mRNA_11762 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351097
Unique NamemRNA_11762
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A836C936_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C936_9STRA)

HSP 1 Score: 848 bits (2190), Expect = 5.230e-303
Identity = 529/529 (100.00%), Postives = 529/529 (100.00%), Query Frame = 1 
Query:    1 MHLPSKGVVCCTLGLVAAVDAFTPIPPSRTHRYSLTDVPTLDINVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAHVASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGIAFRATCCAASCISGGSAPAGCSAVADEHCGKLRRWQHIRSSLRGSSCGSGSAVA 1587
            MHLPSKGVVCCTLGLVAAVDAFTPIPPSRTHRYSLTDVPTLDINVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAHVASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGIAFRATCCAASCISGGSAPAGCSAVADEHCGKLRRWQHIRSSLRGSSCGSGSAVA
Sbjct:    1 MHLPSKGVVCCTLGLVAAVDAFTPIPPSRTHRYSLTDVPTLDINVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAHVASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGIAFRATCCAASCISGGSAPAGCSAVADEHCGKLRRWQHIRSSLRGSSCGSGSAVA 529
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A836CM85_9STRA (RNA polymerase sigma-70 factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM85_9STRA)

HSP 1 Score: 383 bits (983), Expect = 1.710e-122
Identity = 210/382 (54.97%), Postives = 271/382 (70.94%), Query Frame = 1 
Query:   64 FTPIPPSRTHRYSLTDVPTLDINVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSR-LPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQH-HTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAHV 1203
            FT    +   R      PTLD+ V+DPYTGAS VHF++  +LL+KE+EV+LARL+Q+R  W+ VR  LASE  +EPT SEWA + G  G +  +EEFS+ V +GD+AKAA+ISANLRLV+ +AR+HKA  GSR LPLSDLVQEG LGLVKAVEK+DPERGFRFSTY+ +WIRQ I RAV + GRTIRLP H+ D L   +R    L+ ELGR AS++E+A RLG+TV+KLRWL++C+ +EPISLS+Q  + + +RPD ++    +GD+VH D   TPE+Y N  A++EDVDN L  L PR+  VLRMRYG                   LD+GG  E++E++   +G+ ++RVRQIE RAL RLR+L A GDA AEAAR HV
Sbjct:   54 FTASRSATRQRRGSDSPPTLDLTVVDPYTGASYVHFRQAPELLTKEEEVSLARLVQRRIQWEAVRNRLASEFGKEPTLSEWAVAVGFRGGYPLDEEFSQQVAEGDSAKAAMISANLRLVLSLARKHKASQGSRCLPLSDLVQEGILGLVKAVEKYDPERGFRFSTYATWWIRQTIARAVCDIGRTIRLPAHIHDSLRSVQRVGRSLSEELGRTASEEELAQRLGLTVEKLRWLHSCKYSEPISLSLQPGNGSGLRPDKQSLTSTVGDSVH-DTNPTPEEYHNTMAIREDVDNLLSILTPREQTVLRMRYG-------------------LDSGGISETLEAIGVSIGVTRERVRQIERRALDRLRMLGACGDATAEAAREHV 415
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.300e-56
Identity = 130/346 (37.57%), Postives = 197/346 (56.94%), Query Frame = 1 
Query:  127 INVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVT----PEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 1152
            ++ M  Y  + G H     DLL+ ++EV LAR +Q    W+ VR  L  EL R PT +EWAA+ G     +D ++  R +R    AKAA+I +NLRLVI +A+R+ ++  + L + DL QEG+LGLVKAVEKFDPERGFRFSTY+ +WI+Q++ RA+ +  RTIRLPVH+ D L   R+   EL  +LGR  + +E+A+  G+TVDKL++L+   +    ++S +                    +  D I      PE+      M++D+D  L +L  R+  V+RMR+G                   LD+G + +++E +     + ++R+RQIE+RAL +LR
Sbjct:  171 VDTMKDYLKSMGNH-----DLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVG-----VDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNT-LSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRE---TMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFG-------------------LDDG-KAKTLEEIGKRFRVTRERIRQIEARALHKLR 482
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.220e-56
Identity = 125/324 (38.58%), Postives = 191/324 (58.95%), Query Frame = 1 
Query:  187 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDN--KNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 1152
            LL  E+EV LAR +Q    W+ VR  L  +L R PT  EWA+S G     +  +E  R +  G +AK A+IS+NLRLVI +A+R++ +    L L+DL+QEG+LGLV+AVEKFDPE+GF+FSTYS +WI+Q I RA+ +  RTIRLPVH+ DLL   ++   EL   LGR  + +E+A+R+ + ++KLR+L  C +   +S+  Q      +  +  K  +  +GD++  D    P   T    ++ED++  + +L PR+  V+RMR+G  A                     + +++E +     + ++RVRQIE+RAL +LR
Sbjct:  172 LLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVG-----MQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKR---GLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSR-PAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDG-PCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDA--------------------DKPKTLEEIGNVFSVTRERVRQIEARALHKLR 465
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: J7G2H9_9CRYP (RNA-polymerase sigma factor n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G2H9_9CRYP)

HSP 1 Score: 209 bits (533), Expect = 4.750e-56
Identity = 120/323 (37.15%), Postives = 202/323 (62.54%), Query Frame = 1 
Query:  187 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRP-DNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 1152
            LL  E+E+ LAR I Q   W+ V+ SL  +LQREPT+SEW A+C       D ++F   + +   AK  +++ANLRLV+ +A+R+   +   + L DL+QEG+LGL++A EKFD E+GF+FSTY+ +W++Q +TRA+ +H RTIRLPVH+ D ++  R+T   L  E+GR+ +++E+A+++ ++V+KLR   +  Q+   +LS++      RP  N ++   + D +  D   +PE++     +++D++N + SL PR+  V+RMRYG                   LD+G R +++E +     + ++RVRQIE++A+++LR
Sbjct:  147 LLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAAC----KVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRY---VNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLR---SVLQSAQPTLSLE------RPLKNDDDASQLSDFIEADQ-ESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYG-------------------LDDG-RIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 432
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A9BK56_HEMAN (RpoD n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BK56_HEMAN)

HSP 1 Score: 209 bits (533), Expect = 4.750e-56
Identity = 120/323 (37.15%), Postives = 202/323 (62.54%), Query Frame = 1 
Query:  187 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRP-DNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 1152
            LL  E+E+ LAR I Q   W+ V+ SL  +LQREPT+SEW A+C       D ++F   + +   AK  +++ANLRLV+ +A+R+   +   + L DL+QEG+LGL++A EKFD E+GF+FSTY+ +W++Q +TRA+ +H RTIRLPVH+ D ++  R+T   L  E+GR+ +++E+A+++ ++V+KLR   +  Q+   +LS++      RP  N ++   + D +  D   +PE++     +++D++N + SL PR+  V+RMRYG                   LD+G R +++E +     + ++RVRQIE++A+++LR
Sbjct:  144 LLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAAC----KVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRY---VNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLR---SVLQSAQPTLSLE------RPLKNDDDASQLSDFIEADQ-ESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYG-------------------LDDG-RIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 429
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: Q8S9D0_GUITH (RNA polymerase sigma factor n=1 Tax=Guillardia theta TaxID=55529 RepID=Q8S9D0_GUITH)

HSP 1 Score: 209 bits (533), Expect = 5.320e-56
Identity = 120/323 (37.15%), Postives = 202/323 (62.54%), Query Frame = 1 
Query:  187 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRP-DNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 1152
            LL  E+E+ LAR I Q   W+ V+ SL  +LQREPT+SEW A+C       D ++F   + +   AK  +++ANLRLV+ +A+R+   +   + L DL+QEG+LGL++A EKFD E+GF+FSTY+ +W++Q +TRA+ +H RTIRLPVH+ D ++  R+T   L  E+GR+ +++E+A+++ ++V+KLR   +  Q+   +LS++      RP  N ++   + D +  D   +PE++     +++D++N + SL PR+  V+RMRYG                   LD+G R +++E +     + ++RVRQIE++A+++LR
Sbjct:  144 LLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAAC----KVSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRY---VNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLR---SVLQSAQPTLSLE------RPLKNDDDASQLSDFIEADQ-ESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYG-------------------LDDG-RIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 429
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A2T2S314_9CYAN (RNA polymerase sigma factor SigA n=1 Tax=Cyanobacteria bacterium QS_8_64_29 TaxID=1919134 RepID=A0A2T2S314_9CYAN)

HSP 1 Score: 205 bits (521), Expect = 2.490e-55
Identity = 127/349 (36.39%), Postives = 200/349 (57.31%), Query Frame = 1 
Query:  115 PTLDINVMDPYTGAS-GVHFQEVSD--LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 1152
            P  D +   PYT  S  ++ QE+    LL  ++E+ LAR I +    +  R  LA  L+REPT  EWAA  G     +   EF R +     AK  ++ +NLRLV+ +A+++   +   L   DL+QEG+LGL++A EKFD E+G++FSTY+ +WIRQ ITRA+ +  RTIRLPVH+ + +++ ++T   L+ ELGR  S++E+A R+ +T++KLR++    Q  PISL          P  K E   +GD +  D   +PED  +   ++ED+++ L +L PR+  VLR+RYG                       GR +++E +     + ++R+RQIE++AL++LR
Sbjct:   71 PAEDRDETQPYTEDSIRLYLQEIGRVRLLRADEEIELARQIAELLELERSRDELADALEREPTQQEWAAEAG-----MPLAEFQRYLHTRRRAKEKMVQSNLRLVVSIAKKY---MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQELGRKPSEEEIATRMEMTIEKLRFIAKSAQL-PISLET--------PIGKEEDSRLGDFIEADG-ESPEDEVSKNLLREDLEDVLETLSPRERDVLRLRYGM--------------------QDGRMKTLEEIGQFFNVTRERIRQIEAKALRKLR 381
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A7S3EI06_9RHOD (Hypothetical protein n=11 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EI06_9RHOD)

HSP 1 Score: 207 bits (526), Expect = 3.350e-55
Identity = 127/331 (38.37%), Postives = 195/331 (58.91%), Query Frame = 1 
Query:  166 HFQEV--SDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 1152
            + QE+  + LL  E E+ LAR IQ     +  R     ++ R PT +EWA  C      LD  +F + +  G  AK  ++SANLRLV+ +A+++   L   L   DL+QEG++GL+K  EKFD ++GF+FSTY+ +WIRQ+ITRA+ +  R IRLPVHV D +T  R+ +  L  ELGR  S+KE ADR+ + VDKLR++  C ++   +LS++  T    PD+K E   +   +  +   +PE+      ++ED+D+ L +L  R+  V+RMRYG                   LD+G + +++E + TH  + ++R+RQIES+ALK+LR
Sbjct:  162 YLQEIGKTKLLKAEMEIELARSIQMLLGLERTRSEFIEKVGRSPTDAEWAQECD-----LDYSQFKKNLYCGRLAKEKMVSANLRLVVSIAKKY---LNRGLSFQDLIQEGSIGLIKGTEKFDADKGFKFSTYATWWIRQSITRAIADFSRPIRLPVHVNDTITSVRKVSKALEVELGRPPSEKETADRMEIPVDKLRFVLRCARS---TLSLE--TPVGGPDDK-ESTTLASFIEWNG-ESPEEKAEKSLLREDLDSVLGTLNARERDVIRMRYG-------------------LDDG-KAKTLEEIGTHFAVTRERIRQIESKALKKLR 457
[Close]
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: Q98RZ3_GUITH (RNA-polymerase sigma factor n=2 Tax=Guillardia theta TaxID=55529 RepID=Q98RZ3_GUITH)

HSP 1 Score: 206 bits (524), Expect = 4.820e-55
Identity = 120/323 (37.15%), Postives = 199/323 (61.61%), Query Frame = 1 
Query:  187 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRP-DNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 1152
            LL  ++E+ LAR I Q   W+ V+ SL  +L+REPT SEW A+C       D  +F   + +   AK  +++ANLRLV+ +A+R+   +   + L DL+QEG+LGL++A EKFD E+GF+FSTY+ +W++Q +TRA+ +H RTIRLPVH+ D ++  R+T   L  E+GR+ +++E+A R+ ++V+KLR     Q  +P +LS++      RP  N ++   + D +  D   +PE++     +++D++N + SL PR+  V+RMRYG                   LD+G R +++E +     + ++RVRQIE++A+++LR
Sbjct:  127 LLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAAC----KVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRY---VNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKLR--NVLQSAQP-TLSLE------RPLKNDDDTSQLSDFIEADQ-ESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYG-------------------LDDG-RIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 412
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C936_9STRA5.230e-303100.00RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A836CM85_9STRA1.710e-12254.97RNA polymerase sigma-70 factor n=1 Tax=Tribonema m... [more]
A0A7S1B782_9STRA1.300e-5637.57Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2WX55_9STRA2.220e-5638.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
J7G2H9_9CRYP4.750e-5637.15RNA-polymerase sigma factor n=1 Tax=Chroomonas mes... [more]
A9BK56_HEMAN4.750e-5637.15RpoD n=1 Tax=Hemiselmis andersenii TaxID=464988 Re... [more]
Q8S9D0_GUITH5.320e-5637.15RNA polymerase sigma factor n=1 Tax=Guillardia the... [more]
A0A2T2S314_9CYAN2.490e-5536.39RNA polymerase sigma factor SigA n=1 Tax=Cyanobact... [more]
A0A7S3EI06_9RHOD3.350e-5538.37Hypothetical protein n=11 Tax=Rhodosorus marinus T... [more]
Q98RZ3_GUITH4.820e-5537.15RNA-polymerase sigma factor n=2 Tax=Guillardia the... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_80contigContig_80:516741..524238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351097|estExt_Genemark1.C_Ctg_800051
BRITEko00000,ko03021
KEGG koko:K03086
Preferred namesigA
DescriptionSigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
COG categoryK
Max annot lvl1117|Cyanobacteria
EggNOG OGsCOG0568@1|root,COG0568@2|Bacteria,1G0DU@1117|Cyanobacteria,1H89Q@1150|Oscillatoriales
Evalue6.66e-58
Seed ortholog1173029.JH980292_gene3647
Hectar predicted targeting categorychloroplast
TranscriptId351419
TrackFilteredModels1
ProteinId351097
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351097gene_11762Tribonema minus UTEX_B_3156 geneContig_80 516741..524238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351097Trimin1|351097|estExt_Genemark1.C_Ctg_800051Tribonema minus UTEX_B_3156 polypeptideContig_80 516741..523488 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11762_1exon_11762_1Tribonema minus UTEX_B_3156 exonContig_80 516741..516841 +
exon_11762_2exon_11762_2Tribonema minus UTEX_B_3156 exonContig_80 517041..517206 +
exon_11762_3exon_11762_3Tribonema minus UTEX_B_3156 exonContig_80 518142..518378 +
exon_11762_4exon_11762_4Tribonema minus UTEX_B_3156 exonContig_80 519158..519292 +
exon_11762_5exon_11762_5Tribonema minus UTEX_B_3156 exonContig_80 519841..519939 +
exon_11762_6exon_11762_6Tribonema minus UTEX_B_3156 exonContig_80 520800..520904 +
exon_11762_7exon_11762_7Tribonema minus UTEX_B_3156 exonContig_80 521740..521840 +
exon_11762_8exon_11762_8Tribonema minus UTEX_B_3156 exonContig_80 522703..522759 +
exon_11762_9exon_11762_9Tribonema minus UTEX_B_3156 exonContig_80 522869..523072 +
exon_11762_10exon_11762_10Tribonema minus UTEX_B_3156 exonContig_80 523104..524238 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11762CDS_11762Tribonema minus UTEX_B_3156 CDSContig_80 516741..516841 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11762UTR3_11762Tribonema minus UTEX_B_3156 three_prime_UTRContig_80 523489..524238 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11762 ID=mRNA_11762|Name=jgi.p|Trimin1|351097|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2340bp|location=Sequence derived from alignment at Contig_80:516741..524238+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCACCTGCCTTCGAAGGGGGTCGTGTGCTGCACACTGGGGCTGGTGGC
GGCAGTCGACGCCTTTACGCCAATACCGCCATCCAGAACACACCGCTACA
GCTTGACCGATGTACCGACTTTGGACATCAATGTCATGGATCCGTACACC
GGCGCCAGCGGCGTGCACTTCCAGGAGGTGTCAGATCTGCTTAGCAAAGA
GGATGAGGTGGCGCTGGCGCGGCTAATTCAGCAGCGGACGCTGTGGGATA
CCGTGCGGTGCAGCCTGGCATCGGAGCTGCAGCGCGAGCCCACAACCTCA
GAGTGGGCAGCCAGTTGCGGCCGCGGCGGCAGCTGGCTTGATGAGGAGGA
ATTTTCTCGCGCCGTGCGCGACGGCGATGCGGCGAAGGCAGCGCTCATCA
GCGCAAACCTGAGGCTGGTGATCTACGTGGCGCGGCGGCACAAGGCGCAG
CTGGGGTCGCGCCTGCCGCTGTCGGACCTCGTGCAGGAGGGAACGCTGGG
GCTGGTCAAGGCGGTTGAGAAGTTTGACCCGGAGCGGGGGTTTCGCTTCT
CCACGTACTCGGTGTTCTGGATCCGTCAGAACATTACACGCGCAGTGCTC
AACCACGGCAGGACTATCCGGCTGCCAGTGCACGTCCAGGACTTGCTGAC
CAAGACACGGCGCACTGCGTATGAGCTGGCGGCAGAGCTGGGGAGGGCTG
CGAGCAAAAAGGAGGTGGCGGACAGGCTTGGCGTTACGGTGGACAAGCTG
CGGTGGCTGTACGCCTGTCAGCAAAACGAGCCCATCAGCCTCAGCGTGCA
GCACCACACTGCCGCAATACGACCAGACAACAAGAACGAAAAGAGGAACA
TTGGAGACACGGTGCACTGTGACGTCATTGTAACTCCCGAGGACTACACC
AACTTTAGGGCCATGCAGGAGGACGTCGACAACTTCCTGCGCAGCCTGAT
GCCGCGCGACAGCGTCGTCTTGCGCATGCGCTACGGCAGCTGTGCACTAG
TCCTGCTGCCGCGCGACCGCGTCGTCCTGCGCATGCGCTACGGCCTCGAC
AACGGCGGGCGCGGCGAGTCCGTGGAGAGCGTGGCCACTCACCTGGGCAT
CTGCAAGCAGCGCGTGCGCCAGATTGAGAGTCGCGCGCTCAAGCGCTTGC
GACTCCTCAGCGCGCGCGGCGACGCCATCGCGGAGGCAGCGCGCGCGCAC
GTCGCCAGCGGCGGCGGCGCCAGCAGCGGCGGCGGCTCGGCGGCGTCAGC
AGCGGCGGCGGCTCGGCGGCGTCAGCAGCGGCGGCGGCTCGGCGGCGTCA
GCAGCGGCGGCGGCGGCGGCGGCGGCGCCTGTGCTCATGGCAGCAGCGTT
GCGGCGACAACAGCACCATATGTGATGGCTGTTTGCGCTGCCGTCAGCAG
CGGCGGCGGCGGCGACAGCGGCATCGCGTTTCGTGCGACATGTTGCGCTG
CCAGCTGCATCAGCGGCGGCAGCGCACCAGCTGGTTGCAGCGCTGTTGCG
GATGAGCATTGCGGCAAGCTGCGGCGGTGGCAGCACATCCGCAGCTCATT
GCGTGGCAGCAGTTGCGGCAGCGGCAGCGCGGTGGCGTAAGCAGAGGTAG
CAGCAATTTGGGTAGAGGCAGGCGTAGCAGCAGAAGAGCGGGGGGCGGCA
GCAGCGGCATTTGCGGCTGCGCAGCGCCGGCGCCAGCAGCAACACAAGCG
GAAGCAGCAGCAGCAGCAGACGCAGCGGCGGCGCTGGCAGCGGTGGTAAC
ATGGTCGGCAGCGGCGCTCTTGCGGCTGCTAGTACAACCGGCGGAAAACA
ATCACAAGCAGGAGTTCAAGTTCAGCACTTGAAGTGCCACCTGGCAGCCC
TGCGCGGGTGCGCCATTGTGCCACCTTAGTTATGGTGCTAGGCTTCGATG
CACAGCACCCTGTGCACAGGCCAGAGTTCGGCAGGGGGGTTCACTCAACC
TAAGGAGTCTTCAAGCGGCAGCGGCTGTTGCCACTTGCACACACTGTTGG
GCCGTTTCTGCGGACGGTTCTCCCGTTCTGATCAGAACCTGGTCTTTGAT
CCGCAGAAGCATTCGTACCCTGTTGCCCCTTTGTCCAATGTTTCCGGAAG
CACCACTCCAGCTGCAGCAGGGTATTTTCGTACGCAGCAAGTAGCATTGG
TTGACAGTCCAGGGGCGCGGCCGTTGCGATCCACATGGACCAGCATCGCG
GTATGTTTTGACGTTGCGTAACGGTGGCAAGCCACCGTCAAGGGCTGTCA
TGATACCTATACCTACAGTACGCCGTATGGCGCATCGCGTGCAGCCATGC
GCACATCCAAGTTCATGAACAACGCGCAACGTTCACCTCC
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protein sequence of jgi.p|Trimin1|351097

>Trimin1|351097|estExt_Genemark1.C_Ctg_800051 ID=Trimin1|351097|estExt_Genemark1.C_Ctg_800051|Name=jgi.p|Trimin1|351097|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=530bp
MHLPSKGVVCCTLGLVAAVDAFTPIPPSRTHRYSLTDVPTLDINVMDPYT
GASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTS
EWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQ
LGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVL
NHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKL
RWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYT
NFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLLPRDRVVLRMRYGLD
NGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAH
VASGGGASSGGGSAASAAAAARRRQQRRRLGGVSSGGGGGGGACAHGSSV
AATTAPYVMAVCAAVSSGGGGDSGIAFRATCCAASCISGGSAPAGCSAVA
DEHCGKLRRWQHIRSSLRGSSCGSGSAVA*
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mRNA from alignment at Contig_80:516741..524238+

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11762 ID=mRNA_11762|Name=jgi.p|Trimin1|351097|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=7498bp|location=Sequence derived from alignment at Contig_80:516741..524238+ (Tribonema minus UTEX_B_3156 )
ATGCACCTGCCTTCGAAGGGGGTCGTGTGCTGCACACTGGGGCTGGTGGC
GGCAGTCGACGCCTTTACGCCAATACCGCCATCCAGAACACACCGCTACA
GGTGCGCCGCCTAAGCAGCTTCACCATGTCACCCCATCTCGCCTGTGCAA
TATTCAGTGATACACCGAATTGAATCGCGACGCGTGCTCTGTGTTGTGCA
GGCCTCTGGTTCGCCCACTGCCAGCCTGGGCACCTTTGGAAGGCGGCTCA
GGCACCCAGATCACCATCAGGGCGCTGAGTCCCCCCCGCCGCAAGCGCAG
CTTGACCGATGTACCGACTTTGGACATCAATGTCATGGATCCGTACACCG
GCGCCAGCGGCGTGCACTTCCAGGAGGTGTCAGATCTGCTTAGCAAAGAG
GATGAGGTGGCGCTGGCGCGGCTAATTCAGCAGCGGACGCTGTGGGATAC
CGTGCGGTGCAGCCTGGTAAGCTTGCGTGTGTGTCAAATGCTGGCGTCAC
TGCCGAGAGTCGTGTCCCGATGACACGCACACCACATGCAAGGCCAAGTA
GCATGCATCTCAGCAATCATCATCAATTCTTCGCTGGCGTCAACATCTGC
TGCGCGGGCAGTGTTGGAGCCGGCTTCAGCACCACTCAGCCCTGACGGTT
TCAAATTTTGCATGACAAAGTTGCCACCTCACACGGCCACACCAATTCCC
AGGTGCCTACGTACCTATTACTGTACCACAACACATGACAAGTTGCTTCT
GCAGCGCTGAATGGGCCCTTATGTGGTGGTGTGCCCTCGCCACCTCAGCT
AATCCTTGCCTGGATCTTTTGGCGCGTACCTCAGTTGATGCACCCTACGT
CACGCACCCATCACGGCATTGACAGGATCATACAAGAGTTTAAAGCGCTC
AATCAATCCGCCACACATTTTCCCCGACCTTTGCTACGATCTGCAAATCT
GTGGGGCTTTGCGTAGCTTTCAAGTGCATTTGCAGCTGCGGCGTGTACGT
TTGCTTTAGACACAACTTCCCCAGAGTTCACAACCGATTGCTCTTGTGCT
TGTTCGGTTTGATTACTGCCTTGCCTTCAGACATGCAAAGCGCTCGGTTC
TCTAACCTAGCATGCCAGCAGTCCCAAGGCATGACGTTTATTGATAAAAG
TACATGTATGTCAACAGTCCTTCTTATAAACAAATGCTTCAACTTATACC
TGGTACTAATGTACATCAACGCCGTATGTGTTGCCTACCTGCGCATACTC
CTGTTGTTGCTATCACATATGGCTGTCCCCCAAGTCGACCATCACCACCG
CTTAGCCCCCCCCCCCAGCACAGTTGCCACATATACTGCAAAACTCGTAC
TACTTGAAGTAGTTGTGCACTCACACACCCGCACCCCCCCCACGCGCGCA
GGCATCGGAGCTGCAGCGCGAGCCCACAACCTCAGAGTGGGCAGCCAGTT
GCGGCCGCGGCGGCAGCTGGCTTGATGAGGAGGAATTTTCTCGCGCCGTG
CGCGACGGCGATGCGGCGAAGGCAGCGCTCATCAGCGCAAACCTGAGGCT
GGTGATCTACGTGGCGCGGCGGCACAAGGCGCAGCTGGGGTCGCGCCTGC
CGCTGTCGGACCTCGTGCAGGAGGGAACGCTGGGGCTGGTGAGTCCGCGC
TCTAGCGGGGTTAGGGTTTGACGGCACAAGCGTCGCGGTCTTCTAAGGGT
ATCATGGGGATTAGAGTTTGTGTTCTGGTGAATGTGCCCGCTTAAGCGGG
GTTAAGGTCTGACGGCACGCCAGTTGTGGGCTTCCTTGGTAGGTTTCAGC
AGGTCAACATGGGGGTTAAGTTCAAGGGTACCATGGGGTTATGCTTTTTG
TGTGCAAGTAGGTGTGGTATTTATGAAACGCTGCGGCTGGTGAGTGTGTG
CTAAAGCATGCTTTAAAAGCATTAGGGTTGGACTGCACGACCATCGCGCG
GTCTTTGTTGGTAGGTTCCTAGGAGGTTACCAGGCAGCCATTGCCCTGCC
GGGACTCAACATGAGAGCAGTTACATGACATGCAGACACTCAAGCAGTTA
CGCAACGCTAGGTGATTCATATATTAGATAGTGGATGCTTGTTGACAATG
TTGGAGAAGCGTGTGGTCTCTTGCGTCCCGCGTCACAGGAGCTTTCGCTG
ATACTGGTCCAGTCAGGCAAAACTTGTCTGCGCTTGGTGCAGTCGGCGGT
TTCATGAGGAAATGCTCAGAGGTTAGCCAGTCATTGCTGACCGGTGTCAT
GGACAGCTAGTGCATGTACTTGAAGTGCGCCCCGAGACACCGTTGTCATC
AACCTCAACTGTCAGTGCACAGTGGGCCACTGCAATCCGGGTAAACTGAA
GTGCATCACCAGCTTCAACATGCTCACGTAGATCACCACACTGCGCGGCT
TTGCCTTTATTCTGCAGGTCAAGGCGGTTGAGAAGTTTGACCCGGAGCGG
GGGTTTCGCTTCTCCACGTACTCGGTGTTCTGGATCCGTCAGAACATTAC
ACGCGCAGTGCTCAACCACGGCAGGACTATCCGGCTGCCAGTGCACGTCC
AGGTAAGTTTGACATGCAAGTTGAAGTTGATGTTCGCAGCGTCAGGCAAT
CTCACTGAGTAAGTCCATGTGTTTGTGGAGGCGTTAATGATATGATATGC
AGTGTGTGCATCCTGATGCGTTGGACGATGCAATAGGGTGTGCCGTGTGT
GTGCATCGCAATGTGCTTGCCCGTGTGCGTCGGCGTTTGCGGATACAATG
TGCATCTGGCTGTTCACGTCGTGTGTGTAGGCCTTTGCGATTTGCTGCGC
AGTGGTTTTGTGTGCGCAGAATGCGCTTGTGAGTGCTCATGCGCCTGTTA
CGTCTGTTACGTACTCTCCTTCATGTATACGAATACTGACCAGCGTCCAC
GAGTTGCTGCGAGGCAAGCAACGATGCTGCTTGATACCTGTTGCACCAGT
TTGAGTGGTCATCGTAAGTGGATGCTCTTGGGACAATTTCATCGAATTCC
GTTTCGCCAGCCGCCATCGCAACACCACAGCACAGATTACAGCAACAATT
CCATCACATTCTTGTTCACTGAACTATGTCTCGTGACTTGGCTACTACAG
GACTTGCTGACCAAGACACGGCGCACTGCGTATGAGCTGGCGGCAGAGCT
GGGGAGGGCTGCGAGCAAAAAGGAGGTGGCGGACAGGCTTGGCGTTACGG
TGAGTTCAACTGGAAGTTTATAATGACGCCGAGTTCAACTTGAGTCTACA
AGTTGAACTCTGTCCCAACAGTGTGTGATTCGGCCTGCAATCAGTGTTCC
AAATCGTCTTGTGAGCACTGCTGCTTTGTGCAATGACACGCGCAGCAGTG
GTTGCCTGCCTGCAATATACACACCTAGAGGCACGTTTACAAGCGGAAAG
TAACATCTATCATGTATTTGTTCCCATCTGCGTCAGCGCATTTGCTGTAC
ACCTTGTATCACTACACAAAAGCGGTCCACACTTCCTGCTTCGTCGCAGT
GGCTGCCTCTTGTGTTCTGGGGCCCTGCAGCCTCTAGGCACTGCCTCAAC
TCATGGTATACATGCCTACCCCCCTGTGCTGTGCAGGTGGACCAGCTGCA
GTGGGCTGCACACCTGCGAGCAAGTTTAAGCACTGTATCAAACCTTGGTA
CACATGTACCCCCCTGTGCCGTGCGATCAAATCTGCGCACTGTCTCAAAC
CATTGTATACATGCCTACCCCTCTGACAGCGCATAGCGCCACCGGTGGAC
AGCCAAGCAGACACAACTCACGAGGGCATGTGTTGCTACACAACAAAATG
AATTAGGAACACGATGCGAACCCTGTCTGAAATGGCACGTCAGTGCTTAT
CAAGGACCAACCTCAACATGTGCTGAGTTCTGCTCCATCACCCTCTAAAA
CCACGGTATACATGCCTACCCCCCTGTCTGTGCGTGCAGGTGGACAAGCT
GCAGTGGCTGTCCGCCTGCCTGTCAGCAAAGCTGAGCACTGTCTCAAACC
ATACCATACATGCCTACCCGTCTCACACCATGGTATACATGCCTACCCCT
TGTGTGCAGGTGGACAAGCTGCGGTGGCTGTACGCCTGTCAGCAAAACGA
GCCCATCAGCCTCAGCGTGCAGCACCACACTGCCGCAATACGACCAGACA
ACAAGAACGAAAAGGTGAGACCTTGAAGTTGAAGTTGTACTTTTTATTAA
TTCTCGCTCAGGGCGCGAAAAAGCCCAGATGATTGGCATCTAGCTGTAAG
GAATCTACATGTCGTATGACAGTCTGAAAGTGTCGTATGACAGTCTGGAA
GTTGTACATCTTCAATCTTATCCGCACTCCTGCCGATCACGTGTATCCGT
CCCGGGGACACTTGGAATTGGAAGTTGATTTGATGATTTCTCATCAGTTT
TTTTCTGCACAGTAGAGTGGCTGCTGTTGCGCTATATATGCTCATTGGAC
GTACGTACATAACCTGCCCTTCTCATATGGCCAACGCACACGCACCTGCT
GTTGTTTGCGCGCAGCAATGCGCCCTCTGCTATCTAGCACATCTACTGCG
GCAATGCATTTTTGAAATATTGAAGTAGTGCTAACCTAGTTGAGCAAAGT
TGAAGTTCAATGAAATGTGCATGGTGGGGACCGCTGTTGAGTCATGTATG
CGCATTGGGCATGCATGCATGCACCTGTGCTGCCGTTTGCACGCAGCAAC
AGGCCATCTGACATTGAGCACACAACCGTAGTTTACTGTGGCGACGCACT
CAAATTTGAAGTTTTGATCTTCGAGAGGCTTTGTTTCGCCTGCTGGACCC
GCATGGCTCGCAGCACATTGCAGTATGAATGCATCGATGAACTAGACCCA
TGACCAACGCCCGGTGGTGTGAATGGGATGCCTGTAATTATCACGGCTAA
ACACAATCAAAAACACAATGGCAAAACCTTTGTCTGCCTCTTCAGAGAGC
ACTGCAATCGACACTGACACTCTTGCACTTTCCCCCTGCTGGTACGCAGA
GGAACATTGGAGACACGGTGCACTGTGACGTCATTGTAACTCCCGAGGAC
TACACCAACTTTAGGGCCATGCAGGAGGACGTCGACAACTTCCTGCGCAG
GTACGTTCTTCAAGTCAATGTTGAAGTACACGCTGTGTAGGATTTAATCA
ACTTCCTGAGCAGCTATGTTCTCCCACATTAGGACCTTGAAGTACACCCT
AAGTAGGGGTTTGGTTGTGGGGTGGGGTTTGAAGACCTTGAAGTACACCC
TAACTGCCATTTGAAGTACGCCCTCAGCAGGACACCAAGTCCAGGGCAGC
TTCCTGCGCAGGTACGCCTGGTGATGTCGTTTGGAAGTGATCATTGATGC
GCATTGAGACACTTGCAAGTGTTCGCAGGGCACATGTACATTCTGGTAGC
AAGCTGCAAATCTACCATTTGCGCTTTTTTGGGCCCCAAGCAAGAATCAA
CTTCAAGTACGTTATTCCTCCAGATTACCTTTTTGAAAGTATACTCTAAG
AAGGTGTGGTTGTGGGGCGTTGGTGGTAGTGCAAAGCGGGGGAAGTATGT
GTGCGATTGAGTCTCGCTTTGGTCAAAAAGTGCCGCATTGAGTGCACGTT
CAGTTCAATCCATGAAGAGAGTTCAGTTCAATCCATGAAGAGAGGGCTTT
CCGCGCCCCAAGCGCAAGTGTTCAACTTACACGATCTGACGTGCTCTTTT
TGCTGAGACGCTCGGAGCCTCGGAGTTGTGGTTAGAGGGCACATGCTTGG
CTGCGACTCTACTTGACTACAAGCGCTTGCCAGCCCGCCAGAACACCCCC
CCCGCCCCCCCCCCCCATTCCCACTGACTAAGCAGCAATCCACCAACTAA
GCACTTGTGCACTATGTAGTCTACCCCCCCCCCCCCCCACACACACACAC
ACACACACTGACTGAGCAGTTGTGCGCTTCTCTAAACCCTCCCCACCCCC
CTTTGCTTGCAGCCTGATGCCGCGCGACAGCGTCGTCTTGCGCATGCGCT
ACGGCAGCTGTGCACTAGTGTAAGCCCCTCCCCCCTCCTCCAACACACAC
ACTGACCAAGCAGTTGTGCACTAGTCTAACCCCTCTCCCCCCCCCCTCCA
CCCCCTGCTCCCCCCCCCCCCCCTTCAGCCTGCTGCCGCGCGACCGCGTC
GTCCTGCGCATGCGCTACGGCCTCGACAACGGCGGGCGCGGCGAGTCCGT
GGAGAGCGTGGCCACTCACCTGGGCATCTGCAAGCAGCGCGTGCGCCAGA
TTGAGAGTCGCGCGCTCAAGCGCTTGCGACTCCTCAGCGCGCGCGGCGAC
GCCATCGCGGAGGCAGCGCGCGCGCACGTCGCGTGAGACAGGGGCTCCAT
GCGCCGCCAGCAGCAGCGGCGGCGGCGCCAGCAGCGGCGGCGGCTCGGCG
GCGTCAGCAGCGGCGGCGGCTCGGCGGCGTCAGCAGCGGCGGCGGCTCGG
CGGCGTCAGCAGCGGCGGCGGCGGCGGCGGCGGCGCCTGTGCTCATGGCA
GCAGCGTTGCGGCGACAACAGCACCATATGTGATGGCTGTTTGCGCTGCC
GTCAGCAGCGGCGGCGGCGGCGACAGCGGCATCGCGTTTCGTGCGACATG
TTGCGCTGCCAGCTGCATCAGCGGCGGCAGCGCACCAGCTGGTTGCAGCG
CTGTTGCGGATGAGCATTGCGGCAAGCTGCGGCGGTGGCAGCACATCCGC
AGCTCATTGCGTGGCAGCAGTTGCGGCAGCGGCAGCGCGGTGGCGTAAGC
AGAGGTAGCAGCAATTTGGGTAGAGGCAGGCGTAGCAGCAGAAGAGCGGG
GGGCGGCAGCAGCGGCATTTGCGGCTGCGCAGCGCCGGCGCCAGCAGCAA
CACAAGCGGAAGCAGCAGCAGCAGCAGACGCAGCGGCGGCGCTGGCAGCG
GTGGTAACATGGTCGGCAGCGGCGCTCTTGCGGCTGCTAGTACAACCGGC
GGAAAACAATCACAAGCAGGAGTTCAAGTTCAGCACTTGAAGTGCCACCT
GGCAGCCCTGCGCGGGTGCGCCATTGTGCCACCTTAGTTATGGTGCTAGG
CTTCGATGCACAGCACCCTGTGCACAGGCCAGAGTTCGGCAGGGGGGTTC
ACTCAACCTAAGGAGTCTTCAAGCGGCAGCGGCTGTTGCCACTTGCACAC
ACTGTTGGGCCGTTTCTGCGGACGGTTCTCCCGTTCTGATCAGAACCTGG
TCTTTGATCCGCAGAAGCATTCGTACCCTGTTGCCCCTTTGTCCAATGTT
TCCGGAAGCACCACTCCAGCTGCAGCAGGGTATTTTCGTACGCAGCAAGT
AGCATTGGTTGACAGTCCAGGGGCGCGGCCGTTGCGATCCACATGGACCA
GCATCGCGGTATGTTTTGACGTTGCGTAACGGTGGCAAGCCACCGTCAAG
GGCTGTCATGATACCTATACCTACAGTACGCCGTATGGCGCATCGCGTGC
AGCCATGCGCACATCCAAGTTCATGAACAACGCGCAACGTTCACCTCC
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Coding sequence (CDS) from alignment at Contig_80:516741..524238+

>mRNA_11762 ID=mRNA_11762|Name=jgi.p|Trimin1|351097|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1590bp|location=Sequence derived from alignment at Contig_80:516741..524238+ (Tribonema minus UTEX_B_3156 )
ATGCACCTGCCTTCGAAGGGGGTCGTGTGCTGCACACTGGGGCTGGTGGC
GGCAGTCGACGCCTTTACGCCAATACCGCCATCCAGAACACACCGCTACA
GCTTGACCGATGTACCGACTTTGGACATCAATGTCATGGATCCGTACACC
GGCGCCAGCGGCGTGCACTTCCAGGAGGTGTCAGATCTGCTTAGCAAAGA
GGATGAGGTGGCGCTGGCGCGGCTAATTCAGCAGCGGACGCTGTGGGATA
CCGTGCGGTGCAGCCTGGCATCGGAGCTGCAGCGCGAGCCCACAACCTCA
GAGTGGGCAGCCAGTTGCGGCCGCGGCGGCAGCTGGCTTGATGAGGAGGA
ATTTTCTCGCGCCGTGCGCGACGGCGATGCGGCGAAGGCAGCGCTCATCA
GCGCAAACCTGAGGCTGGTGATCTACGTGGCGCGGCGGCACAAGGCGCAG
CTGGGGTCGCGCCTGCCGCTGTCGGACCTCGTGCAGGAGGGAACGCTGGG
GCTGGTCAAGGCGGTTGAGAAGTTTGACCCGGAGCGGGGGTTTCGCTTCT
CCACGTACTCGGTGTTCTGGATCCGTCAGAACATTACACGCGCAGTGCTC
AACCACGGCAGGACTATCCGGCTGCCAGTGCACGTCCAGGACTTGCTGAC
CAAGACACGGCGCACTGCGTATGAGCTGGCGGCAGAGCTGGGGAGGGCTG
CGAGCAAAAAGGAGGTGGCGGACAGGCTTGGCGTTACGGTGGACAAGCTG
CGGTGGCTGTACGCCTGTCAGCAAAACGAGCCCATCAGCCTCAGCGTGCA
GCACCACACTGCCGCAATACGACCAGACAACAAGAACGAAAAGAGGAACA
TTGGAGACACGGTGCACTGTGACGTCATTGTAACTCCCGAGGACTACACC
AACTTTAGGGCCATGCAGGAGGACGTCGACAACTTCCTGCGCAGCCTGAT
GCCGCGCGACAGCGTCGTCTTGCGCATGCGCTACGGCAGCTGTGCACTAG
TCCTGCTGCCGCGCGACCGCGTCGTCCTGCGCATGCGCTACGGCCTCGAC
AACGGCGGGCGCGGCGAGTCCGTGGAGAGCGTGGCCACTCACCTGGGCAT
CTGCAAGCAGCGCGTGCGCCAGATTGAGAGTCGCGCGCTCAAGCGCTTGC
GACTCCTCAGCGCGCGCGGCGACGCCATCGCGGAGGCAGCGCGCGCGCAC
GTCGCCAGCGGCGGCGGCGCCAGCAGCGGCGGCGGCTCGGCGGCGTCAGC
AGCGGCGGCGGCTCGGCGGCGTCAGCAGCGGCGGCGGCTCGGCGGCGTCA
GCAGCGGCGGCGGCGGCGGCGGCGGCGCCTGTGCTCATGGCAGCAGCGTT
GCGGCGACAACAGCACCATATGTGATGGCTGTTTGCGCTGCCGTCAGCAG
CGGCGGCGGCGGCGACAGCGGCATCGCGTTTCGTGCGACATGTTGCGCTG
CCAGCTGCATCAGCGGCGGCAGCGCACCAGCTGGTTGCAGCGCTGTTGCG
GATGAGCATTGCGGCAAGCTGCGGCGGTGGCAGCACATCCGCAGCTCATT
GCGTGGCAGCAGTTGCGGCAGCGGCAGCGCGGTGGCGTAA
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