Trimin1|351130|estExt_Genemark1.C_Ctg_810040 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351130
Unique NameTrimin1|351130|estExt_Genemark1.C_Ctg_810040
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length283
Homology
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A836C901_9STRA (Ribosomal RNA small subunit methyltransferase J n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C901_9STRA)

HSP 1 Score: 547 bits (1409), Expect = 2.010e-196
Identity = 282/282 (100.00%), Postives = 282/282 (100.00%), Query Frame = 0
Query:    1 MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALSKRNGHDK 282
            MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALSKRNGHDK
Sbjct:    1 MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALSKRNGHDK 282          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A7S3XWK9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XWK9_HETAK)

HSP 1 Score: 172 bits (437), Expect = 5.790e-49
Identity = 98/233 (42.06%), Postives = 138/233 (59.23%), Query Frame = 0
Query:   34 QQEACAFLLAYDAKGHLGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLEC-ERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYA 265
            + +  A+ L ++ +G LG+   +    PL VDF  GK+GYR  +   E + KAV+      P+VWD+TAGLGRDSF++A AGCRV M ERSPV+ ++L D L RL    +  ++++ S + L + DS  +  A  +     P V  LDPMFP K+KKAL KKDMQ+LQ L   G+  +    +++   LF  A      +VVVKRP KG  L   P P+  L G++NRFDVY+
Sbjct:   49 KDQGYAYSLQFNNEGALGIHCHTAKFSPLYVDFTSGKLGYRGCRPEVEQIYKAVQLKDTRTPVVWDMTAGLGRDSFILACAGCRVHMLERSPVIGSILLDGLERLGKDEDQQSKEIRSLLSLSIGDSTKMQMASVINTVPEPQVVYLDPMFPAKSKKALAKKDMQILQGLLGHGIDQAEKEEEEE--NLFNVALRLCSRRVVVKRPAKGPPLAGRP-PSFVLPGKTNRFDVYS 278          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A0G4GL10_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GL10_VITBC)

HSP 1 Score: 153 bits (387), Expect = 9.680e-41
Identity = 111/270 (41.11%), Postives = 146/270 (54.07%), Query Frame = 0
Query:   35 QEACAFLLAY-DAKGHLGLSDVSNSVQP-LTVDFLEGKMGYRAA-----QQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQL-----------------------HVADSCSL---GDAFQ-----LECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRS--NRFDVY 264
            Q  C+FLL Y  + GHL L    +SV+  L+VD++ G++G R       Q   E+V KAV S+    P VWD+TAGLGRD+ V+A AGC V M ER P +AALL+D + RL    +A+ +  A    +                       H  DS  L   GD  +     +  ERPDVC LDPMFPP+TK A V+KD+++LQ L         ++TD D   LF TA    R +VVVKRP  G  L+ V +P+ S+RGR   NRFDVY
Sbjct:   80 QSECSFLLEYRSSDGHLTLRRRGDSVRSALSVDYVGGRLGRRLVGVSRGQGPREMVAKAVTSAKVKAPCVWDMTAGLGRDAAVLAAAGCTVRMLERHPGLAALLEDGVQRLHRHTDANTRPAADSQGIFLDGTPSAALVPGPGFSKRLLGCHCMDSSGLIKPGDLQRDVPSWMTDERPDVCYLDPMFPPRTKSAEVRKDLRLLQDLLGH------SDTDADHEMLFRTALRLCRWRVVVKRPASGPPLLGV-QPSMSVRGRDTINRFDVY 342          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A3A6NAP7_9DELT (Ribosomal RNA small subunit methyltransferase J n=1 Tax=Desulfobulbus sp. TaxID=895 RepID=A0A3A6NAP7_9DELT)

HSP 1 Score: 150 bits (380), Expect = 1.350e-40
Identity = 110/277 (39.71%), Postives = 144/277 (51.99%), Query Frame = 0
Query:    3 PASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHLGLSDVSNS--VQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY---------AAGP 268
            P  +VA   PA     +R   LAA L   L   +    LL    + HL L    N      + V+F+ GK GYR  Q   E++++AV    K P  V D T GLGRD+F++A  GC V + ER PV+AALL D L R    PE    + A+R+ L +ADS  +        E+ DV  LDPMFPP++K A VKKD+++LQ L         T  ++D   L A A   A ++VVVKRP KG   +P P P+HS  G + RFDVY         AAGP
Sbjct:    8 PRISVACSLPALRAQADR---LAASLGLRLADDQTGTDLLLRLTERHLELLSPGNRELTGAVFVEFVVGKAGYRRRQGGREMLLRAVGCKAKQPRKVLDATGGLGRDAFILADHGCTVRVVERHPVIAALLADGLRRALGHPETG--EAAARITLTLADSRHILADMARTGEQLDVVYLDPMFPPRSKSAKVKKDLRILQLL---------TGPEEDGGTLLAAALQTAAARVVVKRP-KGAPALPGPAPSHSHAGATTRFDVYLRPAGGGRPAAGP 269          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A1J5R019_9ZZZZ (Ribosomal RNA small subunit methyltransferase J n=1 Tax=mine drainage metagenome TaxID=410659 RepID=A0A1J5R019_9ZZZZ)

HSP 1 Score: 150 bits (378), Expect = 1.840e-40
Identity = 94/206 (45.63%), Postives = 127/206 (61.65%), Query Frame = 0
Query:   62 LTVDFLEGKMGYRAAQQAG--ELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAA-PEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 264
            + VDF+ G +GYR     G  + + KAV     PPPLV D TAGLGRD+F++A  G RV++ ER+P V ALL D L R AAA PE  A  +++RM L   D+ ++  A     ERPDV L+DPM PP+   ALVKKDM++L+ L            D DAA+L A A A A  +VV+K P++ D L  +PKP+H + G+S R+DV+
Sbjct:   44 VVVDFVGGALGYRHRHGGGKGQALHKAVGFGKGPPPLVADATAGLGRDAFLLAAEGARVILIERAPAVQALLADGLARAAAAGPEYAA--ISARMTLIRGDARAVLPALP---ERPDVVLVDPMHPPRGNSALVKKDMRLLREL---------VGADPDAAELMAAALATAVKRVVLKWPLRADFLPGLPKPSHQILGKSTRYDVF 235          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: UPI0003745CEA (class I SAM-dependent methyltransferase n=1 Tax=Dasania marina TaxID=471499 RepID=UPI0003745CEA)

HSP 1 Score: 150 bits (378), Expect = 2.160e-40
Identity = 92/216 (42.59%), Postives = 127/216 (58.80%), Query Frame = 0
Query:   50 LGLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYA 265
            LG+ ++++   P++VDF  G   +R     GEL+VKA+  S +  P V D+TAGLGRDSFV+A  G  V M ERSP+VA+LL D L R       + Q +A RMQL   ++     A   E + PD+  +DPMFPP  K ALVKKDM+V  ++            + D ++L ATA A AR +VVVKRP K   L    +P+ SL G++ RFD+Y+
Sbjct:   51 LGVKELASKAGPVSVDFTSGTAAHRRNMGGGELIVKAMGGSKQNRPSVVDITAGLGRDSFVLASWGFTVQMLERSPIVASLLADGLRRAQHCENFEVQDIAGRMQLWQGEAQDYLVALSDE-QLPDIIYMDPMFPPSKKSALVKKDMRVFHAI---------VGKEQDGSELLATARAKARHRVVVKRPKKSAYLADQ-QPSFSLAGKAVRFDIYS 255          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: F3KF75_9GAMM (Ribosomal RNA small subunit methyltransferase J n=1 Tax=gamma proteobacterium IMCC2047 TaxID=434085 RepID=F3KF75_9GAMM)

HSP 1 Score: 150 bits (378), Expect = 2.610e-40
Identity = 91/206 (44.17%), Postives = 121/206 (58.74%), Query Frame = 0
Query:   61 PLTVDFLEGKMGYRA--AQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 264
            P+ +DF+ G +G+R   +  A ELV  AV +     P V D TAGLGRD+F++A  GC V+M ERSPVVA +L+DAL R    PE     V +RMQL+ AD+C    A   E + P+V  LDPMFP ++K A VKK+M++LQ L            D D  +LF TA   A  +VVVKRP     +  + KP H + G+S RFD+Y
Sbjct:   70 PIVIDFVGGALGFRGKHSPHAKELVANAVGAKAGHTPTVLDATAGLGRDAFILASRGCSVIMLERSPVVALMLEDALRRAQLDPEVS--PVTARMQLYQADACQFMTALSSE-DYPEVVYLDPMFPERSKSASVKKEMRLLQQLL---------GADMDTLELFETALTVATRRVVVKRPKLAPCISEL-KPHHVVEGKSGRFDIY 262          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A831QLE4_9DELT (Ribosomal RNA small subunit methyltransferase J n=4 Tax=Bacteria TaxID=2 RepID=A0A831QLE4_9DELT)

HSP 1 Score: 150 bits (380), Expect = 3.380e-40
Identity = 96/227 (42.29%), Postives = 128/227 (56.39%), Query Frame = 0
Query:   61 PLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVYAAGPVLSKALS-----KRNGHDK 282
            P+  +F++G  GYR  +   E++++AV      PP V D T G+GRD+F++AG GC V +FER+PVVAALL+D L+R AA+PE   +  A+R+ L  ADS    +       + DV  LDPMFP +TK A VKK++Q+LQ L            DDD  +L A A   AR++VVVKRP     L    KP+H L G + RFDVY   P    A       K  GH K
Sbjct:   71 PVWAEFVKGPAGYRRRRGGREMLIRAVGVKQDRPPSVLDATGGMGRDAFILAGCGCAVHIFERNPVVAALLRDGLLRAAASPET--RDSAARIHLVAADSRKFLENMTNPGGKIDVVYLDPMFPGRTKSARVKKELQILQLL---------VGGDDDTEQLLAAALNAARNRVVVKRPKSAPPLAGR-KPSHCLSGTTTRFDVYITIPAEVYAEDRGRTLKNPGHGK 285          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A2K9LLM3_9GAMM (Ribosomal RNA small subunit methyltransferase J n=1 Tax=Ketobacter alkanivorans TaxID=1917421 RepID=A0A2K9LLM3_9GAMM)

HSP 1 Score: 148 bits (373), Expect = 1.050e-39
Identity = 96/204 (47.06%), Postives = 120/204 (58.82%), Query Frame = 0
Query:   61 PLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 264
            P+TVDF+ GK G+R  +   E++VKAV    K P  V D TAGLGRDSF++A AG  V   ER P +A LL D L R   +PE  A  VA R+QL    + S+  A   E ERPDV  LDPMFP +TK ALVKK+M++ + +            D DA  L   A   AR +VVVKRP K D+ V   KP + L G+S+RFDVY
Sbjct:   64 PVTVDFIHGKTGFRFMRAQHEMIVKAVAGRSKDPLRVMDATAGLGRDSFILAAAGFAVTAIERHPAIACLLADGLDRARYSPEGAA--VAERIQLQWGVAHSIL-AQLAESERPDVVYLDPMFPERTKHALVKKEMRLFRDV---------VGDDMDADALMEIALEVARKRVVVKRPRKADS-VAGRKPGYQLLGKSSRFDVY 254          
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Match: A0A3B0V7D3_9ZZZZ (16S rRNA (Guanine(1516)-N(2))-methyltransferase n=2 Tax=root TaxID=1 RepID=A0A3B0V7D3_9ZZZZ)

HSP 1 Score: 148 bits (373), Expect = 1.400e-39
Identity = 89/204 (43.63%), Postives = 123/204 (60.29%), Query Frame = 0
Query:   61 PLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDLTAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVASRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQSLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKPTHSLRGRSNRFDVY 264
            P+  +F++G  GYR  +   E++++A       PP V D T G+GRD+F++AG GC V +FER+PVVAALL+D L+R AA+PE   ++ A R+ L  ADS    +    + +  DV  LDPMFP +TK ALVKK++Q+LQ L            +DD  +L A A   AR++VVVKRP     L    KP+H L G + RFDVY
Sbjct:   73 PVWAEFVKGPAGYRRRRGGREMLIRAAGVKHDRPPSVLDATGGMGRDAFLLAGCGCTVHIFERNPVVAALLRDGLLRAAASPET--RESAERIHLVAADSRKFLENMTNQGKDIDVVYLDPMFPERTKSALVKKELQILQLL---------VGGEDDTEQLLAAALNAARNRVVVKRPKTAPPLAGR-KPSHCLIGTTTRFDVY 264          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351130 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C901_9STRA2.010e-196100.00Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A7S3XWK9_HETAK5.790e-4942.06Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A0G4GL10_VITBC9.680e-4141.11Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A3A6NAP7_9DELT1.350e-4039.71Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A1J5R019_9ZZZZ1.840e-4045.63Ribosomal RNA small subunit methyltransferase J n=... [more]
UPI0003745CEA2.160e-4042.59class I SAM-dependent methyltransferase n=1 Tax=Da... [more]
F3KF75_9GAMM2.610e-4044.17Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A831QLE4_9DELT3.380e-4042.29Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A2K9LLM3_9GAMM1.050e-3947.06Ribosomal RNA small subunit methyltransferase J n=... [more]
A0A3B0V7D3_9ZZZZ1.400e-3943.6316S rRNA (Guanine(1516)-N(2))-methyltransferase n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilyGENE3D3.40.50.150Vaccinia Virus protein VP39coord: 64..277
e-value: 2.0E-63
score: 215.5
IPR029063S-adenosyl-L-methionine-dependent methyltransferase superfamilySUPERFAMILY53335S-adenosyl-L-methionine-dependent methyltransferasescoord: 17..265
IPR007536Ribosomal RNA small subunit methyltransferase JPFAMPF04445SAM_MTcoord: 31..265
e-value: 1.2E-59
score: 201.6
IPR007536Ribosomal RNA small subunit methyltransferase JPANTHERPTHR36112RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE Jcoord: 26..266
IPR007536Ribosomal RNA small subunit methyltransferase JHAMAPMF_0152316SrRNA_methyltr_Jcoord: 7..267
score: 29.954557
NoneNo IPR availableCDDcd02440AdoMet_MTasescoord: 97..185
e-value: 2.14474E-5
score: 40.8763

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_81contigContig_81:238411..240658 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351130mRNA_9760Tribonema minus UTEX_B_3156 mRNAContig_81 238404..240738 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351130|estExt_Genemark1.C_Ctg_810040 ID=Trimin1|351130|estExt_Genemark1.C_Ctg_810040|Name=jgi.p|Trimin1|351130|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=283bp
MSPASTVAVGRPARLEDDERTALLAARLNCSLGQQEACAFLLAYDAKGHL
GLSDVSNSVQPLTVDFLEGKMGYRAAQQAGELVVKAVRSSGKPPPLVWDL
TAGLGRDSFVMAGAGCRVVMFERSPVVAALLQDALVRLAAAPEADAQQVA
SRMQLHVADSCSLGDAFQLECERPDVCLLDPMFPPKTKKALVKKDMQVLQ
SLFQQGVANSATNTDDDAAKLFATAAAFARSKVVVKRPIKGDTLVPVPKP
THSLRGRSNRFDVYAAGPVLSKALSKRNGHDK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029063SAM-dependent_MTases_sf
IPR00753616SrRNA_methylTrfase_J