mRNA_11231 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|351062 vs. uniprot
Match: A0A835YU92_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YU92_9STRA) HSP 1 Score: 409 bits (1052), Expect = 6.890e-143 Identity = 235/235 (100.00%), Postives = 235/235 (100.00%), Query Frame = 3 Query: 123 MADAGLMAEAVVGLVAEGRFAFEESSLGGGGGGTGVNDSSKTQFPLFPESLITLELESLYFAIDSDCDEQPMLMLPPRIEHLRITSEDANRDYVTFDGSLGPLPPSLRTLFVDHYEAAELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGNLQRLTLAGPIPGGSLRLAIGPLPTTLTHFTCWLWGHKNEEGSSSDAQLPPLPQGLQELRVNGV 827 MADAGLMAEAVVGLVAEGRFAFEESSLGGGGGGTGVNDSSKTQFPLFPESLITLELESLYFAIDSDCDEQPMLMLPPRIEHLRITSEDANRDYVTFDGSLGPLPPSLRTLFVDHYEAAELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGNLQRLTLAGPIPGGSLRLAIGPLPTTLTHFTCWLWGHKNEEGSSSDAQLPPLPQGLQELRVNGV Sbjct: 1 MADAGLMAEAVVGLVAEGRFAFEESSLGGGGGGTGVNDSSKTQFPLFPESLITLELESLYFAIDSDCDEQPMLMLPPRIEHLRITSEDANRDYVTFDGSLGPLPPSLRTLFVDHYEAAELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGNLQRLTLAGPIPGGSLRLAIGPLPTTLTHFTCWLWGHKNEEGSSSDAQLPPLPQGLQELRVNGV 235
BLAST of jgi.p|Trimin1|351062 vs. uniprot
Match: A0A835YJU1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJU1_9STRA) HSP 1 Score: 198 bits (504), Expect = 4.700e-54 Identity = 116/217 (53.46%), Postives = 132/217 (60.83%), Query Frame = 3 Query: 201 LGGGGGGTGVNDSSKTQFPLFPESLITLELESLYFAIDSDCDEQPMLMLPPRIEHLRITSEDANRDYVTFDGSLGPLPPSLRTLFVDHYEA-AELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGNLQRLTLAGPIPGGSLRLAIGPLPTTLTHFTCWLW-------GHKNEEGSSSDAQLPPLPQGLQELRVNGV 827 L GG G TG N QFP+ P+SLITLELESLY A D C + PML LPP I+HLRITSE A + F G+LGPLPPSLRTL DH E A LP ELR+W T QR+CDALA++ GNL+RLTL GP+ SLR AIGPLP TLTH+ CWL ++E G SSDAQLP LPQGLQEL V+GV Sbjct: 1184 LNGGRGDTGANGGRVNQFPVLPDSLITLELESLYSA-DHGC-QHPMLTLPPNIQHLRITSERACEPELAFSGNLGPLPPSLRTLVFDHPEGCAALPPLPLGLRELTLGEYEHKLPALLPPSLEALELRNWGTQQRLCDALASSCSGNLRRLTLIGPMADASLRSAIGPLPATLTHWVCWLVPADVEDEDEQDEGGYSSDAQLPVLPQGLQELCVDGV 1398
BLAST of jgi.p|Trimin1|351062 vs. uniprot
Match: A0A835YLE8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLE8_9STRA) HSP 1 Score: 173 bits (439), Expect = 1.330e-49 Identity = 123/215 (57.21%), Postives = 132/215 (61.40%), Query Frame = 3 Query: 210 GGGGTGVNDSSKTQFPLFPESLITLELESLYFAIDSDCDEQPMLMLPPRIEHLRITSEDANRDYVTFDGSLGPLPPSLRTLFVDHYEA-AELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGNLQRLTLAGPIPGGSLRLAIGPLPTTLTHFTCWLWGHKNEEGS--------SSDAQLPPLPQGLQELRVNGV 827 G GGT N QFP+ P+SLIT ELE LY A + PML LPP I+HLR+T E F G LGPLPPSLRTL DH E A LPXXXXXXX XXXXXXXXX W QRV DALATA GGNLQRL+L G PGGSLR AIGPLP TLTHFTCWL E+ SS+AQLP LPQG+QEL V GV Sbjct: 4 GRGGTDANGGRINQFPVLPDSLITPELECLYSADHGR--QHPMLTLPPNIQHLRVTCERVGEPEFAFSGPLGPLPPSLRTLVFDHPEGCAALPXXXXXXXELTLGEYEHALPAXXXXXXXXXXXXXWSEQQRVRDALATASGGNLQRLSLLGWSPGGSLRSAIGPLPATLTHFTCWLVPINVEDEEXXXXXDSYSSNAQLPVLPQGVQELCVKGV 216
BLAST of jgi.p|Trimin1|351062 vs. uniprot
Match: A0A835YLH6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLH6_9STRA) HSP 1 Score: 177 bits (449), Expect = 3.540e-47 Identity = 108/223 (48.43%), Postives = 129/223 (57.85%), Query Frame = 3 Query: 180 FAFEESSLGGGGGGTGVNDSSKTQFPLFPESLITLELESLYFAIDSDCDEQPMLMLPPRIEHLRITSEDANRDYVTFDGSLGPLPPSLRTLFVDHYEA-AELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGNLQRLTLAGPIPGGSLRLAIGPLPTTLTHFTCWLWGHKNEEGS------SSDAQLPPLPQGLQELRVNGV 827 ++ ESS GG G N QFP+FP+SLITLELESLY A D D + P+L LPP I+ + IT E +++ + F+G LGPLPPSLRTL ++H + A LP EL+ W Q +CDALAT GGN QRLTLAG G LR +IGPLP TLTHFTCWL G + SSDAQLPPLP GLQEL VNG+ Sbjct: 94 LSWRESS--GGRGSNEGNGGRVNQFPVFPDSLITLELESLYSA-DHDF-QHPVLTLPPNIQQVSITCERSDQPELAFNGPLGPLPPSLRTLVIEHPDGCAALPPLPLGLRELTLSEYEHKLQAPLPPSLEALELQGWGKQQSLCDALATFGGGNFQRLTLAGRSQRGGLRSSIGPLPATLTHFTCWLGGGEXXXXXXXXXXXSSDAQLPPLPLGLQELCVNGI 312
BLAST of jgi.p|Trimin1|351062 vs. uniprot
Match: A0A835Z8S2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8S2_9STRA) HSP 1 Score: 164 bits (414), Expect = 4.030e-44 Identity = 105/219 (47.95%), Postives = 119/219 (54.34%), Query Frame = 3 Query: 186 FEESSLGGGGGGTGVNDSSKTQFPLFPESLITLELESLYFAIDSDCDEQPMLMLPPRIEHLRITSEDANRDYVTFDGSLGPLPPSLRTLFVDHYEA-AELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGNLQRLTLAGPIPGGSLRLAIGPLPTTLTHFTCWL-WGHKNEE---GSSSDAQLPPLPQGLQELRVNGV 827 E L GGGGGTG N TQFP+ P+SLITLELESLY D + P+L LPP I+ LR+T E A+ + F G LG LPPSLRTL DH + A LP LR A +G NLQRL+L G PGGSL AIGPLP TLTHFTCWL G + +E G SS AQLP LPQGLQEL NG+ Sbjct: 203 LSERVLNGGGGGTGANGGRITQFPVLPDSLITLELESLYSG--GDGSQHPVLTLPPNIQRLRVTCEQASEPDLMFSGPLGLLPPSLRTLVFDHPDGCAALPPLPPG-------------------------LR------------ALTLGNNLQRLSLMGWSPGGSLHSAIGPLPATLTHFTCWLDRGQEEDEDGDGYSSHAQLPLLPQGLQELYANGI 382
BLAST of jgi.p|Trimin1|351062 vs. uniprot
Match: A0A835YJT8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJT8_9STRA) HSP 1 Score: 158 bits (400), Expect = 2.560e-41 Identity = 102/205 (49.76%), Postives = 117/205 (57.07%), Query Frame = 3 Query: 246 TQFPLFPESLITLELESLYFAIDSDCDEQPMLMLPPRIEHLRITSEDANRDYVTFDGSLGPLPPSLRTLFVDH-YEAAELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGNLQRLTLAGPIPGGSLRLAIGPLPTTLTHFTCWLWGHKNEEGSSS----------DAQLPPLPQGLQELRVNGV 827 TQF FP+SL+TLELE L A D E P+L LPP ++HLRIT E+ + + F G LGPLPPSLRTL +DH Y LP XXXXX ELRD QR+ +ALA+ LQRLTL GGSL AIGPLP LTHFTCWL G ++ +AQLPPLPQGLQELRVNGV Sbjct: 283 TQFSSFPDSLVTLELELLNSA--DDRLEHPLLTLPPNLQHLRITCEEESDTRIMFHGPLGPLPPSLRTLLIDHHYGCMALPPXXXXXREVTLGEYEHALPAPLPPCLEALELRDCRKRQRLREALASTDSSRLQRLTLVQKSAGGSLCSAIGPLPAALTHFTCWLNGSGDKXXXXXXXXXXXXXXRNAQLPPLPQGLQELRVNGV 485
BLAST of jgi.p|Trimin1|351062 vs. uniprot
Match: A0A835YJH5_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJH5_9STRA) HSP 1 Score: 154 bits (390), Expect = 1.870e-40 Identity = 92/174 (52.87%), Postives = 101/174 (58.05%), Query Frame = 3 Query: 333 PMLMLPPRIEHLRITSEDANRDYVTFDGSLGPLPPSLRTLFVDHYEAAELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGNLQRLTLAGPIPGGSLRLAIGPLPTTLTHFTCWLWGHKNEEGSS---------SDAQLPPLPQGLQELRVNGV 827 P+L LPP IEHLRIT E +Y FDGSLGPLP SLRT+ +DH EAA L ELRDW QR+ DALAT+ GG LQRLTL G P GSLR AIGPLP LTHFTCWL G ++ SDAQLP LPQGLQELR+NGV Sbjct: 251 PVLALPPHIEHLRITCEPDQEEY-GFDGSLGPLPLSLRTMVIDHPEAAVL--------------------QPLPPCLEALELRDWRKRQRLYDALATSGGGTLQRLTLTGRSPRGSLRSAIGPLPAALTHFTCWLEGGEDXXXXXXXXXXXXXXSDAQLPLLPQGLQELRINGV 403
BLAST of jgi.p|Trimin1|351062 vs. uniprot
Match: A0A835YK84_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK84_9STRA) HSP 1 Score: 102 bits (255), Expect = 1.980e-22 Identity = 94/152 (61.84%), Postives = 104/152 (68.42%), Query Frame = 3 Query: 204 GGGGGGTGVNDSSK-TQFPLFPESLITLELESLYFAIDSDCDEQPMLMLPPRIEHLRITSE-DANRDYVTFDGSLGPLPPSLRTLFVDHYEAAELPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELRDWCTPQRVCDALATAIGGN-LQRL 650 G GG T D+S QFP P+SL+TLELESL + P+L L PR+EHLR+ S+ D DY FDGSLG LPPSLRTL +DH EAA LP XXXXXXXXXXXXXXXXXXXXXXXX ELR W QR+ DALAT GGN LQ L Sbjct: 68 GSNGGDTSPADASHINQFPSLPDSLVTLELESLISTNRFAVLQHPVLTLTPRMEHLRVVSDTDGQPDY-EFDGSLGSLPPSLRTLLIDHPEAAALPLXXXXXXXXXXXXXXXXXXXXXXXXLEALELRSWRQRQRLWDALATCGGGNGLQEL 218 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351062 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_11231 ID=mRNA_11231|Name=jgi.p|Trimin1|351062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=830bp|location=Sequence derived from alignment at Contig_79:560571..562274- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GCGAAGAAAAGAAAGCAGGCCGAGGCCAGCAGAGCCGTGTTGACTGCCATback to top protein sequence of jgi.p|Trimin1|351062 >Trimin1|351062|estExt_Genemark1.C_Ctg_790071 ID=Trimin1|351062|estExt_Genemark1.C_Ctg_790071|Name=jgi.p|Trimin1|351062|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=236bp MADAGLMAEAVVGLVAEGRFAFEESSLGGGGGGTGVNDSSKTQFPLFPESback to top mRNA from alignment at Contig_79:560571..562274- Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_11231 ID=mRNA_11231|Name=jgi.p|Trimin1|351062|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1704bp|location=Sequence derived from alignment at Contig_79:560571..562274- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_79:560571..562274- >mRNA_11231 ID=mRNA_11231|Name=jgi.p|Trimin1|351062|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=708bp|location=Sequence derived from alignment at Contig_79:560571..562274- (Tribonema minus UTEX_B_3156 )back to top |