Trimin1|351097|estExt_Genemark1.C_Ctg_800051 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|351097
Unique NameTrimin1|351097|estExt_Genemark1.C_Ctg_800051
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length530
Homology
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A836C936_9STRA (RNA_pol_sigma70 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C936_9STRA)

HSP 1 Score: 848 bits (2191), Expect = 2.800e-307
Identity = 529/529 (100.00%), Postives = 529/529 (100.00%), Query Frame = 0
Query:    1 MHLPSKGVVCCTLGLVAAVDAFTPIPPSRTHRYSLTDVPTLDINVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAHVASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGIAFRATCCAASCISGGSAPAGCSAVADEHCGKLRRWQHIRSSLRGSSCGSGSAVA 529
            MHLPSKGVVCCTLGLVAAVDAFTPIPPSRTHRYSLTDVPTLDINVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAHVASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGIAFRATCCAASCISGGSAPAGCSAVADEHCGKLRRWQHIRSSLRGSSCGSGSAVA
Sbjct:    1 MHLPSKGVVCCTLGLVAAVDAFTPIPPSRTHRYSLTDVPTLDINVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAHVASGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDSGIAFRATCCAASCISGGSAPAGCSAVADEHCGKLRRWQHIRSSLRGSSCGSGSAVA 529          
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A836CM85_9STRA (RNA polymerase sigma-70 factor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CM85_9STRA)

HSP 1 Score: 383 bits (983), Expect = 1.010e-125
Identity = 210/382 (54.97%), Postives = 271/382 (70.94%), Query Frame = 0
Query:   22 FTPIPPSRTHRYSLTDVPTLDINVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSR-LPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQH-HTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAHV 401
            FT    +   R      PTLD+ V+DPYTGAS VHF++  +LL+KE+EV+LARL+Q+R  W+ VR  LASE  +EPT SEWA + G  G +  +EEFS+ V +GD+AKAA+ISANLRLV+ +AR+HKA  GSR LPLSDLVQEG LGLVKAVEK+DPERGFRFSTY+ +WIRQ I RAV + GRTIRLP H+ D L   +R    L+ ELGR AS++E+A RLG+TV+KLRWL++C+ +EPISLS+Q  + + +RPD ++    +GD+VH D   TPE+Y N  A++EDVDN L  L PR+  VLRMRYG                   LD+GG  E++E++   +G+ ++RVRQIE RAL RLR+L A GDA AEAAR HV
Sbjct:   54 FTASRSATRQRRGSDSPPTLDLTVVDPYTGASYVHFRQAPELLTKEEEVSLARLVQRRIQWEAVRNRLASEFGKEPTLSEWAVAVGFRGGYPLDEEFSQQVAEGDSAKAAMISANLRLVLSLARKHKASQGSRCLPLSDLVQEGILGLVKAVEKYDPERGFRFSTYATWWIRQTIARAVCDIGRTIRLPAHIHDSLRSVQRVGRSLSEELGRTASEEELAQRLGLTVEKLRWLHSCKYSEPISLSLQPGNGSGLRPDKQSLTSTVGDSVH-DTNPTPEEYHNTMAIREDVDNLLSILTPREQTVLRMRYG-------------------LDSGGISETLEAIGVSIGVTRERVRQIERRALDRLRMLGACGDATAEAAREHV 415          
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A7S1B782_9STRA (Hypothetical protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B782_9STRA)

HSP 1 Score: 211 bits (538), Expect = 1.460e-58
Identity = 130/346 (37.57%), Postives = 197/346 (56.94%), Query Frame = 0
Query:   43 INVMDPYTGASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVT----PEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 384
            ++ M  Y  + G H     DLL+ ++EV LAR +Q    W+ VR  L  EL R PT +EWAA+ G     +D ++  R +R    AKAA+I +NLRLVI +A+R+ ++  + L + DL QEG+LGLVKAVEKFDPERGFRFSTY+ +WI+Q++ RA+ +  RTIRLPVH+ D L   R+   EL  +LGR  + +E+A+  G+TVDKL++L+   +    ++S +                    +  D I      PE+      M++D+D  L +L  R+  V+RMR+G                   LD+G + +++E +     + ++R+RQIE+RAL +LR
Sbjct:  171 VDTMKDYLKSMGNH-----DLLTAQEEVLLARHVQLLLKWEEVRERLEIELARPPTYAEWAAAVG-----VDTKKLKRQIRRSQRAKAAMIESNLRLVISIAKRYTSRTNT-LSVQDLCQEGSLGLVKAVEKFDPERGFRFSTYATWWIKQSVMRAIADQSRTIRLPVHIHDQLNTVRKHKRELTGKLGRQPTTEEIAEAAGITVDKLQFLWKSSRE---TMSFEQEIRVGGAGXXXXXXXXXTVILSDSITDKEHMPEEKAALSLMKDDIDRLLGTLSVREQDVIRMRFG-------------------LDDG-KAKTLEEIGKRFRVTRERIRQIEARALHKLR 482          
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A7S2WX55_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WX55_9STRA)

HSP 1 Score: 211 bits (536), Expect = 2.540e-58
Identity = 125/324 (38.58%), Postives = 191/324 (58.95%), Query Frame = 0
Query:   63 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDN--KNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 384
            LL  E+EV LAR +Q    W+ VR  L  +L R PT  EWA+S G     +  +E  R +  G +AK A+IS+NLRLVI +A+R++ +    L L+DL+QEG+LGLV+AVEKFDPE+GF+FSTYS +WI+Q I RA+ +  RTIRLPVH+ DLL   ++   EL   LGR  + +E+A+R+ + ++KLR+L  C +   +S+  Q      +  +  K  +  +GD++  D    P   T    ++ED++  + +L PR+  V+RMR+G  A                     + +++E +     + ++RVRQIE+RAL +LR
Sbjct:  172 LLRAEEEVLLARKVQAMIGWEDVRDGLKDQLGRPPTLEEWASSVG-----MQPDELRRKLLRGQSAKKAMISSNLRLVISIAKRYQKR---GLALTDLIQEGSLGLVRAVEKFDPEKGFKFSTYSTWWIKQAILRAIADQSRTIRLPVHIHDLLNTMKKQTRELHVSLGRNPTNEELAERMNLPIEKLRFLQECSR-PAVSMDAQRRAMTKKSSSAGKGGEVQLGDSIKDDG-PCPTQVTEANMLKEDIEKLVCTLSPREQDVIRMRFGLDA--------------------DKPKTLEEIGNVFSVTRERVRQIEARALHKLR 465          
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: J7G2H9_9CRYP (RNA-polymerase sigma factor n=1 Tax=Chroomonas mesostigmatica CCMP1168 TaxID=1195612 RepID=J7G2H9_9CRYP)

HSP 1 Score: 209 bits (533), Expect = 5.630e-58
Identity = 120/323 (37.15%), Postives = 202/323 (62.54%), Query Frame = 0
Query:   63 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRP-DNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 384
            LL  E+E+ LAR I Q   W+ V+ SL  +LQREPT+SEW A+C       D ++F   + +   AK  +++ANLRLV+ +A+R+   +   + L DL+QEG+LGL++A EKFD E+GF+FSTY+ +W++Q +TRA+ +H RTIRLPVH+ D ++  R+T   L  E+GR+ +++E+A+++ ++V+KLR   +  Q+   +LS++      RP  N ++   + D +  D   +PE++     +++D++N + SL PR+  V+RMRYG                   LD+G R +++E +     + ++RVRQIE++A+++LR
Sbjct:  147 LLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAAC----KVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRY---VNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLR---SVLQSAQPTLSLE------RPLKNDDDASQLSDFIEADQ-ESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYG-------------------LDDG-RIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 432          
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A9BK56_HEMAN (RpoD n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A9BK56_HEMAN)

HSP 1 Score: 209 bits (533), Expect = 5.630e-58
Identity = 120/323 (37.15%), Postives = 202/323 (62.54%), Query Frame = 0
Query:   63 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRP-DNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 384
            LL  E+E+ LAR I Q   W+ V+ SL  +LQREPT+SEW A+C       D ++F   + +   AK  +++ANLRLV+ +A+R+   +   + L DL+QEG+LGL++A EKFD E+GF+FSTY+ +W++Q +TRA+ +H RTIRLPVH+ D ++  R+T   L  E+GR+ +++E+A+++ ++V+KLR   +  Q+   +LS++      RP  N ++   + D +  D   +PE++     +++D++N + SL PR+  V+RMRYG                   LD+G R +++E +     + ++RVRQIE++A+++LR
Sbjct:  144 LLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAAC----KVSDVKKFRAILHNARRAKERMVAANLRLVVSIAKRY---VNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLR---SVLQSAQPTLSLE------RPLKNDDDASQLSDFIEADQ-ESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYG-------------------LDDG-RIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 429          
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: Q8S9D0_GUITH (RNA polymerase sigma factor n=1 Tax=Guillardia theta TaxID=55529 RepID=Q8S9D0_GUITH)

HSP 1 Score: 209 bits (533), Expect = 6.300e-58
Identity = 120/323 (37.15%), Postives = 202/323 (62.54%), Query Frame = 0
Query:   63 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRP-DNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 384
            LL  E+E+ LAR I Q   W+ V+ SL  +LQREPT+SEW A+C       D ++F   + +   AK  +++ANLRLV+ +A+R+   +   + L DL+QEG+LGL++A EKFD E+GF+FSTY+ +W++Q +TRA+ +H RTIRLPVH+ D ++  R+T   L  E+GR+ +++E+A+++ ++V+KLR   +  Q+   +LS++      RP  N ++   + D +  D   +PE++     +++D++N + SL PR+  V+RMRYG                   LD+G R +++E +     + ++RVRQIE++A+++LR
Sbjct:  144 LLRPEEEIQLAREISQLLHWEHVKISLREKLQREPTSSEWTAAC----KVSDVKKFRSILHNARRAKERMVAANLRLVVSIAKRY---VNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRTLNIEIGRSPTEEEIAEKMDMSVEKLR---SVLQSAQPTLSLE------RPLKNDDDASQLSDFIEADQ-ESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYG-------------------LDDG-RIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 429          
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A2T2S314_9CYAN (RNA polymerase sigma factor SigA n=1 Tax=Cyanobacteria bacterium QS_8_64_29 TaxID=1919134 RepID=A0A2T2S314_9CYAN)

HSP 1 Score: 205 bits (521), Expect = 3.410e-57
Identity = 127/349 (36.39%), Postives = 200/349 (57.31%), Query Frame = 0
Query:   39 PTLDINVMDPYTGAS-GVHFQEVSD--LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 384
            P  D +   PYT  S  ++ QE+    LL  ++E+ LAR I +    +  R  LA  L+REPT  EWAA  G     +   EF R +     AK  ++ +NLRLV+ +A+++   +   L   DL+QEG+LGL++A EKFD E+G++FSTY+ +WIRQ ITRA+ +  RTIRLPVH+ + +++ ++T   L+ ELGR  S++E+A R+ +T++KLR++    Q  PISL          P  K E   +GD +  D   +PED  +   ++ED+++ L +L PR+  VLR+RYG                       GR +++E +     + ++R+RQIE++AL++LR
Sbjct:   71 PAEDRDETQPYTEDSIRLYLQEIGRVRLLRADEEIELARQIAELLELERSRDELADALEREPTQQEWAAEAG-----MPLAEFQRYLHTRRRAKEKMVQSNLRLVVSIAKKY---MNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKVLSQELGRKPSEEEIATRMEMTIEKLRFIAKSAQL-PISLET--------PIGKEEDSRLGDFIEADG-ESPEDEVSKNLLREDLEDVLETLSPRERDVLRLRYGM--------------------QDGRMKTLEEIGQFFNVTRERIRQIEAKALRKLR 381          
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: A0A7S3EI06_9RHOD (Hypothetical protein n=11 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S3EI06_9RHOD)

HSP 1 Score: 207 bits (526), Expect = 4.310e-57
Identity = 127/331 (38.37%), Postives = 195/331 (58.91%), Query Frame = 0
Query:   56 HFQEV--SDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 384
            + QE+  + LL  E E+ LAR IQ     +  R     ++ R PT +EWA  C      LD  +F + +  G  AK  ++SANLRLV+ +A+++   L   L   DL+QEG++GL+K  EKFD ++GF+FSTY+ +WIRQ+ITRA+ +  R IRLPVHV D +T  R+ +  L  ELGR  S+KE ADR+ + VDKLR++  C ++   +LS++  T    PD+K E   +   +  +   +PE+      ++ED+D+ L +L  R+  V+RMRYG                   LD+G + +++E + TH  + ++R+RQIES+ALK+LR
Sbjct:  162 YLQEIGKTKLLKAEMEIELARSIQMLLGLERTRSEFIEKVGRSPTDAEWAQECD-----LDYSQFKKNLYCGRLAKEKMVSANLRLVVSIAKKY---LNRGLSFQDLIQEGSIGLIKGTEKFDADKGFKFSTYATWWIRQSITRAIADFSRPIRLPVHVNDTITSVRKVSKALEVELGRPPSEKETADRMEIPVDKLRFVLRCARS---TLSLE--TPVGGPDDK-ESTTLASFIEWNG-ESPEEKAEKSLLREDLDSVLGTLNARERDVIRMRYG-------------------LDDG-KAKTLEEIGTHFAVTRERIRQIESKALKKLR 457          
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Match: Q98RZ3_GUITH (RNA-polymerase sigma factor n=2 Tax=Guillardia theta TaxID=55529 RepID=Q98RZ3_GUITH)

HSP 1 Score: 206 bits (524), Expect = 6.360e-57
Identity = 120/323 (37.15%), Postives = 199/323 (61.61%), Query Frame = 0
Query:   63 LLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTSEWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQLGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVLNHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKLRWLYACQQNEPISLSVQHHTAAIRP-DNKNEKRNIGDTVHCDVIVTPEDYTNFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLXXXXXXXXXXXXXLDNGGRGESVESVATHLGICKQRVRQIESRALKRLR 384
            LL  ++E+ LAR I Q   W+ V+ SL  +L+REPT SEW A+C       D  +F   + +   AK  +++ANLRLV+ +A+R+   +   + L DL+QEG+LGL++A EKFD E+GF+FSTY+ +W++Q +TRA+ +H RTIRLPVH+ D ++  R+T   L  E+GR+ +++E+A R+ ++V+KLR     Q  +P +LS++      RP  N ++   + D +  D   +PE++     +++D++N + SL PR+  V+RMRYG                   LD+G R +++E +     + ++RVRQIE++A+++LR
Sbjct:  127 LLRPDEEIQLAREISQLLHWEHVKISLRDKLRREPTNSEWTAAC----KVSDVRKFRSILHNARRAKERMVAANLRLVVSIAKRY---VNRGMSLQDLIQEGSLGLIRAAEKFDSEKGFKFSTYATWWVKQAVTRAIADHSRTIRLPVHLYDTISAIRKTTRNLNIEIGRSPTEEEIAKRMDMSVEKLR--NVLQSAQP-TLSLE------RPLKNDDDTSQLSDFIEADQ-ESPEEHVEKSMLRDDLENVINSLSPRERDVVRMRYG-------------------LDDG-RIKTLEEIGQIFSVTRERVRQIEAKAIRKLR 412          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351097 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C936_9STRA2.800e-307100.00RNA_pol_sigma70 domain-containing protein n=1 Tax=... [more]
A0A836CM85_9STRA1.010e-12554.97RNA polymerase sigma-70 factor n=1 Tax=Tribonema m... [more]
A0A7S1B782_9STRA1.460e-5837.57Hypothetical protein n=2 Tax=Corethron hystrix Tax... [more]
A0A7S2WX55_9STRA2.540e-5838.58Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
J7G2H9_9CRYP5.630e-5837.15RNA-polymerase sigma factor n=1 Tax=Chroomonas mes... [more]
A9BK56_HEMAN5.630e-5837.15RpoD n=1 Tax=Hemiselmis andersenii TaxID=464988 Re... [more]
Q8S9D0_GUITH6.300e-5837.15RNA polymerase sigma factor n=1 Tax=Guillardia the... [more]
A0A2T2S314_9CYAN3.410e-5736.39RNA polymerase sigma factor SigA n=1 Tax=Cyanobact... [more]
A0A7S3EI06_9RHOD4.310e-5738.37Hypothetical protein n=11 Tax=Rhodosorus marinus T... [more]
Q98RZ3_GUITH6.360e-5737.15RNA-polymerase sigma factor n=2 Tax=Guillardia the... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000943RNA polymerase sigma-70PRINTSPR00046SIGMA70FCTcoord: 335..347
score: 43.33
coord: 183..191
score: 62.72
coord: 159..172
score: 64.42
coord: 357..372
score: 22.26
coord: 372..383
score: 56.77
IPR000943RNA polymerase sigma-70PROSITEPS00715SIGMA70_1coord: 159..172
IPR007630RNA polymerase sigma-70 region 4PFAMPF04545Sigma70_r4coord: 335..384
e-value: 2.8E-11
score: 42.7
IPR007624RNA polymerase sigma-70 region 3PFAMPF04539Sigma70_r3coord: 216..298
e-value: 8.8E-9
score: 35.3
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 206..256
e-value: 4.5E-11
score: 44.7
IPR036388Winged helix-like DNA-binding domain superfamilyGENE3D1.10.10.10coord: 332..392
e-value: 1.2E-13
score: 52.4
IPR007627RNA polymerase sigma-70 region 2PFAMPF04542Sigma70_r2coord: 132..204
e-value: 1.1E-17
score: 63.6
NoneNo IPR availableGENE3D1.10.601.10RNA Polymerase Primary Sigma Factorcoord: 110..205
e-value: 2.4E-35
score: 124.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 414..433
NoneNo IPR availablePANTHERPTHR30603:SF45RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTICcoord: 335..385
coord: 61..329
NoneNo IPR availablePANTHERPTHR30603RNA POLYMERASE SIGMA FACTOR RPOcoord: 335..385
coord: 61..329
NoneNo IPR availableCDDcd06171Sigma70_r4coord: 331..384
e-value: 1.0627E-6
score: 43.6322
IPR014284RNA polymerase sigma-70 like domainTIGRFAMTIGR02937TIGR02937coord: 128..384
e-value: 1.2E-26
score: 91.3
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 335..388
IPR013324RNA polymerase sigma factor, region 3/4-likeSUPERFAMILY88659Sigma3 and sigma4 domains of RNA polymerase sigma factorscoord: 203..255
IPR013325RNA polymerase sigma factor, region 2SUPERFAMILY88946Sigma2 domain of RNA polymerase sigma factorscoord: 61..205

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_80contigContig_80:516741..523488 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351097mRNA_11762Tribonema minus UTEX_B_3156 mRNAContig_80 516741..524238 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|351097|estExt_Genemark1.C_Ctg_800051 ID=Trimin1|351097|estExt_Genemark1.C_Ctg_800051|Name=jgi.p|Trimin1|351097|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=530bp
MHLPSKGVVCCTLGLVAAVDAFTPIPPSRTHRYSLTDVPTLDINVMDPYT
GASGVHFQEVSDLLSKEDEVALARLIQQRTLWDTVRCSLASELQREPTTS
EWAASCGRGGSWLDEEEFSRAVRDGDAAKAALISANLRLVIYVARRHKAQ
LGSRLPLSDLVQEGTLGLVKAVEKFDPERGFRFSTYSVFWIRQNITRAVL
NHGRTIRLPVHVQDLLTKTRRTAYELAAELGRAASKKEVADRLGVTVDKL
RWLYACQQNEPISLSVQHHTAAIRPDNKNEKRNIGDTVHCDVIVTPEDYT
NFRAMQEDVDNFLRSLMPRDSVVLRMRYGSCALVLLPRDRVVLRMRYGLD
NGGRGESVESVATHLGICKQRVRQIESRALKRLRLLSARGDAIAEAARAH
VASGGGASSGGGSAASAAAAARRRQQRRRLGGVSSGGGGGGGACAHGSSV
AATTAPYVMAVCAAVSSGGGGDSGIAFRATCCAASCISGGSAPAGCSAVA
DEHCGKLRRWQHIRSSLRGSSCGSGSAVA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR000943RNA_pol_sigma70
IPR007630RNA_pol_sigma70_r4
IPR007624RNA_pol_sigma70_r3
IPR036388WH-like_DNA-bd_sf
IPR007627RNA_pol_sigma70_r2
IPR014284RNA_pol_sigma-70_dom
IPR013324RNA_pol_sigma_r3/r4-like
IPR013325RNA_pol_sigma_r2