mRNA_12548 (mRNA) Tribonema minus UTEX_B_3156
|
Overview
Homology
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A835YJN1_9STRA (BZIP domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJN1_9STRA) HSP 1 Score: 720 bits (1859), Expect = 1.470e-257 Identity = 468/468 (100.00%), Postives = 468/468 (100.00%), Query Frame = 1
Query: 1 MSTASASSDGGGGQAAYVLRPLKKRPLSDNAPPGSSARSTASTCSYXXXXXXXGSGDDGNSTDDDARHQQHEQGACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAILQQRAASPSXXXXXXXXXXXXPLPPHTAEADSKPARMAPSPTPQQAYAGSRSPCRKQMAIARPASAASSGASPSAACLAPPLVPLAVLPVAPSAATKLPMVTAQAPAGAEYGSVPAHMYAHYPIYPPHAAAYVAAAGALLPGIYGXXXXXXXXXXALPAHVLQAHAFDMQGRYAAXXXXXXXXXXXXXXXXXXXXXXXXXHPYAAAYYQYHQ 1404
MSTASASSDGGGGQAAYVLRPLKKRPLSDNAPPGSSARSTASTCSYXXXXXXXGSGDDGNSTDDDARHQQHEQGACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAILQQRAASPSXXXXXXXXXXXXPLPPHTAEADSKPARMAPSPTPQQAYAGSRSPCRKQMAIARPASAASSGASPSAACLAPPLVPLAVLPVAPSAATKLPMVTAQAPAGAEYGSVPAHMYAHYPIYPPHAAAYVAAAGALLPGIYGXXXXXXXXXXALPAHVLQAHAFDMQGRYAAXXXXXXXXXXXXXXXXXXXXXXXXXHPYAAAYYQYHQ
Sbjct: 1 MSTASASSDGGGGQAAYVLRPLKKRPLSDNAPPGSSARSTASTCSYXXXXXXXGSGDDGNSTDDDARHQQHEQGACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAILQQRAASPSXXXXXXXXXXXXPLPPHTAEADSKPARMAPSPTPQQAYAGSRSPCRKQMAIARPASAASSGASPSAACLAPPLVPLAVLPVAPSAATKLPMVTAQAPAGAEYGSVPAHMYAHYPIYPPHAAAYVAAAGALLPGIYGXXXXXXXXXXALPAHVLQAHAFDMQGRYAAXXXXXXXXXXXXXXXXXXXXXXXXXHPYAAAYYQYHQ 468
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S2REX0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2REX0_9STRA) HSP 1 Score: 88.6 bits (218), Expect = 4.720e-15 Identity = 79/187 (42.25%), Postives = 107/187 (57.22%), Query Frame = 1
Query: 220 GACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCA---GTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAIL 771
G KR +LS +++L SRERNR+HA+KTRQRKK ++ LQAR +LK E L++ VDER TA +LL + E G + S S+ + +A A G D D+ D+ E + P + + TP ERE IRRERNR+HAKRTR RKKL ++ ER+I V E+ +LR L
Sbjct: 183 GDSKKRRRLSSEERLQRSRERNRMHAKKTRQRKKMQIEALQARIDELKTEFLGLRQIVDERYTAYILLVMSGAAENGSGASFLSSSAEGPSTLGSKFTSASLAQIIGRDPDAE-----DDKE---EAPQKRTRRRGKYTPAEREHIRRERNRMHAKRTRDRKKLFLEESERKIAVMEEENAKLRDFL 361
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S2RAP5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RAP5_9STRA) HSP 1 Score: 77.8 bits (190), Expect = 1.770e-11 Identity = 75/194 (38.66%), Postives = 101/194 (52.06%), Query Frame = 1
Query: 220 GACSKRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEG------TDG-------------ETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEK 744
G SKR KL+ + +L SRERNR+HA+KTRQRKK ++ LQ QLK E L +DER A LL + + EG TDG E G+S + + ++ AG G ++ + E+ L + D S+ TP+E EQIRRERNR+HAKRTR RKK +D++ I EK
Sbjct: 305 GDPSKRIKLTSEQRLERSRERNRIHARKTRQRKKQQMERLQDTVDQLKLENVALTRELDERIAAIKLLVMRSPDEGDDLLAITDGGYRDSEPSADSLSEGGSSTSKNDHTDTGSS--MAGDEGIQLNGMILGVAEMAEMDIDLEL-MKKDRSQCTPEELEQIRRERNRMHAKRTRVRKKAQLEDIQETIASLEK 495
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S4AQ14_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4AQ14_9STRA) HSP 1 Score: 71.6 bits (174), Expect = 9.160e-10 Identity = 64/196 (32.65%), Postives = 93/196 (47.45%), Query Frame = 1
Query: 241 KLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPA-----------H--------------------------LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDL 717
K +H +++ SRERNR+HA+KTRQRKK +L LQ +A QLK EQ +L+ ++E+ TA++L L + +G+ R V++ +E+ KLPA H L D S+ TP E +QIRRERNR+HAKRTR RK+L +++
Sbjct: 51 KRNHGERMKRSRERNRIHARKTRQRKKEQLQSLQTKAEQLKGEQINLKLCINEKNTANILCCLLSNNQGSQSSCAEDPR--------------------VEALLTRPEEEIPDPSKLPALQPLILPSGAQHSKRSNNNINDNLQSQQPPNDGIDYELLGKDRSKCTPAELDQIRRERNRMHAKRTRDRKRLFMEEM 226
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A6U5IV75_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A6U5IV75_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 2.280e-9 Identity = 67/190 (35.26%), Postives = 105/190 (55.26%), Query Frame = 1
Query: 253 DDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTG--PEG-------TDGETGASVRRGSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCD--LSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAILQQRAAS 789
+++LA SRERNR HA++TR RKKA+L LQ RAR+L+ E +L+++++E + A++LL L + PE ++ V G A + D+ A + ++ + K + D +LTP E E +RRERNR+HAK TR RKK+ +++ I + E RR+R +L + AAS
Sbjct: 36 EERLARSRERNREHARRTRLRKKAQLRILQDRARELQNENSNLKQSIEECSIANILLGLSSNVCPESIPQLSLSSESTPTPPVIFGKRKRAVSDADSDSTARKAAMASIPGLSNKNHINWKTGYYTDTDGNQKQLTPSELENLRRERNRMHAKMTRDRKKVFIASIDQTISLLEAENRRMREVLSKCAAS 225
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: BZP14_PHATC (bZIP transcription factor 14 n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=BZP14_PHATC) HSP 1 Score: 69.3 bits (168), Expect = 7.430e-9 Identity = 70/213 (32.86%), Postives = 106/213 (49.77%), Query Frame = 1
Query: 241 KLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDG------------------------ETGASVRRGSCSS----------AAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAH--LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLRAIL 771
K DD++ SRERNR+HA+KTRQRKK ++ L+ RA LK EQ L++ ++E+ TA++L+ L + + E A + G +S AA+ + G +V S DE ++ D + L D S+ TP+E +QIRRERNR+HAKRTR RK++ +++ R+ E+ LR L
Sbjct: 113 KADTDDRVQRSRERNRIHARKTRQRKKEQMQSLEGRATDLKHEQIRLKQIINEKNTANILVGLFSKGQSQSPNEDPRVEALMYRSVEEIPDPSKIPELPALILPGQHASKKIKVAVPVVAASPQSMSDGGGEEVASTSDVSGDEQQVPDDGIDYDLLGKDRSKCTPEELDQIRRERNRMHAKRTRDRKRIFTEEMAEMCRILEEENHLLRVHL 325
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S4VPU5_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4VPU5_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 1.290e-8 Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query: 268 ASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCA-----------------GTDVDSXXXXXXDEVELLDKLPAH-----------LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLE 720
ASRERNR+HA+KTRQRKK + +LQ RA +LK +Q L++ + E+ TA++LL + +G G+ V SA DA+ GT + + E + LP L D S+ TP E ++IRRERNR+HAKRTR RK++ +++E
Sbjct: 9 ASRERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEKGESGDVDPRVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEME 187
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S3HRZ3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HRZ3_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.460e-8 Identity = 66/184 (35.87%), Postives = 103/184 (55.98%), Query Frame = 1
Query: 232 KRTKLSHDDKLAASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPE--GTDGETGASVRR-----GSCSSAAATDDAAGCAGTDVDSXXXXXXDEVELLDKLPAHLSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLERQIRVSEKAIRRLR 762
KR KL+ D+++ RERNR+HA+ TR+RK+A++ LQ R ++L E+ L+ E + AS+L+ L + P+ G E G + + G SS DA +++ S +E+E+ ++ L D S + + E IRRERNR+HAK+TR RKK + ++E I E+ IR LR
Sbjct: 71 KRRKLNEDERVQRCRERNRIHARNTRERKRAQMDLLQQRIQELSDEKKSLENYEPEESVASILMSLSSSPKTRGKYFEDGVAAAKDFEQLGDESSKRFAADAIERIKSEI-SATLSDDEELEMNSEI---LLKDKSACSSADLEMIRRERNRMHAKKTRLRKKKMLSEMESIILGLERDIRDLR 250
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S4W4V3_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4W4V3_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 2.710e-8 Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query: 268 ASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCA-----------------GTDVDSXXXXXXDEVELLDKLPAH-----------LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLE 720
ASRERNR+HA+KTRQRKK + +LQ RA +LK +Q L++ + E+ TA++LL + +G G+ V SA DA+ GT + + E + LP L D S+ TP E ++IRRERNR+HAKRTR RK++ +++E
Sbjct: 9 ASRERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEKGESGDVDPRVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEME 187
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Match: A0A7S4RSS5_9STRA (Hypothetical protein (Fragment) n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4RSS5_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 3.620e-8 Identity = 63/179 (35.20%), Postives = 91/179 (50.84%), Query Frame = 1
Query: 268 ASRERNRVHAQKTRQRKKARLLDLQARARQLKAEQDHLQEAVDERATASLLLRLGTGPEGTDGETGASVRRGSCSSAAATDDAAGCA-----------------GTDVDSXXXXXXDEVELLDKLPAH-----------LSCDLSRLTPDEREQIRRERNRLHAKRTRTRKKLVFQDLE 720
ASRERNR+HA+KTRQRKK + +LQ RA +LK +Q L++ + E+ TA++LL + +G G+ V SA DA+ GT + + E + LP L D S+ TP E ++IRRERNR+HAKRTR RK++ +++E
Sbjct: 181 ASRERNRMHARKTRQRKKEHMQNLQDRADELKQKQIQLKQTIHEKNTANILLGMFCKEKGESGDVDPRVEDLLKRSAEDIPDASKIPELPALILPGQHSGKKKMGTSSSAAEEMAMAQHEAILALPVAGNPNDGIDYELLGKDRSKCTPAELDKIRRERNRMHAKRTRDRKRIFMEEME 359 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351027 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12548 ID=mRNA_12548|Name=jgi.p|Trimin1|351027|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1624bp|location=Sequence derived from alignment at Contig_78:512219..513842+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAGTACAGCTTCAGCATCCAGCGATGGTGGTGGCGGCCAGGCCGCCTAback to top protein sequence of jgi.p|Trimin1|351027 >Trimin1|351027|estExt_Genemark1.C_Ctg_780050 ID=Trimin1|351027|estExt_Genemark1.C_Ctg_780050|Name=jgi.p|Trimin1|351027|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=469bp MSTASASSDGGGGQAAYVLRPLKKRPLSDNAPPGSSARSTASTCSYSSHTback to top mRNA from alignment at Contig_78:512219..513842+ Legend: exonpolypeptideCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12548 ID=mRNA_12548|Name=jgi.p|Trimin1|351027|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1624bp|location=Sequence derived from alignment at Contig_78:512219..513842+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_78:512219..513842+ >mRNA_12548 ID=mRNA_12548|Name=jgi.p|Trimin1|351027|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1407bp|location=Sequence derived from alignment at Contig_78:512219..513842+ (Tribonema minus UTEX_B_3156 )back to top |