +  D+   GL            +    A  C  ++   L + +A PVL AVDE SE F PS++ Y R
Sbjct:  421 FLLSGPRGSGKTATLYHAVHYARRSGWVVFFVPSAFEYLHEGGLIRPSPFYRGYFDTPDLAQTTLRQLGEAHGHQFASLP---------YTAPRGLESLELSGEYTCWDLMALGL------------SQRKWATTCLLELKRALENQDAYPVLFAVDEVSEWFYPSSYFYAR 571          
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: F0WVE2_9STRA (Uncharacterized protein AlNc14C294G10282 n=5 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0WVE2_9STRA)

HSP 1 Score: 94.0 bits (232), Expect = 2.430e-16
Identity = 115/418 (27.51%), Postives = 169/418 (40.43%), Query Frame = 1
Query:  487 AVQYVTSSDPDDVPRKQPTYFIIPDADLKARFPEGVAGYLRHEFDYAALRDRRAIMHRAPARRIIGHMKRAAAGDPSAQR-AFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDA-------TRRARYAAFAG---SSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHYRRDVDHLAAFDIDDEDYEDKVREARLHVQLERIPGEKLTVVAPFMPFRPPPDGGLCDPAPFTPRRGAVIAAETLHYPPV----RKIKGKSVRWPYFDDFVGTSADPWTVETAPYSAEEFAAALGHYAACDMYDERALGDADVARVRIKTMLNPKLIFHKFS 1695
            A   +T+ DP+    K   +F +   D  A FPE V   L   FD         IM R P   I+  MK       S +  A++L GARGTGKS AL   VH+ARAN W+VL+VP AR       Y  PS      +D  L+ Q+M+  L  +H  QL E+ +++        T +       G   +   L++AD+ + G+              E+ A     D+  EL   E  PVL+A+DE+S  +Q + + +  D   +   DI        V +A L V                      P+G L D      + G  I A T  YP       KI  K +R  +                  Y ++E  + L +Y A     E  +  A++A  ++ T  NP L+F + S
Sbjct:   57 ATHSITNFDPEADTNK---FFALTQEDRTAFFPEAVTKRLVRAFDLIGYNH---IMLRKPTAEILSVMKNWNQFTQSDRPPAYILDGARGTGKSLALLQIVHFARANNWIVLYVPRARSWCFRAPYVIPSTITPSKFDIDLYGQQMLKMLAKSHHHQLLEIPLRNEYGDRYYPTEKFEQRPKTGVKTNDAPLTLADIVEVGI------------REEDLACPAVVDLRAELNQVEEFPVLIAIDEFSSWYQDTIFGF--DGKPVYPSDI-------SVVDALLDVG---------------------PNGYLED---RKLKNGLFIGATTDRYPSKVKLWEKINFKEIRKTF----------------GAYGSDEMESVLAYYTAIRFLVEE-MTPAEIAHFQLMTKSNPGLVFDRAS 406          
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: A0A485KNI1_9STRA (Aste57867_9683 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNI1_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.590e-15
Identity = 72/235 (30.64%), Postives = 112/235 (47.66%), Query Frame = 1
Query:  544 YFIIPDADLKARFPEGVAGYLRHEFDYAALRDRRAIMHRAPARRIIGHMKRAAAGDPS--AQRAFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADG----CFA--DIVEELLSTEAVPVLLAVDEYSELFQPSAWHY 1224
            +F + D  +K  FP G+   L   F++  L  ++ +M R     I+  M       P+   ++AF+L G RGTGK+ AL  AV++AR NGW+VL VP AR+ +    Y   SA + G +D  +    ++ QL+  HG QL  L V+     A Y   + +    S ++  K  L         + +  EN        C A  D+  EL      PVL+A+DEY+  F+ + + Y
Sbjct:   65 FFELSDEQIKKNFPSGLPKRLNEMFEF--LEPKKHLMLRKSTASILDAMTDFPQKWPAHWPEKAFVLDGERGTGKTVALIQAVNFARENGWIVLHVPHAREWVNDAPYVTKSAHIEGKFDIDVVGMDILKQLIECHGEQLATLSVRG-DYGAHYYPRSFAKKPKSESEYDKSSLT--------LLDICENGLKDDLLTCKAVLDLKAELAQVTEFPVLIAIDEYNTWFRKTVFGY 288          
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: A0A7S3ZXU8_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZXU8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 3.710e-15
Identity = 61/166 (36.75%), Postives = 86/166 (51.81%), Query Frame = 1
Query:  727 AFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHY 1224
            A+LL GARG GKS AL   V  ARA GW+ LFV  AR +   G Y  PS   AG ++ P  ++ ++     AHG  L  ++  DA        + G++ R  V          G  +DD+      + A    AD+V+ L + +A PVL+AVDEYS LF+P+  +Y
Sbjct:  150 AYLLTGARGAGKSVALAQIVTQARARGWLCLFVARARDVGHHGDYVVPSPHHAGRFEEPSRSREVLEAFREAHGNDLATVKCTDAAAER----WGGATLREVV----------GAALDDK---KRGDEASTALADVVDGLRAHDAAPVLIAVDEYSALFEPATAYY 298          
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: A0A7S2WS36_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS36_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 5.690e-15
Identity = 68/218 (31.19%), Postives = 103/218 (47.25%), Query Frame = 1
Query:  583 PEGVAGYLRHEFDYAALRDRRAIMHRAPARRIIGHMKRAAAGDPSAQRA----FLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHY 1224
            PE   GYL       AL  R   +    A R +   +  AAG+  A        L    RG GKS +L HAVH+AR  GWVVLFV ++ + ++ G + QPS  V GM+D P  A  ++ +  A HG  +  L VQ    +A +      S   ++ ++ + GL            A ++AA    AD+  EL +   +P LLA+D    L++ + +H+
Sbjct:   75 PEDSMGYLTRSDGRLALMVRSPALQVIQALRAVSDKEGGAAGESEAAELPPYHVLTSDFRGVGKSLSLAHAVHWARDQGWVVLFVTDSLEFVQGGHWVQPSPYVEGMFDQPQVAHAVLEEFHAIHGEAVASLPVQTDEAKAHF------SSATTLGELMQAGL------------ADQDAASQAVADLRLELGAQTDLPFLLAIDNVDLLYRNTEYHH 274          
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Match: F0XXL1_AURAN (Fe2OG dioxygenase domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XXL1_AURAN)

HSP 1 Score: 81.6 bits (200), Expect = 1.670e-12
Identity = 65/178 (36.52%), Postives = 88/178 (49.44%), Query Frame = 1
Query:  727 AFLLRGARGTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDTPLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAKPGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSELFQPSAWHYRRDVDHLAAFDI 1260
            A+LL G RG GKS AL   V +ARANGW+ L+VP    +   G Y  PS   AGM++ P  ++ ++    AAHG QL  + V+D T   R+ A   +   L  A +AK          D + EA+   +D  F     EL      PVLLAVDEY+     + + Y  D   LA  D+
Sbjct:  122 AYLLTGPRGAGKSVALATVVSWARANGWLALYVPRGWDVANAGDYVVPSPHHAGMFEEPRGSRALLEAFDAAHGGQLAAVAVKDETVADRWGAA--TLRELLDAALAK----------DRLDEASTALSDLRF-----ELGRATEFPVLLAVDEYTSFLGRTDYFY--DHARLAPADL 280          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351134 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8P4_9STRA0.000e+0100.00Mitochondrial ribosomal death-associated protein 3... [more]
D8LJR3_ECTSI2.200e-3833.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A1V9YWF1_9STRA2.260e-1831.64Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A024GQW6_9STRA3.460e-1727.25Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
W7TU02_9STRA9.830e-1739.53Mitochondrial 28s ribosomal s29-like protein n=4 T... [more]
F0WVE2_9STRA2.430e-1627.51Uncharacterized protein AlNc14C294G10282 n=5 Tax=A... [more]
A0A485KNI1_9STRA3.590e-1530.64Aste57867_9683 protein n=1 Tax=Aphanomyces stellat... [more]
A0A7S3ZXU8_9STRA3.710e-1536.75Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S2WS36_9STRA5.690e-1531.19Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
F0XXL1_AURAN1.670e-1236.52Fe2OG dioxygenase domain-containing protein n=1 Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_81contigContig_81:268161..271707 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351134|estExt_Genemark1.C_Ctg_810044
BRITEbr01610,ko00000,ko01000,ko03011,ko03029
KEGG koko:K06072,ko:K17408
EC1.14.99.29
GOsGO:0000313,GO:0000314,GO:0003674,GO:0003735,GO:0005198,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005759,GO:0005761,GO:0005763,GO:0005840,GO:0006412,GO:0006414,GO:0006415,GO:0006518,GO:0006807,GO:0006915,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0012501,GO:0015935,GO:0016020,GO:0016043,GO:0019538,GO:0019866,GO:0022411,GO:0023052,GO:0031090,GO:0031966,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032543,GO:0032984,GO:0032991,GO:0034641,GO:0034645,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043603,GO:0043604,GO:0043624,GO:0043933,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0065007,GO:0070013,GO:0070125,GO:0070126,GO:0071704,GO:0071840,GO:0097190,GO:0098798,GO:0140053,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred nameDAP3
Descriptionmitochondrial translation
COG categoryS
Max annot lvl2759|Eukaryota
EggNOG OGsKOG3928@1|root,KOG3928@2759|Eukaryota
Evalue8.28e-39
Seed ortholog2880.D8LJR3
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionMitochondrial ribosomal protein S23/S29
Ec32 orthologEc-12_002970.1
TranscriptId351456
TrackFilteredModels1
ProteinId351134
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351134gene_9764Tribonema minus UTEX_B_3156 geneContig_81 268161..271707 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9764_2exon_9764_2Tribonema minus UTEX_B_3156 exonContig_81 268161..269357 -
exon_9764_1exon_9764_1Tribonema minus UTEX_B_3156 exonContig_81 271174..271707 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9764UTR3_9764Tribonema minus UTEX_B_3156 three_prime_UTRContig_81 268161..268178 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9764CDS_9764Tribonema minus UTEX_B_3156 CDSContig_81 271174..271707 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351134Trimin1|351134|estExt_Genemark1.C_Ctg_810044Tribonema minus UTEX_B_3156 polypeptideContig_81 268179..271707 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9764 ID=mRNA_9764|Name=jgi.p|Trimin1|351134|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1731bp|location=Sequence derived from alignment at Contig_81:268161..271707- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAGGCATATCGTGGCCATCGCAGGCCGCAGAGCCCGAGCTCGTGGCGC
GCACACCTGGATTGACCACATTTGCTCGCTGCAGTCGCTGACGATCCAGC
CTGTGGCACATGCATTGAGACAGACGGCGTGCTTGAGCAGCCTCGGCGGT
GGTGGCGGCAGACGACCGCGATTCGGCGGCATAGGTGGTCAGTACGGCGC
TGGTGGCTCAAGAGCAGGGCGACCTGGTTACGACTCCACCTCACGGACTC
CCGGGGACCCAGACCGCGTCATGGACTTCATGGACGATGACTTTGCAGAT
ATCGACGATCTCGATTATGGTCTCGTTCCTGATGGCGCAGTTGCTGTTCC
CGGCGGCGAAGAGTCGTTCTTCAGCGGCTTGAAAAGCAAGTCGGCACGCT
CGCGCGAAAACAGGATGCAGGAGATGAGTGGGGGGGTAGGGAGGGCAGAG
GATGCGGTCGGCGCAGCAGCTACCAATCAGGCGCCTGCGGTGCAGTACGT
TACATCCAGTGACCCAGACGATGTACCTCGCAAGCAACCCACGTACTTCA
TCATTCCCGACGCGGACCTCAAGGCGCGGTTCCCCGAGGGCGTCGCGGGC
TACCTGCGCCACGAGTTCGACTACGCCGCGCTGCGCGACAGGCGCGCCAT
CATGCACCGCGCGCCCGCGCGCCGCATCATCGGCCACATGAAGCGCGCCG
CCGCGGGGGACCCCAGCGCGCAGCGCGCCTTCCTGCTGCGCGGCGCGCGC
GGCACCGGCAAGTCTGCAGCGCTCAACCACGCCGTGCACTACGCGCGCGC
CAACGGCTGGGTCGTGCTGTTCGTCCCGGAGGCGCGCAAGCTGCTGCGGA
CGGGCATCTACTGCCAGCCGAGCGCGCGCGTCGCGGGCATGTACGACACG
CCGCTGCACGCGCAGCGCATGATTGCGCAGCTGCTCGCGGCGCACGGCCC
CCAACTTCAAGAACTTGAAGTCCAGGACGCGACGCGGCGCGCGCGCTACG
CGGCGTTCGCGGGATCCTCCGGGCGTCTCAGCGTCGCCGACATGGCCAAG
CCGGGGCTGCCTGCGGGGAAGGGGGTGGACGATGAGGTCTTCGAGGCAGC
GGAGAACGCCGCGGACGGCTGCTTCGCGGACATCGTGGAGGAGCTGCTGA
GCACTGAGGCGGTGCCCGTGCTGCTCGCGGTGGACGAGTACTCGGAGCTG
TTCCAGCCGAGCGCGTGGCACTACCGGCGCGACGTGGACCACCTCGCCGC
CTTCGACATCGACGACGAGGACTACGAGGACAAGGTGCGCGAGGCGCGCC
TCCACGTGCAACTCGAGCGCATCCCCGGCGAGAAGCTCACGGTCGTGGCG
CCATTCATGCCGTTCCGCCCCCCGCCGGACGGCGGCCTGTGCGACCCCGC
GCCCTTCACCCCGCGGCGCGGCGCCGTCATCGCCGCGGAGACGCTGCACT
ACCCGCCGGTGCGGAAGATCAAGGGGAAGAGCGTCAGGTGGCCGTACTTT
GACGACTTTGTGGGGACGTCTGCGGACCCGTGGACGGTGGAGACGGCGCC
GTACTCGGCGGAGGAGTTCGCGGCGGCGCTGGGGCACTACGCGGCGTGCG
ACATGTACGACGAGAGGGCGCTCGGGGACGCTGACGTCGCGCGCGTGCGC
ATCAAGACCATGCTCAACCCCAAGCTCATCTTCCACAAGTTCAGCTTCAA
GCCGTACGGGTGAGGGGAAGGGGGGGGGGGG
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protein sequence of jgi.p|Trimin1|351134

>Trimin1|351134|estExt_Genemark1.C_Ctg_810044 ID=Trimin1|351134|estExt_Genemark1.C_Ctg_810044|Name=jgi.p|Trimin1|351134|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=571bp
MRHIVAIAGRRARARGAHTWIDHICSLQSLTIQPVAHALRQTACLSSLGG
GGGRRPRFGGIGGQYGAGGSRAGRPGYDSTSRTPGDPDRVMDFMDDDFAD
IDDLDYGLVPDGAVAVPGGEESFFSGLKSKSARSRENRMQEMSGGVGRAE
DAVGAAATNQAPAVQYVTSSDPDDVPRKQPTYFIIPDADLKARFPEGVAG
YLRHEFDYAALRDRRAIMHRAPARRIIGHMKRAAAGDPSAQRAFLLRGAR
GTGKSAALNHAVHYARANGWVVLFVPEARKLLRTGIYCQPSARVAGMYDT
PLHAQRMIAQLLAAHGPQLQELEVQDATRRARYAAFAGSSGRLSVADMAK
PGLPAGKGVDDEVFEAAENAADGCFADIVEELLSTEAVPVLLAVDEYSEL
FQPSAWHYRRDVDHLAAFDIDDEDYEDKVREARLHVQLERIPGEKLTVVA
PFMPFRPPPDGGLCDPAPFTPRRGAVIAAETLHYPPVRKIKGKSVRWPYF
DDFVGTSADPWTVETAPYSAEEFAAALGHYAACDMYDERALGDADVARVR
IKTMLNPKLIFHKFSFKPYG*
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mRNA from alignment at Contig_81:268161..271707-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9764 ID=mRNA_9764|Name=jgi.p|Trimin1|351134|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3547bp|location=Sequence derived from alignment at Contig_81:268161..271707- (Tribonema minus UTEX_B_3156 )
ATGAGGCATATCGTGGCCATCGCAGGCCGCAGAGCCCGAGCTCGTGGCGC GCACACCTGGATTGACCACATTTGCTCGCTGCAGTCGCTGACGATCCAGC CTGTGGCACATGCATTGAGACAGACGGCGTGCTTGAGCAGCCTCGGCGGT GGTGGCGGCAGACGACCGCGATTCGGCGGCATAGGTGGTCAGTACGGCGC TGGTGGCTCAAGAGCAGGGCGACCTGGTTACGACTCCACCTCACGGACTC CCGGGGACCCAGACCGCGTCATGGACTTCATGGACGATGACTTTGCAGAT ATCGACGATCTCGATTATGGTCTCGTTCCTGATGGCGCAGTTGCTGTTCC CGGCGGCGAAGAGTCGTTCTTCAGCGGCTTGAAAAGCAAGTCGGCACGCT CGCGCGAAAACAGGATGCAGGAGATGAGTGGGGGGGTAGGGAGGGCAGAG GATGCGGTCGGCGCAGCAGCTACCAATCAGGCGCCTGCGGTGCAGTACGT TACATCCAGTGACCCAGACGATGTACCTCGCAAGGTGAGTGCTTTGCGCC ATGACGCAATCTCAATGCCCTGTTCAAGCTGCACAGCTCCAAGAGCTTAG TTGTCAAGTCGCGATGCACGCGGAATCAAGCAGTGTCTGCAGTGTGGCAT GCCTGTGGTGCATATGTGTGTACTGCTGCATACTCCATCTACTTTTTGCA GAAAGTCTGTTTCTCGCGCAACGCGCATTGTGGCGCTGATTCCCAGTGAC ACTGTCGCTCATGTTGGCTTAGCATTGCTGATGCCCCCGTGCACTGCCAA TGGCACAGTGGCACTGTGTCTCAAAGCGTGCAGCTCAAACGCTCAGAGTC ATTACTTGGACAAAGCGTACACTTCAATCGATCACATGGCCTCTGGCGCA AGAAAGCATGTCACCACAGCCTGCGTTTGTACTTTGAAACTGATTGATCA AAGTGCGTGTAACAGTGCATATCCACTCTGCAGCTCTCTGAGCACCAACT CTGCACCATCTACCAGTTCCACGAGTGTCACACGCCCCAGCTGCTCTCTA AGTACGGTCACAGTTAGCTGTGTGGCGCTGGATAGGCATCAACTATGCTT GAACTTGCTACTGTACAAGCAGCGTCATATAGGGTGAAGTATTGGCGTAG GACCATGCATGCACAGCCAACATGTGCATGCGACAGGTCCTTCATGTCTG GCACAAGCTGTGTGCTCTCGTGTTGTTGGTAGGCAGCCCCAATGGCAGTA GCCGCAGAACCTTTGCAGAACGCCAATGGAAACTTCAACTCAAGTGCCGA CCTTTGCCCAGCTGGGCTGGTGATGAGTGGATAACTAAGGAGAACACCGC TTGAGGCATCACTTTCCATTAGGCCAGGAAGTCATAAATGCATGAGTACT GCACGAGTATTGTATGAGTTATATGCGCATGAGAGCACTAGTTGACCGGT CACCACTGATTTACGGTTGTTTAGTCATGACAGTACAAGAATGCACTGCA GCATTTGACGAGTTCTGGAGAATCTCATCAGTGGGGAAGGCACATGTGAC TGCCAGGGCATATCATCAAGGTCCAGGAGCTCACAATTGTGCGTCCGGAG CACACAGCGAGTGCTACGAAGGCGCTGAATTCCAGCGGAGAAAGCATACG CACGTCATGTACTCATTGTGCTCAGCGAGCAAGCAACTGAAGACGTTGAG TTTTGGTACTCAGGTTCCCGCGCGCACACACCAGCAATTGTGAGCGTATT TAAATGGAGGAGTGATAGACCATTACTGGCATGTGTCCAGGCCGTGTACA AGTACTTGAGAACTACGTACCTTTGTTTCAGCAAGTGAGCACACGACTAT TGCCCGTAGTCGCGTCTGAACTTAAGACATGGTAGCAGTGCTCATCTTCA CATTCATCTTCGTGCAAGTTCTGAACTGGGCCACCATCGCCCCCCCTTCT GTCAATTGTCCCCCGCAGCAGCCCGCGTAATTCATAACATTACACGCAGC CAAGTCATCAAGCACTTCAGACGTTTTCCTATGATCGTCCGCAGTCACTC AATAATCATACCCCCCCCCCCCCCCCTCCCAGCAACCTGCGTACTTAATC ATACCAGATCTAGCTTAGTCGTGAACATCTCCAGACAGATGCTTTCCCTC GATCGTCCGCAGTCATCACACTCAATCATCATACCCTGATCCCCCCCCTC CCCCCCCTCCTCCCCCCCACCCCCCAAACCAAACCCCCCCTCGCAGCAAC CCGCGTACTTCATCGCACGTTTTCCCTTGATCGTCCGCAGTCATTCAACA ACAATACCTACCCTGATTACCCCCCCCCCCCCCCCCCCCCCCCCCTGTAG CAACCCACGTACTTCATCATTCCCGACGCGGACCTCAAGGCGCGGTTCCC CGAGGGCGTCGCGGGCTACCTGCGCCACGAGTTCGACTACGCCGCGCTGC GCGACAGGCGCGCCATCATGCACCGCGCGCCCGCGCGCCGCATCATCGGC CACATGAAGCGCGCCGCCGCGGGGGACCCCAGCGCGCAGCGCGCCTTCCT GCTGCGCGGCGCGCGCGGCACCGGCAAGTCTGCAGCGCTCAACCACGCCG TGCACTACGCGCGCGCCAACGGCTGGGTCGTGCTGTTCGTCCCGGAGGCG CGCAAGCTGCTGCGGACGGGCATCTACTGCCAGCCGAGCGCGCGCGTCGC GGGCATGTACGACACGCCGCTGCACGCGCAGCGCATGATTGCGCAGCTGC TCGCGGCGCACGGCCCCCAACTTCAAGAACTTGAAGTCCAGGACGCGACG CGGCGCGCGCGCTACGCGGCGTTCGCGGGATCCTCCGGGCGTCTCAGCGT CGCCGACATGGCCAAGCCGGGGCTGCCTGCGGGGAAGGGGGTGGACGATG AGGTCTTCGAGGCAGCGGAGAACGCCGCGGACGGCTGCTTCGCGGACATC GTGGAGGAGCTGCTGAGCACTGAGGCGGTGCCCGTGCTGCTCGCGGTGGA CGAGTACTCGGAGCTGTTCCAGCCGAGCGCGTGGCACTACCGGCGCGACG TGGACCACCTCGCCGCCTTCGACATCGACGACGAGGACTACGAGGACAAG GTGCGCGAGGCGCGCCTCCACGTGCAACTCGAGCGCATCCCCGGCGAGAA GCTCACGGTCGTGGCGCCATTCATGCCGTTCCGCCCCCCGCCGGACGGCG GCCTGTGCGACCCCGCGCCCTTCACCCCGCGGCGCGGCGCCGTCATCGCC GCGGAGACGCTGCACTACCCGCCGGTGCGGAAGATCAAGGGGAAGAGCGT CAGGTGGCCGTACTTTGACGACTTTGTGGGGACGTCTGCGGACCCGTGGA CGGTGGAGACGGCGCCGTACTCGGCGGAGGAGTTCGCGGCGGCGCTGGGG CACTACGCGGCGTGCGACATGTACGACGAGAGGGCGCTCGGGGACGCTGA CGTCGCGCGCGTGCGCATCAAGACCATGCTCAACCCCAAGCTCATCTTCC ACAAGTTCAGCTTCAAGCCGTACGGGTGAGGGGAAGGGGGGGGGGGG
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Coding sequence (CDS) from alignment at Contig_81:268161..271707-

>mRNA_9764 ID=mRNA_9764|Name=jgi.p|Trimin1|351134|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1713bp|location=Sequence derived from alignment at Contig_81:268161..271707- (Tribonema minus UTEX_B_3156 )
ATGAGGCATATCGTGGCCATCGCAGGCCGCAGAGCCCGAGCTCGTGGCGC
GCACACCTGGATTGACCACATTTGCTCGCTGCAGTCGCTGACGATCCAGC
CTGTGGCACATGCATTGAGACAGACGGCGTGCTTGAGCAGCCTCGGCGGT
GGTGGCGGCAGACGACCGCGATTCGGCGGCATAGGTGGTCAGTACGGCGC
TGGTGGCTCAAGAGCAGGGCGACCTGGTTACGACTCCACCTCACGGACTC
CCGGGGACCCAGACCGCGTCATGGACTTCATGGACGATGACTTTGCAGAT
ATCGACGATCTCGATTATGGTCTCGTTCCTGATGGCGCAGTTGCTGTTCC
CGGCGGCGAAGAGTCGTTCTTCAGCGGCTTGAAAAGCAAGTCGGCACGCT
CGCGCGAAAACAGGATGCAGGAGATGAGTGGGGGGGTAGGGAGGGCAGAG
GATGCGGTCGGCGCAGCAGCTACCAATCAGGCGCCTGCGGTGCAGTACGT
TACATCCAGTGACCCAGACGATGTACCTCGCAAGCAACCCACGTACTTCA
TCATTCCCGACGCGGACCTCAAGGCGCGGTTCCCCGAGGGCGTCGCGGGC
TACCTGCGCCACGAGTTCGACTACGCCGCGCTGCGCGACAGGCGCGCCAT
CATGCACCGCGCGCCCGCGCGCCGCATCATCGGCCACATGAAGCGCGCCG
CCGCGGGGGACCCCAGCGCGCAGCGCGCCTTCCTGCTGCGCGGCGCGCGC
GGCACCGGCAAGTCTGCAGCGCTCAACCACGCCGTGCACTACGCGCGCGC
CAACGGCTGGGTCGTGCTGTTCGTCCCGGAGGCGCGCAAGCTGCTGCGGA
CGGGCATCTACTGCCAGCCGAGCGCGCGCGTCGCGGGCATGTACGACACG
CCGCTGCACGCGCAGCGCATGATTGCGCAGCTGCTCGCGGCGCACGGCCC
CCAACTTCAAGAACTTGAAGTCCAGGACGCGACGCGGCGCGCGCGCTACG
CGGCGTTCGCGGGATCCTCCGGGCGTCTCAGCGTCGCCGACATGGCCAAG
CCGGGGCTGCCTGCGGGGAAGGGGGTGGACGATGAGGTCTTCGAGGCAGC
GGAGAACGCCGCGGACGGCTGCTTCGCGGACATCGTGGAGGAGCTGCTGA
GCACTGAGGCGGTGCCCGTGCTGCTCGCGGTGGACGAGTACTCGGAGCTG
TTCCAGCCGAGCGCGTGGCACTACCGGCGCGACGTGGACCACCTCGCCGC
CTTCGACATCGACGACGAGGACTACGAGGACAAGGTGCGCGAGGCGCGCC
TCCACGTGCAACTCGAGCGCATCCCCGGCGAGAAGCTCACGGTCGTGGCG
CCATTCATGCCGTTCCGCCCCCCGCCGGACGGCGGCCTGTGCGACCCCGC
GCCCTTCACCCCGCGGCGCGGCGCCGTCATCGCCGCGGAGACGCTGCACT
ACCCGCCGGTGCGGAAGATCAAGGGGAAGAGCGTCAGGTGGCCGTACTTT
GACGACTTTGTGGGGACGTCTGCGGACCCGTGGACGGTGGAGACGGCGCC
GTACTCGGCGGAGGAGTTCGCGGCGGCGCTGGGGCACTACGCGGCGTGCG
ACATGTACGACGAGAGGGCGCTCGGGGACGCTGACGTCGCGCGCGTGCGC
ATCAAGACCATGCTCAACCCCAAGCTCATCTTCCACAAGTTCAGCTTCAA
GCCGTACGGGTGA
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