mRNA_12541 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A836C8P3_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8P3_9STRA) HSP 1 Score: 216 bits (550), Expect = 1.520e-68 Identity = 106/106 (100.00%), Postives = 106/106 (100.00%), Query Frame = 1
Query: 1 MLARAARAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
MLARAARAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV
Sbjct: 1 MLARAARAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 106
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A7S2XY71_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XY71_9STRA) HSP 1 Score: 166 bits (420), Expect = 4.390e-48 Identity = 76/100 (76.00%), Postives = 88/100 (88.00%), Query Frame = 1
Query: 19 RAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
+AA+RIKELL + K+G+RLGVKRRGCNG SYT+NY DE P KDEEV + GVRVFV+P+A F++VGTTMD+EETELSSEFTFKNPNAKGSCGCGESFN
Sbjct: 64 KAAERIKELLSGQDDKIGIRLGVKRRGCNGLSYTMNYVDEAPKKDEEVQDHGVRVFVEPMALFHVVGTTMDFEETELSSEFTFKNPNAKGSCGCGESFNT 163
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: K3WSX7_GLOUD (Fe-S_biosyn domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WSX7_GLOUD) HSP 1 Score: 152 bits (385), Expect = 6.730e-43 Identity = 69/99 (69.70%), Postives = 85/99 (85.86%), Query Frame = 1
Query: 22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
AA+RI+ELL+ KP +G+RLGV+ RGCNG SYT+NYAD+K +EEV EKGVRVFV+P A F++VGTTMD++ T +SSEF F+NPNAKGSCGCGESFNV
Sbjct: 59 AAERIRELLDGKPDAIGIRLGVRTRGCNGLSYTMNYADKKEKLEEEVCEKGVRVFVEPKALFHVVGTTMDFQTTPVSSEFVFENPNAKGSCGCGESFNV 157
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A8K1FNG8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNG8_PYTOL) HSP 1 Score: 150 bits (378), Expect = 5.750e-42 Identity = 67/99 (67.68%), Postives = 85/99 (85.86%), Query Frame = 1
Query: 22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
AA+RI+ELL+ KPG V +RLGV+ RGCNG SYT+NYA++K +EEV +KGVRVF++P A F++VGTTMD++ T +SSEF F+NPNAKGSCGCGESFNV
Sbjct: 50 AAERIRELLDNKPGSVAIRLGVRTRGCNGLSYTMNYAEQKEKMEEEVNDKGVRVFIEPKALFHVVGTTMDFQTTPVSSEFVFENPNAKGSCGCGESFNV 148
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A8J9XA08_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9XA08_PHATR) HSP 1 Score: 148 bits (373), Expect = 8.620e-42 Identity = 71/101 (70.30%), Postives = 81/101 (80.20%), Query Frame = 1
Query: 22 AADRIKELL--EAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
AADRI+ELL E G +G+RLG KRRGCNG SYTLNYA EKP KD + GV+VF++P+A F IVGT MDWEE+ELSSEFTF NPN+KG CGCGESFNV
Sbjct: 5 AADRIQELLRGENAKGAIGIRLGTKRRGCNGLSYTLNYALEKPEKDVAMESHGVQVFIEPMALFNIVGTVMDWEESELSSEFTFNNPNSKGECGCGESFNV 105
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A662XSC3_9STRA (Fe-S_biosyn domain-containing protein (Fragment) n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XSC3_9STRA) HSP 1 Score: 147 bits (372), Expect = 1.180e-41 Identity = 67/99 (67.68%), Postives = 83/99 (83.84%), Query Frame = 1
Query: 22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
AA RIKELL KP +G+RLGV+ RGCNG SYT+NYAD+K +EEV++ G+RVFV+P A F++VGTTMD++ T +SSEF F+NPNAKGSCGCGESFNV
Sbjct: 6 AATRIKELLAGKPDAIGIRLGVRTRGCNGLSYTMNYADKKEKMEEEVSKNGIRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 104
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: H3HBE5_PHYRM (Fe-S_biosyn domain-containing protein n=33 Tax=Peronosporaceae TaxID=4777 RepID=H3HBE5_PHYRM) HSP 1 Score: 147 bits (372), Expect = 4.310e-41 Identity = 68/99 (68.69%), Postives = 83/99 (83.84%), Query Frame = 1
Query: 22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
AA RIKELL KP +G+RLGVK RGCNG SYT+NYAD+K +EEV++ G+RVFV+P A F++VGTTMD++ T +SSEF F+NPNAKGSCGCGESFNV
Sbjct: 48 AAARIKELLANKPDAIGIRLGVKTRGCNGLSYTMNYADKKEKMEEEVSKNGIRVFVEPKALFHVVGTTMDFQITPVSSEFVFENPNAKGSCGCGESFNV 146
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A7S2XT99_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XT99_9STRA) HSP 1 Score: 148 bits (374), Expect = 7.240e-41 Identity = 69/102 (67.65%), Postives = 84/102 (82.35%), Query Frame = 1
Query: 19 RAADRIKELLEAK--PGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
R A+RIK +L G +G+RLGVKRRGCNG SYTLNYA+EKP +DEE+ GVRVF++P+A F +VGT MD+EETEL+SEFTF+NPN+KG CGCGESFNV
Sbjct: 85 RGANRIKAILSGDNAKGAIGIRLGVKRRGCNGLSYTLNYANEKPEQDEEMEAHGVRVFIEPMALFSVVGTVMDYEETELASEFTFQNPNSKGECGCGESFNV 186
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A067CHF8_SAPPC (Fe-S_biosyn domain-containing protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHF8_SAPPC) HSP 1 Score: 145 bits (367), Expect = 1.530e-40 Identity = 68/99 (68.69%), Postives = 84/99 (84.85%), Query Frame = 1
Query: 22 AADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
AADRIKELLE KP +G+R+GV+ RGC+G SYT+NYA EK +EEV +KGVRVFV+P A F+IVGTTMD++ T +S+EFTF+NPNAKG+CGCGESFN
Sbjct: 33 AADRIKELLENKPDAIGLRIGVRTRGCSGLSYTMNYATEKIKFEEEVNDKGVRVFVEPKALFHIVGTTMDYKITPVSAEFTFENPNAKGTCGCGESFNA 131
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Match: A0A1E7EVJ1_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EVJ1_9STRA) HSP 1 Score: 147 bits (371), Expect = 2.990e-40 Identity = 71/102 (69.61%), Postives = 81/102 (79.41%), Query Frame = 1
Query: 19 RAADRIKELLEAK--PGKVGVRLGVKRRGCNGYSYTLNYADEKPAKDEEVAEKGVRVFVDPLATFYIVGTTMDWEETELSSEFTFKNPNAKGSCGCGESFNV 318
RAA RIKE+L+ G +G+RLGVKRRGCNG SYTLNYA EKP KD E+ GV VFV+P+A F +VGT MDWEE+ELSSEFTF NPN+KG CGCGESF V
Sbjct: 98 RAAIRIKEILQGDNAQGSIGIRLGVKRRGCNGLSYTLNYAFEKPEKDLEMDSSGVTVFVEPMALFSVVGTVMDWEESELSSEFTFTNPNSKGECGCGESFTV 199 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351024 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following three_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12541 ID=mRNA_12541|Name=jgi.p|Trimin1|351024|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=814bp|location=Sequence derived from alignment at Contig_78:485834..486887- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGCTGGCGAGGGCAGCACGCGCAGCAGATCGGATCAAGGAGCTGCTAGAback to top protein sequence of jgi.p|Trimin1|351024 >Trimin1|351024|estExt_Genemark1.C_Ctg_780044 ID=Trimin1|351024|estExt_Genemark1.C_Ctg_780044|Name=jgi.p|Trimin1|351024|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=107bp MLARAARAADRIKELLEAKPGKVGVRLGVKRRGCNGYSYTLNYADEKPAKback to top mRNA from alignment at Contig_78:485834..486887- Legend: polypeptideexonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12541 ID=mRNA_12541|Name=jgi.p|Trimin1|351024|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1054bp|location=Sequence derived from alignment at Contig_78:485834..486887- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_78:485834..486887- >mRNA_12541 ID=mRNA_12541|Name=jgi.p|Trimin1|351024|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=321bp|location=Sequence derived from alignment at Contig_78:485834..486887- (Tribonema minus UTEX_B_3156 )back to top |