mRNA_9760 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351130
Unique NamemRNA_9760
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A836C901_9STRA (Ribosomal RNA small subunit methyltransferase J n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C901_9STRA)

HSP 1 Score: 546 bits (1406), Expect = 1.780e-195
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 3
Query:   81 MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALSKRNGHDK 926
            MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALSKRNGHDK
Sbjct:    1 MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALSKRNGHDK 282          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A7S3XWK9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWK9_HETAK)

HSP 1 Score: 172 bits (436), Expect = 1.910e-48
Identity = 98/233 (42.06%), Postives = 138/233 (59.23%), Query Frame = 3
Query:  180 QQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLEC-ERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYA 875
            + +  A+ L ++ +G LG+   +    PL VDF  GK+GYR  +   E + KAV+      P+VWD+TAGLGRDSF++A AGCRV M ERSPV+ ++L D L RL    +  ++++ S + L + DS  +  A  +     P V  LDPMFP K+KKAL KKDMQ+LQ L   G+  +    +++   LF  A      +VVVKRP KG  L   P P+  L G++NRFDVY+
Sbjct:   49 KDQGYAYSLQFNNEGALGIHCHTAKFSPLYVDFTSGKLGYRGCRPEVEQIYKAVQLKDTRTPVVWDMTAGLGRDSFILACAGCRVHMLERSPVIGSILLDGLERLGKDEDQQSKEIRSLLSLSIGDSTKMQMASVINTVPEPQVVYLDPMFPAKSKKALAKKDMQILQGLLGHGIDQAEKEEEEE--NLFNVALRLCSRRVVVKRPAKGPPLAGRP-PSFVLPGKTNRFDVYS 278          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A0G4GL10_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GL10_VITBC)

HSP 1 Score: 153 bits (386), Expect = 3.030e-40
Identity = 111/270 (41.11%), Postives = 146/270 (54.07%), Query Frame = 3
Query:  183 QEACAFLLAY-DAKGHLGLSDVSNSVQP-LTVDFLEGKMGYRAA-----QQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQL-----------------------HVADSCSL---GDAFQ-----LECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRS--NRFDVY 872
            Q  C+FLL Y  + GHL L    +SV+  L+VD++ G++G R       Q   E+V KAV S+    P VWD+TAGLGRD+ V+A AGC V M ER P +AALL+D + RL    +A+ +  A    +                       H  DS  L   GD  +     +  ERPDVC LDPMFPP+TK A V+KD+++LQ L         ++TD D   LF TA    R +VVVKRP  G  L+ V +P+ S+RGR   NRFDVY
Sbjct:   80 QSECSFLLEYRSSDGHLTLRRRGDSVRSALSVDYVGGRLGRRLVGVSRGQGPREMVAKAVTSAKVKAPCVWDMTAGLGRDAAVLAAAGCTVRMLERHPGLAALLEDGVQRLHRHTDANTRPAADSQGIFLDGTPSAALVPGPGFSKRLLGCHCMDSSGLIKPGDLQRDVPSWMTDERPDVCYLDPMFPPRTKSAEVRKDLRLLQDLLGH------SDTDADHEMLFRTALRLCRWRVVVKRPASGPPLLGV-QPSMSVRGRDTINRFDVY 342          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A1J5R019_9ZZZZ (Ribosomal RNA small subunit methyltransferase J n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5R019_9ZZZZ)

HSP 1 Score: 149 bits (377), Expect = 5.720e-40
Identity = 94/206 (45.63%), Postives = 127/206 (61.65%), Query Frame = 3
Query:  264 LTVDFLEGKMGYRAAQQAG--ELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAA-PEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 872
            + VDF+ G +GYR     G  + + KAV     PPPLV D TAGLGRD+F++A  G RV++ ER+P V ALL D L R AAA PE  A  +++RM L   D+ ++  A     ERPDV L+DPM PP+   ALVKKDM++L+ L            D DAA+L A A A A  +VV+K P++ D L  +PKP+H + G+S R+DV+
Sbjct:   44 VVVDFVGGALGYRHRHGGGKGQALHKAVGFGKGPPPLVADATAGLGRDAFLLAAEGARVILIERAPAVQALLADGLARAAAAGPEYAA--ISARMTLIRGDARAVLPALP---ERPDVVLVDPMHPPRGNSALVKKDMRLLREL---------VGADPDAAELMAAALATAVKRVVLKWPLRADFLPGLPKPSHQILGKSTRYDVF 235          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A3A6NAP7_9DELT (Ribosomal RNA small subunit methyltransferase J n=1 Tax=Desulfobulbus sp. TaxID=895 RepID=A0A3A6NAP7_9DELT)

HSP 1 Score: 150 bits (378), Expect = 5.900e-40
Identity = 110/277 (39.71%), Postives = 144/277 (51.99%), Query Frame = 3
Query:   87 PASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNS--VQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY---------AAGP 884
            P  +VA   PA     +R   LAA L   L   +    LL    + HL L    N      + V+F+ GK GYR  Q   E++++AV    K P  V D T GLGRD+F++A  GC V + ER PV+AALL D L R    PE    + A+R+ L +ADS  +        E+ DV  LDPMFPP++K A VKKD+++LQ L         T  ++D   L A A   A ++VVVKRP KG   +P P P+HS  G + RFDVY         AAGP
Sbjct:    8 PRISVACSLPALRAQADR---LAASLGLRLADDQTGTDLLLRLTERHLELLSPGNRELTGAVFVEFVVGKAGYRRRQGGREMLLRAVGCKAKQPRKVLDATGGLGRDAFILADHGCTVRVVERHPVIAALLADGLRRALGHPETG--EAAARITLTLADSRHILADMARTGEQLDVVYLDPMFPPRSKSAKVKKDLRILQLL---------TGPEEDGGTLLAAALQTAAARVVVKRP-KGAPALPGPAPSHSHAGATTRFDVYLRPAGGGRPAAGP 269          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: UPI0003745CEA (class I SAM-dependent methyltransferase n=1 Tax=Dasania marina TaxID=471499 RepID=UPI0003745CEA)

HSP 1 Score: 149 bits (377), Expect = 6.720e-40
Identity = 92/216 (42.59%), Postives = 127/216 (58.80%), Query Frame = 3
Query:  228 LGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYA 875
            LG+ ++++   P++VDF  G   +R     GEL+VKA+  S +  P V D+TAGLGRDSFV+A  G  V M ERSP+VA+LL D L R       + Q +A RMQL   ++     A   E + PD+  +DPMFPP  K ALVKKDM+V  ++            + D ++L ATA A AR +VVVKRP K   L    +P+ SL G++ RFD+Y+
Sbjct:   51 LGVKELASKAGPVSVDFTSGTAAHRRNMGGGELIVKAMGGSKQNRPSVVDITAGLGRDSFVLASWGFTVQMLERSPIVASLLADGLRRAQHCENFEVQDIAGRMQLWQGEAQDYLVALSDE-QLPDIIYMDPMFPPSKKSALVKKDMRVFHAI---------VGKEQDGSELLATARAKARHRVVVKRPKKSAYLADQ-QPSFSLAGKAVRFDIYS 255          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: F3KF75_9GAMM (Ribosomal RNA small subunit methyltransferase J n=1 Tax=gamma proteobacterium IMCC2047 TaxID=434085 RepID=F3KF75_9GAMM)

HSP 1 Score: 149 bits (377), Expect = 8.090e-40
Identity = 91/206 (44.17%), Postives = 121/206 (58.74%), Query Frame = 3
Query:  261 PLTVDFLEGKMGYRA--AQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 872
            P+ +DF+ G +G+R   +  A ELV  AV +     P V D TAGLGRD+F++A  GC V+M ERSPVVA +L+DAL R    PE     V +RMQL+ AD+C    A   E + P+V  LDPMFP ++K A VKK+M++LQ L            D D  +LF TA   A  +VVVKRP     +  + KP H + G+S RFD+Y
Sbjct:   70 PIVIDFVGGALGFRGKHSPHAKELVANAVGAKAGHTPTVLDATAGLGRDAFILASRGCSVIMLERSPVVALMLEDALRRAQLDPEVS--PVTARMQLYQADACQFMTALSSE-DYPEVVYLDPMFPERSKSASVKKEMRLLQQLL---------GADMDTLELFETALTVATRRVVVKRPKLAPCISEL-KPHHVVEGKSGRFDIY 262          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A831QLE4_9DELT (Ribosomal RNA small subunit methyltransferase J n=4 Tax=Bacteria TaxID=2 RepID=A0A831QLE4_9DELT)

HSP 1 Score: 150 bits (379), Expect = 1.050e-39
Identity = 96/227 (42.29%), Postives = 128/227 (56.39%), Query Frame = 3
Query:  261 PLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALS-----KRNGHDK 926
            P+  +F++G  GYR  +   E++++AV      PP V D T G+GRD+F++AG GC V +FER+PVVAALL+D L+R AA+PE   +  A+R+ L  ADS    +       + DV  LDPMFP +TK A VKK++Q+LQ L            DDD  +L A A   AR++VVVKRP     L    KP+H L G + RFDVY   P    A       K  GH K
Sbjct:   71 PVWAEFVKGPAGYRRRRGGREMLIRAVGVKQDRPPSVLDATGGMGRDAFILAGCGCAVHIFERNPVVAALLRDGLLRAAASPET--RDSAARIHLVAADSRKFLENMTNPGGKIDVVYLDPMFPGRTKSARVKKELQILQLL---------VGGDDDTEQLLAAALNAARNRVVVKRPKSAPPLAGR-KPSHCLSGTTTRFDVYITIPAEVYAEDRGRTLKNPGHGK 285          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A2K9LLM3_9GAMM (Ribosomal RNA small subunit methyltransferase J n=1 Tax=Ketobacter alkanivorans TaxID=1917421 RepID=A0A2K9LLM3_9GAMM)

HSP 1 Score: 147 bits (372), Expect = 3.240e-39
Identity = 96/204 (47.06%), Postives = 120/204 (58.82%), Query Frame = 3
Query:  261 PLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 872
            P+TVDF+ GK G+R  +   E++VKAV    K P  V D TAGLGRDSF++A AG  V   ER P +A LL D L R   +PE  A  VA R+QL    + S+  A   E ERPDV  LDPMFP +TK ALVKK+M++ + +            D DA  L   A   AR +VVVKRP K D+ V   KP + L G+S+RFDVY
Sbjct:   64 PVTVDFIHGKTGFRFMRAQHEMIVKAVAGRSKDPLRVMDATAGLGRDSFILAAAGFAVTAIERHPAIACLLADGLDRARYSPEGAA--VAERIQLQWGVAHSIL-AQLAESERPDVVYLDPMFPERTKHALVKKEMRLFRDV---------VGDDMDADALMEIALEVARKRVVVKRPRKADS-VAGRKPGYQLLGKSSRFDVY 254          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A3B0V7D3_9ZZZZ (16S rRNA (Guanine(1516)-N(2))-methyltransferase n=2 Tax=root TaxID=1 RepID=A0A3B0V7D3_9ZZZZ)

HSP 1 Score: 147 bits (372), Expect = 4.330e-39
Identity = 89/204 (43.63%), Postives = 123/204 (60.29%), Query Frame = 3
Query:  261 PLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 872
            P+  +F++G  GYR  +   E++++A       PP V D T G+GRD+F++AG GC V +FER+PVVAALL+D L+R AA+PE   ++ A R+ L  ADS    +    + +  DV  LDPMFP +TK ALVKK++Q+LQ L            +DD  +L A A   AR++VVVKRP     L    KP+H L G + RFDVY
Sbjct:   73 PVWAEFVKGPAGYRRRRGGREMLIRAAGVKHDRPPSVLDATGGMGRDAFLLAGCGCTVHIFERNPVVAALLRDGLLRAAASPET--RESAERIHLVAADSRKFLENMTNQGKDIDVVYLDPMFPERTKSALVKKELQILQLL---------VGGEDDTEQLLAAALNAARNRVVVKRPKTAPPLAGR-KPSHCLIGTTTRFDVY 264          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C901_9STRA1.780e-195100.00Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A7S3XWK9_HETAK1.910e-4842.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4GL10_VITBC3.030e-4041.11Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A1J5R019_9ZZZZ5.720e-4045.63Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A3A6NAP7_9DELT5.900e-4039.71Ribosomal RNA small subunit methyltransferase J n=... [more]
UPI0003745CEA6.720e-4042.59class I SAM-dependent methyltransferase n=1 Tax=Da... [more]
F3KF75_9GAMM8.090e-4044.17Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A831QLE4_9DELT1.050e-3942.29Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A2K9LLM3_9GAMM3.240e-3947.06Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A3B0V7D3_9ZZZZ4.330e-3943.6316S rRNA (Guanine(1516)-N(2))-methyltransferase n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_81contigContig_81:238404..240738 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351130|estExt_Genemark1.C_Ctg_810040
DescriptionPutative SAM-dependent methyltransferase
COG categoryQ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0500@1|root,2SA1Z@2759|Eukaryota
Evalue1.25e-40
Seed ortholog2880.D7FPX8
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-01_008260.1
TranscriptId351452
TrackFilteredModels1
ProteinId351130
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351130gene_9760Tribonema minus UTEX_B_3156 geneContig_81 238404..240738 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351130Trimin1|351130|estExt_Genemark1.C_Ctg_810040Tribonema minus UTEX_B_3156 polypeptideContig_81 238411..240658 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_9760_3exon_9760_3Tribonema minus UTEX_B_3156 exonContig_81 238404..238692 -
exon_9760_2exon_9760_2Tribonema minus UTEX_B_3156 exonContig_81 239304..239547 -
exon_9760_1exon_9760_1Tribonema minus UTEX_B_3156 exonContig_81 240336..240738 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_9760UTR3_9760Tribonema minus UTEX_B_3156 three_prime_UTRContig_81 238404..238410 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_9760CDS_9760Tribonema minus UTEX_B_3156 CDSContig_81 240336..240658 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_9760UTR5_9760Tribonema minus UTEX_B_3156 five_prime_UTRContig_81 240659..240738 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_9760 ID=mRNA_9760|Name=jgi.p|Trimin1|351130|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=936bp|location=Sequence derived from alignment at Contig_81:238404..240738- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
TGCAGTTACGCCTTCCGCCAGTTCTGCTCGTGGCCTTCGGGAGTGCCGGC
CGTGGCGCTCGAGCGTTCTCCACCACCCCGATGTCTCCGGCAAGCACAGT
TGCTGTCGGCAGACCAGCACGGCTGGAGGACGACGAGCGTACAGCGTTGC
TAGCTGCACGCCTCAACTGTTCGTTAGGACAGCAGGAGGCGTGCGCTTTT
CTGCTTGCATATGATGCCAAGGGCCACCTGGGGTTATCTGATGTGTCCAA
CAGCGTGCAGCCTCTGACAGTAGATTTCCTGGAAGGCAAGATGGGCTACA
GAGCTGCGCAGCAAGCAGGGGAGCTGGTGGTGAAAGCTGTGCGCTCCAGC
GGAAAGCCGCCCCCGCTGGTATGGGACCTCACGGCTGGCCTAGGCAGAGA
CAGCTTCGTCATGGCGGGAGCGGGCTGCCGCGTGGTGATGTTCGAGCGAT
CGCCAGTGGTGGCAGCGCTCCTACAAGACGCGCTGGTCAGGCTGGCAGCA
GCGCCCGAGGCGGATGCTCAGCAAGTCGCGAGCCGCATGCAGCTGCATGT
CGCCGACAGCTGCAGCCTCGGCGACGCTTTTCAATTGGAGTGTGAGAGGC
CGGATGTCTGTTTGCTGGACCCCATGTTTCCGCCCAAGACCAAGAAGGCG
CTAGTGAAGAAGGACATGCAGGTCCTGCAAAGCCTCTTCCAGCAGGGAGT
CGCCAACAGCGCCACAAACACAGATGACGACGCAGCAAAGCTATTCGCTA
CAGCTGCAGCATTCGCTCGGTCCAAGGTGGTTGTGAAACGTCCCATTAAG
GGGGACACTCTAGTGCCTGTGCCAAAACCCACACACTCGTTGCGCGGGCG
TAGCAATAGGTTTGATGTTTACGCGGCCGGCCCTGTGCTCTCTAAAGCTT
TGAGCAAGAGGAATGGGCATGACAAATGATACTCCG
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protein sequence of jgi.p|Trimin1|351130

>Trimin1|351130|estExt_Genemark1.C_Ctg_810040 ID=Trimin1|351130|estExt_Genemark1.C_Ctg_810040|Name=jgi.p|Trimin1|351130|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=283bp
MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHL
GLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDL
TAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVA
SRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQ
SLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKP
THSLRGRSNRFDVYAAGPVLSKALSKRNGHDK*
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mRNA from alignment at Contig_81:238404..240738-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9760 ID=mRNA_9760|Name=jgi.p|Trimin1|351130|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2335bp|location=Sequence derived from alignment at Contig_81:238404..240738- (Tribonema minus UTEX_B_3156 )
TGCAGTTACGCCTTCCGCCAGTTCTGCTCGTGGCCTTCGGGAGTGCCGGC CGTGGCGCTCGAGCGTTCTCCACCACCCCGATGTCTCCGGCAAGCACAGT TGCTGTCGGCAGACCAGCACGGCTGGAGGACGACGAGCGTACAGCGTTGC TAGCTGCACGCCTCAACTGTTCGTTAGGACAGCAGGAGGCGTGCGCTTTT CTGCTTGCATATGATGCCAAGGGCCACCTGGGGTTATCTGATGTGTCCAA CAGCGTGCAGCCTCTGACAGTAGATTTCCTGGAAGGCAAGATGGGCTACA GAGCTGCGCAGCAAGCAGGGGAGCTGGTGGTGAAAGCTGTGCGCTCCAGC GGAAAGCCGCCCCCGCTGGTATGGGACCTCACGGCTGGCCTAGGCAGAGA CAGGTAAGGGACAGACAGCATTGTGGCTGTCAGTGTCGCAGCTCTGATAT GTTCTTGCTTGTGCCAGGCCGCAGCAAATGCGTTTATCGCAGCAGCTGTC GATCATGCACTGCGCATTACTGCACGCCACCTGTGATCTGTTTCTAGATG TCATCCGCTGCCGACACCTGAGGCCCTGGTCAAATCTGCAACATGGCAAC ACTGCATAAGTGCCTCATGTCGCCTGGCTATGCGACTTCACAGACGTGTG CTGATGTAAACTGCTCACCCATCCCCACAGCTTCTAACAGAAGACCATAA CCTAGCTTACAGACATGCTGAGATTCCGAGAGGTCTAGCTGCACTTGGGG CTGTTCTTGGCATATGCCTCCTGTATCGTGAACTACGCGTCGTCCCTTTA GTTAAAACTTGGGGTGACTGTGCTGAGCACGCATGTTCAGCAGCGTCGTC CATTGCAGCACCTCAGCCCCTTCTTCAGCCCCCTCCCCTACCCCGTACGT TCCCCACATGCATTCGTGTGTCGTAATGAGTGTGGTGTTTGATCTGTCAA CATGATACACTTATGATGGCCTACCGCAGTTTCACTGGCGCAAGTCACTT AGTGGTGTCATCGTACTATTACCTGATGAATGCAGAAGTCACCAGGTGAT ATGCATGCCACACTGGGTTAACACCAACCAGACCGCATTCTGTGCTGACG CGAATTGGCAATTGCCCCCCCCTACGTTGGTCACATCCTCACAGAGTCGT ACTGCTGACACGCCGCAGTTACTTGTGCCGCGTTTCCGCAGCTTCGTCAT GGCGGGAGCGGGCTGCCGCGTGGTGATGTTCGAGCGATCGCCAGTGGTGG CAGCGCTCCTACAAGACGCGCTGGTCAGGCTGGCAGCAGCGCCCGAGGCG GATGCTCAGCAAGTCGCGAGCCGCATGCAGCTGCATGTCGCCGACAGCTG CAGCCTCGGCGACGCTTTTCAATTGGAGTGTGAGAGGCCGGATGTCTGTT TGCTGGACCCCATGTTTCCGCCCAAGACCAAGAAGGTGAGGGTTCCCTGA GCAGTGCTGCAGCATGGCTCAGCAATCACAGTGATCCTTGCCTTCAAAAA CACCATGTTTGCATTGCCTGTTGTCATCGTGTGTACATGCTGTCGCGTGC GGCGCAGCCAGCGGCAGACTTGCTGGGATTGTGAGCAGACGGAGTGGCCG TCATGGCGCAAGTGCTATCAGCAGCCTCGGCTTGCTTCCCTTGGGGCCTC TATGTCAAGCATTGATGTGTGCAAGCAATGGGGCACAATCAGCACATGCG TGAATTCTGTGCCACCAAACAACATTATTTGCAACGCCCGCAGCAGTGCT CAGTCTCCATTCCTGCTTCAACCGCTCCAGCAGCATTCATGGCAAGGTCA GCGTGCCTGCTTAGTCATTTGGTCATATGCGTCATCAAGTCATGAGTGGC GCAAGGGCCAAATAGCATCGTACTATAGATGCACAATGCGACGGTACTGT ATACTTCGAAGTATACAGTACCGTCGCATTGTGCGAAGTAGTTGTCACGC GTGGTGGCACCAAAAAAACTTTGAACTTGCACGAATTTAGTACCGCCTCC ATAATGAACAACTTCTCTGCCTGCTGCCATGCTGCGTGCTTGCCAGGCGC TAGTGAAGAAGGACATGCAGGTCCTGCAAAGCCTCTTCCAGCAGGGAGTC GCCAACAGCGCCACAAACACAGATGACGACGCAGCAAAGCTATTCGCTAC AGCTGCAGCATTCGCTCGGTCCAAGGTGGTTGTGAAACGTCCCATTAAGG GGGACACTCTAGTGCCTGTGCCAAAACCCACACACTCGTTGCGCGGGCGT AGCAATAGGTTTGATGTTTACGCGGCCGGCCCTGTGCTCTCTAAAGCTTT GAGCAAGAGGAATGGGCATGACAAATGATACTCCG
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Coding sequence (CDS) from alignment at Contig_81:238404..240738-

>mRNA_9760 ID=mRNA_9760|Name=jgi.p|Trimin1|351130|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=849bp|location=Sequence derived from alignment at Contig_81:238404..240738- (Tribonema minus UTEX_B_3156 )
ATGTCTCCGGCAAGCACAGTTGCTGTCGGCAGACCAGCACGGCTGGAGGA
CGACGAGCGTACAGCGTTGCTAGCTGCACGCCTCAACTGTTCGTTAGGAC
AGCAGGAGGCGTGCGCTTTTCTGCTTGCATATGATGCCAAGGGCCACCTG
GGGTTATCTGATGTGTCCAACAGCGTGCAGCCTCTGACAGTAGATTTCCT
GGAAGGCAAGATGGGCTACAGAGCTGCGCAGCAAGCAGGGGAGCTGGTGG
TGAAAGCTGTGCGCTCCAGCGGAAAGCCGCCCCCGCTGGTATGGGACCTC
ACGGCTGGCCTAGGCAGAGACAGCTTCGTCATGGCGGGAGCGGGCTGCCG
CGTGGTGATGTTCGAGCGATCGCCAGTGGTGGCAGCGCTCCTACAAGACG
CGCTGGTCAGGCTGGCAGCAGCGCCCGAGGCGGATGCTCAGCAAGTCGCG
AGCCGCATGCAGCTGCATGTCGCCGACAGCTGCAGCCTCGGCGACGCTTT
TCAATTGGAGTGTGAGAGGCCGGATGTCTGTTTGCTGGACCCCATGTTTC
CGCCCAAGACCAAGAAGGCGCTAGTGAAGAAGGACATGCAGGTCCTGCAA
AGCCTCTTCCAGCAGGGAGTCGCCAACAGCGCCACAAACACAGATGACGA
CGCAGCAAAGCTATTCGCTACAGCTGCAGCATTCGCTCGGTCCAAGGTGG
TTGTGAAACGTCCCATTAAGGGGGACACTCTAGTGCCTGTGCCAAAACCC
ACACACTCGTTGCGCGGGCGTAGCAATAGGTTTGATGTTTACGCGGCCGG
CCCTGTGCTCTCTAAAGCTTTGAGCAAGAGGAATGGGCATGACAAATGA
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