mRNA_11773 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	jgi.p\|Trimin1\|351102
Unique Name	mRNA_11773
Type	mRNA
Organism	Tribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )

Homology

[Close]

BLAST of jgi.p|Trimin1|351102 vs. uniprot
Match: A0A836CLL4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLL4_9STRA)

HSP 1 Score: 693 bits (1788), Expect = 4.540e-249
Identity = 380/406 (93.60%), Postives = 386/406 (95.07%), Query Frame = 1

Query:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALQDKIGAMAGSMQDVMAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRASKLHDVLARTAVYVDQK------------PNAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT*GGGPLSLRERGPMAAAVTREAAEVWGLTR 1182
            MSGESGESAEQATENPVDISDRLERF+NSVEQRLGAL+DKIGAMAGSMQDV+AQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGV TTLPIKLTGGQR SKLHDVLARTAVYVDQK            P AFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTF+SEM VCEVMLAKFEMLVVHQEGVTISDADLAAIQGAI SDLDEWTSNLDA+STSLLQHH+LAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNP P NVVPGPCKYRHSDT GGGPLSLRERGPMAAAVTREAAEVWGLTR
Sbjct:    1 MSGESGESAEQATENPVDISDRLERFINSVEQRLGALEDKIGAMAGSMQDVVAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVLTTLPIKLTGGQRVSKLHDVLARTAVYVDQKVANMLWDVSNLQPIAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFVSEMAVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIQSDLDEWTSNLDAMSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPAPCNVVPGPCKYRHSDTKGGGPLSLRERGPMAAAVTREAAEVWGLTR 406

[Close]

BLAST of jgi.p|Trimin1|351102 vs. uniprot
Match: A0A835YJA4_9STRA (Uncharacterized protein n=4 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJA4_9STRA)

HSP 1 Score: 674 bits (1739), Expect = 1.860e-243
Identity = 364/364 (100.00%), Postives = 364/364 (100.00%), Query Frame = 1

Query:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALQDKIGAMAGSMQDVMAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRASKLHDVLARTAVYVDQKPNAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT 1092
            MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALQDKIGAMAGSMQDVMAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRASKLHDVLARTAVYVDQKPNAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT
Sbjct:    1 MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALQDKIGAMAGSMQDVMAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRASKLHDVLARTAVYVDQKPNAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT 364

[Close]

BLAST of jgi.p|Trimin1|351102 vs. uniprot
Match: A0A836CHX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHX2_9STRA)

HSP 1 Score: 425 bits (1092), Expect = 2.520e-146
Identity = 235/243 (96.71%), Postives = 236/243 (97.12%), Query Frame = 1

Query:  376 PNAFSFRDPATRSGKATARSYQALYTGFKLMRAAL--AELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP--YGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT 1092
            P AFSFRDPATRSGKATARSYQALYTGFKLMRAAL  AELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHH+LAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCP  YG CWVWWRHVKEQNPVP NVVPGPCKYRHSDT
Sbjct:   38 PIAFSFRDPATRSGKATARSYQALYTGFKLMRAALRLAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHRLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPKAYGGCWVWWRHVKEQNPVPCNVVPGPCKYRHSDT 280

[Close]

BLAST of jgi.p|Trimin1|351102 vs. uniprot
Match: A0A836CCV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CCV7_9STRA)

HSP 1 Score: 323 bits (828), Expect = 5.250e-96
Identity = 210/351 (59.83%), Postives = 219/351 (62.39%), Query Frame = 1

Query:  130 MAGSMQDVMAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPIKLTGGQRASKLHDVLARTAVYVDQKPNAFSFRDPATRSGKATARSYQALYTGFKLMRAALAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEALDVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSGXXXXXXXXXXXXXXXXXGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVPGNVVPGPCKYRHSDT*GGGPLSLRERGPMAAAVTREAAEVWGLTR 1182
            MAGS+QDV+AQEVQLQVEESSRSTSSEDTRERK LMENEAYR HLLLRCGVPTTLPIKLTGGQR SKLHDVLARTAV                  GKATARSYQALY G KLMRA   ELIGLGLTELPQGSRTFMS+MEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDL    +  DALST LLQHH+L PPFGSGEALDVPDIPTVA      AL+V                          P+                                          RH+                       GGGPLSL+ERGPMAAAVTR AAEVWGLTR
Sbjct:    1 MAGSLQDVVAQEVQLQVEESSRSTSSEDTRERKLLMENEAYRCHLLLRCGVPTTLPIKLTGGQRVSKLHDVLARTAV------------------GKATARSYQALYKGVKLMRA---ELIGLGLTELPQGSRTFMSKMEVCEVMLAKFEMLVVHQEGVTISDADLAAIQGAIHSDLTSGPAT-DALSTILLQHHRLPPPFGSGEALDVPDIPTVA------ALQVP-------------------------PL------------------------------------------RHL-----------------------GGGPLSLQERGPMAAAVTRVAAEVWGLTR 233

The following BLAST results are available for this feature:

BLAST of jgi.p|Trimin1|351102 vs. uniprot

BLAST of jgi.p|Trimin1|351102 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4


Match Name	E-value	Identity	Description
A0A836CLL4_9STRA	4.540e-249	93.60	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A835YJA4_9STRA	1.860e-243	100.00	Uncharacterized protein n=4 Tax=Tribonema minus Ta...	[more]
A0A836CHX2_9STRA	2.520e-146	96.71	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]
A0A836CCV7_9STRA	5.250e-96	59.83	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Contig_80	contig	Contig_80:614119..615341 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
OGS1.0 of Tribonema minus UTEX_B_3156	2021-06-17

Properties


Property Name	Value
ProteomeId	Trimin1\|351102\|estExt_Genemark1.C_Ctg_800063
Hectar predicted targeting category	other localisation
TranscriptId	351424
Track	FilteredModels1
ProteinId	351102

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351102	gene_11773	Tribonema minus UTEX_B_3156	gene	Contig_80 614119..615341 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
exon_11773_1	exon_11773_1	Tribonema minus UTEX_B_3156	exon	Contig_80 614119..614493 +
exon_11773_2	exon_11773_2	Tribonema minus UTEX_B_3156	exon	Contig_80 614535..615341 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
CDS_11773	CDS_11773	Tribonema minus UTEX_B_3156	CDS	Contig_80 614119..614493 +

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
UTR3_11773	UTR3_11773	Tribonema minus UTEX_B_3156	three_prime_UTR	Contig_80 615255..615341 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
jgi.p\|Trimin1\|351102	Trimin1\|351102\|estExt_Genemark1.C_Ctg_800063	Tribonema minus UTEX_B_3156	polypeptide	Contig_80 614119..615254 +

Sequences

The following sequences are available for this feature:

mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at Contig_80:614119..615341+
coding sequence from alignment at Contig_80:614119..615341+

spliced messenger RNA

>mRNA_11773 ID=mRNA_11773|Name=jgi.p|Trimin1|351102|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1182bp|location=Sequence derived from alignment at Contig_80:614119..615341+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTCGGGTGAGAGTGGGGAATCCGCAGAGCAGGCAACAGAAAACCCCGT
AGATATATCCGATAGGCTCGAGCGCTTCATGAACTCGGTGGAGCAGAGGC
TGGGCGCTCTGCAGGACAAGATTGGAGCCATGGCGGGCTCCATGCAAGAC
GTGATGGCGCAGGAGGTGCAGCTCCAGGTCGAGGAATCTTCGCGATCCAC
GTCTAGTGAGGACACTCGAGAGCGCAAGTCGCTAATGGAGAACGAGGCCT
ACCGTCGCCACCTCCTGCTGCGGTGCGGCGTACCAACCACTCTGCCTATC
AAGCTGACCGGCGGACAACGGGCCAGCAAGCTGCACGACGTCCTGGCTCG
TACAGCGGTGTACGTGGACCAGAAACCGAATGCCTTTTCATTCCGCGATC
CGGCCACTCGCAGCGGCAAGGCGACTGCGAGGTCGTATCAGGCCCTGTAT
ACGGGTTTTAAGCTGATGCGGGCAGCCCTGGCGGAGCTGATCGGGCTCGG
GCTCACGGAGCTTCCGCAGGGCTCGCGGACCTTCATGTCGGAAATGGAGG
TCTGCGAGGTCATGCTCGCAAAGTTTGAGATGCTGGTGGTACACCAGGAA
GGGGTCACGATCTCGGACGCAGATCTGGCGGCCATCCAGGGGGCCATCCA
CTCGGACTTGGACGAGTGGACCAGCAACCTCGACGCGCTGTCGACGAGTC
TGCTCCAGCACCACCAATTGGCCCCCCCCTTTGGGAGCGGCGAGGCACTG
GACGTGCCGGACATCCCGACGGTGGCGTGGACCAACGCAGCTCGCGCGCT
GGAGGTCAACGGGGACATAGCGGCGCGAGCGGTGGCGGCGGCGCGCAAGC
GCAAGTACGACGGCGCATTCCGGGGCGGCGGCAGACCCGTCGGCTCGGGG
GGCGGCGGCGCGGGTGCAGGTGGGGGCGCTGGCGCAGCGGCGGGAGCAGG
AGGCACGCGCTCACAGCCGCGGGGAGCGCCGGCGAACTGCCCTTATGGTG
TTTGCTGGGTGTGGTGGAGGCACGTGAAGGAGCAGAACCCAGTCCCAGGC
AACGTCGTCCCAGGGCCCTGCAAGTACCGCCACTCCGACACCTAGGGGGG
CGGGCCCCTGAGCCTGCGGGAGCGGGGGCCGATGGCGGCAGCGGTGACGA
GGGAGGCAGCGGAGGTGTGGGGCCTTACGCGG

protein sequence of jgi.p|Trimin1|351102

>Trimin1|351102|estExt_Genemark1.C_Ctg_800063 ID=Trimin1|351102|estExt_Genemark1.C_Ctg_800063|Name=jgi.p|Trimin1|351102|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=365bp
MSGESGESAEQATENPVDISDRLERFMNSVEQRLGALQDKIGAMAGSMQD
VMAQEVQLQVEESSRSTSSEDTRERKSLMENEAYRRHLLLRCGVPTTLPI
KLTGGQRASKLHDVLARTAVYVDQKPNAFSFRDPATRSGKATARSYQALY
TGFKLMRAALAELIGLGLTELPQGSRTFMSEMEVCEVMLAKFEMLVVHQE
GVTISDADLAAIQGAIHSDLDEWTSNLDALSTSLLQHHQLAPPFGSGEAL
DVPDIPTVAWTNAARALEVNGDIAARAVAAARKRKYDGAFRGGGRPVGSG
GGGAGAGGGAGAAAGAGGTRSQPRGAPANCPYGVCWVWWRHVKEQNPVPG
NVVPGPCKYRHSDT*

mRNA from alignment at Contig_80:614119..615341+

Legend: exonpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11773 ID=mRNA_11773|Name=jgi.p|Trimin1|351102|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1223bp|location=Sequence derived from alignment at Contig_80:614119..615341+ (Tribonema minus UTEX_B_3156 )
ATGTCGGGTGAGAGTGGGGAATCCGCAGAGCAGGCAACAGAAAACCCCGT
AGATATATCCGATAGGCTCGAGCGCTTCATGAACTCGGTGGAGCAGAGGC
TGGGCGCTCTGCAGGACAAGATTGGAGCCATGGCGGGCTCCATGCAAGAC
GTGATGGCGCAGGAGGTGCAGCTCCAGGTCGAGGAATCTTCGCGATCCAC
GTCTAGTGAGGACACTCGAGAGCGCAAGTCGCTAATGGAGAACGAGGCCT
ACCGTCGCCACCTCCTGCTGCGGTGCGGCGTACCAACCACTCTGCCTATC
AAGCTGACCGGCGGACAACGGGCCAGCAAGCTGCACGACGTCCTGGCTCG
TACAGCGGTGTACGTGGACCAGAAAGTGGCGAACATGCTGTGGTCTCCAA
CGTCTCCAACCTGCAGCCGAATGCCTTTTCATTCCGCGATCCGGCCACTC
GCAGCGGCAAGGCGACTGCGAGGTCGTATCAGGCCCTGTATACGGGTTTT
AAGCTGATGCGGGCAGCCCTGGCGGAGCTGATCGGGCTCGGGCTCACGGA
GCTTCCGCAGGGCTCGCGGACCTTCATGTCGGAAATGGAGGTCTGCGAGG
TCATGCTCGCAAAGTTTGAGATGCTGGTGGTACACCAGGAAGGGGTCACG
ATCTCGGACGCAGATCTGGCGGCCATCCAGGGGGCCATCCACTCGGACTT
GGACGAGTGGACCAGCAACCTCGACGCGCTGTCGACGAGTCTGCTCCAGC
ACCACCAATTGGCCCCCCCCTTTGGGAGCGGCGAGGCACTGGACGTGCCG
GACATCCCGACGGTGGCGTGGACCAACGCAGCTCGCGCGCTGGAGGTCAA
CGGGGACATAGCGGCGCGAGCGGTGGCGGCGGCGCGCAAGCGCAAGTACG
ACGGCGCATTCCGGGGCGGCGGCAGACCCGTCGGCTCGGGGGGCGGCGGC
GCGGGTGCAGGTGGGGGCGCTGGCGCAGCGGCGGGAGCAGGAGGCACGCG
CTCACAGCCGCGGGGAGCGCCGGCGAACTGCCCTTATGGTGTTTGCTGGG
TGTGGTGGAGGCACGTGAAGGAGCAGAACCCAGTCCCAGGCAACGTCGTC
CCAGGGCCCTGCAAGTACCGCCACTCCGACACCTAGGGGGGCGGGCCCCT
GAGCCTGCGGGAGCGGGGGCCGATGGCGGCAGCGGTGACGAGGGAGGCAG
CGGAGGTGTGGGGCCTTACGCGG

Coding sequence (CDS) from alignment at Contig_80:614119..615341+

>mRNA_11773 ID=mRNA_11773|Name=jgi.p|Trimin1|351102|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1095bp|location=Sequence derived from alignment at Contig_80:614119..615341+ (Tribonema minus UTEX_B_3156 )
ATGTCGGGTGAGAGTGGGGAATCCGCAGAGCAGGCAACAGAAAACCCCGT
AGATATATCCGATAGGCTCGAGCGCTTCATGAACTCGGTGGAGCAGAGGC
TGGGCGCTCTGCAGGACAAGATTGGAGCCATGGCGGGCTCCATGCAAGAC
GTGATGGCGCAGGAGGTGCAGCTCCAGGTCGAGGAATCTTCGCGATCCAC
GTCTAGTGAGGACACTCGAGAGCGCAAGTCGCTAATGGAGAACGAGGCCT
ACCGTCGCCACCTCCTGCTGCGGTGCGGCGTACCAACCACTCTGCCTATC
AAGCTGACCGGCGGACAACGGGCCAGCAAGCTGCACGACGTCCTGGCTCG
TACAGCGGTGTACGTGGACCAGAAACCGAATGCCTTTTCATTCCGCGATC
CGGCCACTCGCAGCGGCAAGGCGACTGCGAGGTCGTATCAGGCCCTGTAT
ACGGGTTTTAAGCTGATGCGGGCAGCCCTGGCGGAGCTGATCGGGCTCGG
GCTCACGGAGCTTCCGCAGGGCTCGCGGACCTTCATGTCGGAAATGGAGG
TCTGCGAGGTCATGCTCGCAAAGTTTGAGATGCTGGTGGTACACCAGGAA
GGGGTCACGATCTCGGACGCAGATCTGGCGGCCATCCAGGGGGCCATCCA
CTCGGACTTGGACGAGTGGACCAGCAACCTCGACGCGCTGTCGACGAGTC
TGCTCCAGCACCACCAATTGGCCCCCCCCTTTGGGAGCGGCGAGGCACTG
GACGTGCCGGACATCCCGACGGTGGCGTGGACCAACGCAGCTCGCGCGCT
GGAGGTCAACGGGGACATAGCGGCGCGAGCGGTGGCGGCGGCGCGCAAGC
GCAAGTACGACGGCGCATTCCGGGGCGGCGGCAGACCCGTCGGCTCGGGG
GGCGGCGGCGCGGGTGCAGGTGGGGGCGCTGGCGCAGCGGCGGGAGCAGG
AGGCACGCGCTCACAGCCGCGGGGAGCGCCGGCGAACTGCCCTTATGGTG
TTTGCTGGGTGTGGTGGAGGCACGTGAAGGAGCAGAACCCAGTCCCAGGC
AACGTCGTCCCAGGGCCCTGCAAGTACCGCCACTCCGACACCTAG