mRNA_12541 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|351024
Unique NamemRNA_12541
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A836C8P3_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P3_9STRA)

HSP 1 Score: 216 bits (550), Expect = 1.520e-68
Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1
Query:    1 MLARAARAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            MLARAARAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV
Sbjct:    1 MLARAARAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 106          
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A7S2XY71_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY71_9STRA)

HSP 1 Score: 166 bits (420), Expect = 4.390e-48
Identity = 76/100 (76.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query:   19 RAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            +AA+RIKELL  +  K+G+RLGVKRRGCNG SYT+NY DE P KDEEV + GVRVFV+P+A F++VGTTMD+EETELSSEFTFKNPNAKGSCGCGESFN 
Sbjct:   64 KAAERIKELLSGQDDKIGIRLGVKRRGCNGLSYTMNYVDEAPKKDEEVQDHGVRVFVEPMALFHVVGTTMDFEETELSSEFTFKNPNAKGSCGCGESFNT 163          
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: K3WSX7_GLOUD (Fe-S_biosyn domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSX7_GLOUD)

HSP 1 Score: 152 bits (385), Expect = 6.730e-43
Identity = 69/99 (69.70%), Postives = 85/99 (85.86%), Query Frame = 1
Query:   22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            AA+RI+ELL+ KP  +G+RLGV+ RGCNG SYT+NYAD+K   +EEV EKGVRVFV+P A F++VGTTMD++ T +SSEF F+NPNAKGSCGCGESFNV
Sbjct:   59 AAERIRELLDGKPDAIGIRLGVRTRGCNGLSYTMNYADKKEKLEEEVCEKGVRVFVEPKALFHVVGTTMDFQTTPVSSEFVFENPNAKGSCGCGESFNV 157          
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A8K1FNG8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNG8_PYTOL)

HSP 1 Score: 150 bits (378), Expect = 5.750e-42
Identity = 67/99 (67.68%), Postives = 85/99 (85.86%), Query Frame = 1
Query:   22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            AA+RI+ELL+ KPG V +RLGV+ RGCNG SYT+NYA++K   +EEV +KGVRVF++P A F++VGTTMD++ T +SSEF F+NPNAKGSCGCGESFNV
Sbjct:   50 AAERIRELLDNKPGSVAIRLGVRTRGCNGLSYTMNYAEQKEKMEEEVNDKGVRVFIEPKALFHVVGTTMDFQTTPVSSEFVFENPNAKGSCGCGESFNV 148          
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A8J9XA08_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9XA08_PHATR)

HSP 1 Score: 148 bits (373), Expect = 8.620e-42
Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 1
Query:   22 AADRIKELL--EAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            AADRI+ELL  E   G +G+RLG KRRGCNG SYTLNYA EKP KD  +   GV+VF++P+A F IVGT MDWEE+ELSSEFTF NPN+KG CGCGESFNV
Sbjct:    5 AADRIQELLRGENAKGAIGIRLGTKRRGCNGLSYTLNYALEKPEKDVAMESHGVQVFIEPMALFNIVGTVMDWEESELSSEFTFNNPNSKGECGCGESFNV 105          
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A662XSC3_9STRA (Fe-S_biosyn domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSC3_9STRA)

HSP 1 Score: 147 bits (372), Expect = 1.180e-41
Identity = 67/99 (67.68%), Postives = 83/99 (83.84%), Query Frame = 1
Query:   22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            AA RIKELL  KP  +G+RLGV+ RGCNG SYT+NYAD+K   +EEV++ G+RVFV+P A F++VGTTMD++ T +SSEF F+NPNAKGSCGCGESFNV
Sbjct:    6 AATRIKELLAGKPDAIGIRLGVRTRGCNGLSYTMNYADKKEKMEEEVSKNGIRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 104          
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: H3HBE5_PHYRM (Fe-S_biosyn domain-containing protein n=33 Tax=Peronosporaceae TaxID=4777 RepID=H3HBE5_PHYRM)

HSP 1 Score: 147 bits (372), Expect = 4.310e-41
Identity = 68/99 (68.69%), Postives = 83/99 (83.84%), Query Frame = 1
Query:   22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            AA RIKELL  KP  +G+RLGVK RGCNG SYT+NYAD+K   +EEV++ G+RVFV+P A F++VGTTMD++ T +SSEF F+NPNAKGSCGCGESFNV
Sbjct:   48 AAARIKELLANKPDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVSKNGIRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 146          
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A7S2XT99_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XT99_9STRA)

HSP 1 Score: 148 bits (374), Expect = 7.240e-41
Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 1
Query:   19 RAADRIKELLEAK--PGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            R A+RIK +L      G +G+RLGVKRRGCNG SYTLNYA+EKP +DEE+   GVRVF++P+A F +VGT MD+EETEL+SEFTF+NPN+KG CGCGESFNV
Sbjct:   85 RGANRIKAILSGDNAKGAIGIRLGVKRRGCNGLSYTLNYANEKPEQDEEMEAHGVRVFIEPMALFSVVGTVMDYEETELASEFTFQNPNSKGECGCGESFNV 186          
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A067CHF8_SAPPC (Fe-S_biosyn domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHF8_SAPPC)

HSP 1 Score: 145 bits (367), Expect = 1.530e-40
Identity = 68/99 (68.69%), Postives = 84/99 (84.85%), Query Frame = 1
Query:   22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            AADRIKELLE KP  +G+R+GV+ RGC+G SYT+NYA EK   +EEV +KGVRVFV+P A F+IVGTTMD++ T +S+EFTF+NPNAKG+CGCGESFN 
Sbjct:   33 AADRIKELLENKPDAIGLRIGVRTRGCSGLSYTMNYATEKIKFEEEVNDKGVRVFVEPKALFHIVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNA 131          
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A1E7EVJ1_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVJ1_9STRA)

HSP 1 Score: 147 bits (371), Expect = 2.990e-40
Identity = 71/102 (69.61%), Postives = 81/102 (79.41%), Query Frame = 1
Query:   19 RAADRIKELLEAK--PGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
            RAA RIKE+L+     G +G+RLGVKRRGCNG SYTLNYA EKP KD E+   GV VFV+P+A F +VGT MDWEE+ELSSEFTF NPN+KG CGCGESF V
Sbjct:   98 RAAIRIKEILQGDNAQGSIGIRLGVKRRGCNGLSYTLNYAFEKPEKDLEMDSSGVTVFVEPMALFSVVGTVMDWEESELSSEFTFTNPNSKGECGCGESFTV 199          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A836C8P3_9STRA1.520e-68100.00Fe-S_biosyn domain-containing protein n=1 Tax=Trib... [more]
A0A7S2XY71_9STRA4.390e-4876.00Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
K3WSX7_GLOUD6.730e-4369.70Fe-S_biosyn domain-containing protein n=1 Tax=Glob... [more]
A0A8K1FNG8_PYTOL5.750e-4267.68Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A8J9XA08_PHATR8.620e-4270.30Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A662XSC3_9STRA1.180e-4167.68Fe-S_biosyn domain-containing protein (Fragment) n... [more]
H3HBE5_PHYRM4.310e-4168.69Fe-S_biosyn domain-containing protein n=33 Tax=Per... [more]
A0A7S2XT99_9STRA7.240e-4167.65Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A067CHF8_SAPPC1.530e-4068.69Fe-S_biosyn domain-containing protein n=3 Tax=Sapr... [more]
A0A1E7EVJ1_9STRA2.990e-4069.61Fe-S_biosyn domain-containing protein n=1 Tax=Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_78contigContig_78:485834..486887 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|351024|estExt_Genemark1.C_Ctg_780044
DescriptionIron-sulfur cluster assembly protein. Source PGD
COG categoryP
Max annot lvl121069|Pythiales
EggNOG OGsCOG0316@1|root,KOG1120@2759|Eukaryota,1MGY8@121069|Pythiales
Evalue3e-47
Seed ortholog115417.EPrPW00000013861
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFeS cluster biogenesis
Ec32 orthologEc-11_002370.1
TranscriptId351346
TrackFilteredModels1
ProteinId351024
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351024gene_12541Tribonema minus UTEX_B_3156 geneContig_78 485834..486887 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12541_2exon_12541_2Tribonema minus UTEX_B_3156 exonContig_78 485834..486629 -
exon_12541_1exon_12541_1Tribonema minus UTEX_B_3156 exonContig_78 486870..486887 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_12541UTR3_12541Tribonema minus UTEX_B_3156 three_prime_UTRContig_78 485834..486326 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12541CDS_12541Tribonema minus UTEX_B_3156 CDSContig_78 486870..486887 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|351024Trimin1|351024|estExt_Genemark1.C_Ctg_780044Tribonema minus UTEX_B_3156 polypeptideContig_78 486327..486887 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12541 ID=mRNA_12541|Name=jgi.p|Trimin1|351024|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=814bp|location=Sequence derived from alignment at Contig_78:485834..486887- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGCTGGCGAGGGCAGCACGCGCAGCAGATCGGATCAAGGAGCTGCTAGA
GGCCAAACCTGGGAAGGTGGGGGTGAGGCTGGGGGTGAAGAGAAGAGGGT
GCAACGGTTACTCCTACACCCTCAACTACGCAGACGAGAAGCCTGCCAAG
GATGAGGAGGTGGCGGAGAAGGGCGTCAGGGTTTTCGTCGACCCCTTGGC
GACGTTTTACATAGTGGGTACGACGATGGACTGGGAAGAAACGGAGCTCA
GTTCGGAGTTTACCTTCAAGAACCCCAATGCGAAAGGGTCCTGTGGGTGT
GGTGAGAGCTTCAATGTTTAGGCATAGGCTGCAGGATGGTTTGCATGTGT
GCGTAAAGGTTGTGTACAGGGTTTGGCGCATACACACACAGCCGGTACCA
TCCAGGCTCGGTTGAAGCAGCACAGTGGTTGTCGAGGCCCGTGCAGTCGT
GCGGCAGGCTTCTGCGACTGCAGAGTGCTTGCTGCGCAGCACGTCGAAGC
CACGGGCTCTAGGCTCAGGAATGCAGTTGCAGCAGCAGAGCAGCATAGGC
CGCCTCATTGCACAGCAGCGACGCTGCGGCACCAGAGGCAGCAGCAGTTG
CGGCTGCAAGCACAGCAGCGGCTCTTAGCCTGAGATTCTCTCACATGGTG
CATCACGCACAGCCTCATCAGTGTCAACCGGCAGTTGTGCCAGGGGCACT
GGGCACAGGGTGGGGCGGTTGCAGCGTGGCGAGCTAGCAGCGGTTGTGGC
CTCATGTTGTCGTCCTGTACAGACCACAAACAACCCTATGTAATATATGT
ACACCGTCTTGTGG
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protein sequence of jgi.p|Trimin1|351024

>Trimin1|351024|estExt_Genemark1.C_Ctg_780044 ID=Trimin1|351024|estExt_Genemark1.C_Ctg_780044|Name=jgi.p|Trimin1|351024|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp
MLARAARAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAK
DEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGC
GESFNV*
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mRNA from alignment at Contig_78:485834..486887-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12541 ID=mRNA_12541|Name=jgi.p|Trimin1|351024|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1054bp|location=Sequence derived from alignment at Contig_78:485834..486887- (Tribonema minus UTEX_B_3156 )
ATGCTGGCGAGGGCAGCAGTGCGCTCAGGAGGCAGGGCTTGGCGTGCTTG TGTTTCTAGCACAGCTGGTAACGCTGGTCCGCCATTTCAATTACTCAGGG CGCTGTCGTCCACAGCTGCTGCTGCGCTGGACGGAGACCACGGCCAGCAA GAACATCAGCAATTGCCGACTGACGCATCACTTCCGGCGGCCGCAGCGAA GCCAGCTCCGAAGAGAAGGCTGAGGCGCGATTTCCCTCCTCCCATCACGC TGACAGAGCGCGCAGCAGATCGGATCAAGGAGCTGCTAGAGGCCAAACCT GGGAAGGTGGGGGTGAGGCTGGGGGTGAAGAGAAGAGGGTGCAACGGTTA CTCCTACACCCTCAACTACGCAGACGAGAAGCCTGCCAAGGATGAGGAGG TGGCGGAGAAGGGCGTCAGGGTTTTCGTCGACCCCTTGGCGACGTTTTAC ATAGTGGGTACGACGATGGACTGGGAAGAAACGGAGCTCAGTTCGGAGTT TACCTTCAAGAACCCCAATGCGAAAGGGTCCTGTGGGTGTGGTGAGAGCT TCAATGTTTAGGCATAGGCTGCAGGATGGTTTGCATGTGTGCGTAAAGGT TGTGTACAGGGTTTGGCGCATACACACACAGCCGGTACCATCCAGGCTCG GTTGAAGCAGCACAGTGGTTGTCGAGGCCCGTGCAGTCGTGCGGCAGGCT TCTGCGACTGCAGAGTGCTTGCTGCGCAGCACGTCGAAGCCACGGGCTCT AGGCTCAGGAATGCAGTTGCAGCAGCAGAGCAGCATAGGCCGCCTCATTG CACAGCAGCGACGCTGCGGCACCAGAGGCAGCAGCAGTTGCGGCTGCAAG CACAGCAGCGGCTCTTAGCCTGAGATTCTCTCACATGGTGCATCACGCAC AGCCTCATCAGTGTCAACCGGCAGTTGTGCCAGGGGCACTGGGCACAGGG TGGGGCGGTTGCAGCGTGGCGAGCTAGCAGCGGTTGTGGCCTCATGTTGT CGTCCTGTACAGACCACAAACAACCCTATGTAATATATGTACACCGTCTT GTGG
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Coding sequence (CDS) from alignment at Contig_78:485834..486887-

>mRNA_12541 ID=mRNA_12541|Name=jgi.p|Trimin1|351024|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_78:485834..486887- (Tribonema minus UTEX_B_3156 )
ATGCTGGCGAGGGCAGCACGCGCAGCAGATCGGATCAAGGAGCTGCTAGA
GGCCAAACCTGGGAAGGTGGGGGTGAGGCTGGGGGTGAAGAGAAGAGGGT
GCAACGGTTACTCCTACACCCTCAACTACGCAGACGAGAAGCCTGCCAAG
GATGAGGAGGTGGCGGAGAAGGGCGTCAGGGTTTTCGTCGACCCCTTGGC
GACGTTTTACATAGTGGGTACGACGATGGACTGGGAAGAAACGGAGCTCA
GTTCGGAGTTTACCTTCAAGAACCCCAATGCGAAAGGGTCCTGTGGGTGT
GGTGAGAGCTTCAATGTTTAG
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