mRNA_12530 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: A0A835YLL2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLL2_9STRA) HSP 1 Score: 803 bits (2074), Expect = 7.260e-290 Identity = 405/407 (99.51%), Postives = 405/407 (99.51%), Query Frame = 3
Query: 27 MAGIDAVMDAMDRQAEEAEAAAXXXXXXXXXXIEAQLPVMHPHEGQQFWYDGIHVKYRRIDDAAMEEAVAAKARLRTAGMCSVCMEEQQVVGAEYLHATESFCTSEAYRDATAVHDSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCPFCPLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLMEFAHYSAGSADFERALPGALAADLHLFEAGAISATVFVERIAAAVDGDIAQPCAVTAEQDPELNHVVPETTAKVWALMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGFCFESRLQELGLLHTEVPPEPGAELVRETSGPAAVDHDAHAATDA 1247
MAGIDAVMDAMDRQAEEAEAAA XXXXXXXX IEAQLPVMHPHEGQQFWYDGIHVKYRRIDDAAMEEAVAAKARLRTAGMCSVCMEEQQVVGAEYLHATESFCTSEAYRDATAVHDSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCPFCPLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLMEFAHYSAGSADFERALPGALAADLHLFEAGAISATVFVERIAAAVDGDIAQPCAVTAEQDPELNHVVPETTAKVWALMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGFCFESRLQELGLLHTEVPPEPGAELVRETSGPAAVDHDAHAATDA
Sbjct: 1 MAGIDAVMDAMDRQAEEAEAAALXXXXXXXXAIEAQLPVMHPHEGQQFWYDGIHVKYRRIDDAAMEEAVAAKARLRTAGMCSVCMEEQQVVGAEYLHATESFCTSEAYRDATAVHDSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCPFCPLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLMEFAHYSAGSADFERALPGALAADLHLFEAGAISATVFVERIAAAVDGDIAQPCAVTAEQDPELNHVVPETTAKVWALMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGFCFESRLQELGLLHTEVPPEPGAELVRETSGPAAVDHDAHAATDA 407
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: D7G6K5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6K5_ECTSI) HSP 1 Score: 170 bits (431), Expect = 1.410e-41 Identity = 108/325 (33.23%), Postives = 159/325 (48.92%), Query Frame = 3
Query: 261 GMCSVCMEE-QQVVGAEYLHATESFCTSEAYRDATAVHDSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCPFCPLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLM-----EFAHYSA----------------------GSADFERALPGALAADLHLFEAGAISAT-------VFVERIAAAVDGDIAQP--CAVTAEQ---DPELNHVVPETTAKVWALMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGF 1115
G C VC+E+ V+ + +LH S + D D T AC CL YFT IV G++G CPRM+C CP VV E W+ LVE F++RAA LL++QC CH+R ++M + + SA +A + P + + + + S+T +F + + G P C + E +P + E+ ++ L+ + C++D ERRA LH RF+ +P+V T CC ++HCY CRV HH QTC +Y+A + V CP C +Y+VK DGC S+SC+CGH F
Sbjct: 59 GACMVCLEDCDNVLDSAWLHR---LAASSSASDVGGT-DCTVTACVSCLKTYFTGIVEAGFDGACPRMRCMCCPRVVCEWVWAPLVEATVLETFQKRAATLLSIQCGMCHSRGTIMVKPPADHCYSSALDKLMAMIASGLAPATPPSATTATAITTQGSPANIKSSTNGGDNSVASSTCNAQRLEIFRASLERYISGHEIDPSLCYIALEAAIANPGIGQAAQESRDELMVLL---MSCVEDSERRANLHIRFIRSNPMVVTQCCKSLHCYPCRVVGGHHPQTCEQYEAGR--GHQDVCKCPGCGVYVVKGDGCDSISCICGHDF 374
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: A0A7S3UWB4_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWB4_HETAK) HSP 1 Score: 166 bits (419), Expect = 9.860e-41 Identity = 100/266 (37.59%), Postives = 146/266 (54.89%), Query Frame = 3
Query: 384 VACEGCLAKYFTAIVAEGYNGVCPRMKCPFC-PLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLMEFAHYSAGSADFERALPG------------ALAADLHLFEAGAISATVFVERIAAAVDGDIAQPCAVTAEQDPELNHVVPETTAKVWA-LMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGFCFESRLQE 1139
VAC+ C + +F IV+E Y+G+ +M CP C + VP W+ +PE LF++RAAILL+LQC+ CHTR L F + D ++ + G A + L LF +G+I+ F + I + D Q + ++ P W +M+ +L I+D +RAVLH R+L P TPCC V C+RCR G H GQTC++ AA + + E++ TCP C+I +VK DGCSSV+CVCG F ++ R +E
Sbjct: 93 VACKSCASSHFEGIVSESYDGILRKMTCPSCISMEVPSSTWANFTDPEMLALFQRRAAILLSLQCAGCHTRKDL--FIQDQSLPTDADKHMEGIETMLVASEKRDAFSQALGLFTSGSINEEDFFQLICITLFPDQFQSS--SPDEGP-------------WEDVMKPILLSIRDARQRAVLHLRYLRSFPKCSTPCCKRVQCFRCRTGQWHEGQTCSQVLAAQFQNSEVL-TCPACAIQLVKGDGCSSVTCVCGKTFNWDQRKKE 340
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: A0A7S4DEH3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DEH3_HETAK) HSP 1 Score: 167 bits (422), Expect = 1.830e-40 Identity = 102/259 (39.38%), Postives = 140/259 (54.05%), Query Frame = 3
Query: 372 DSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCPFC-PLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLMEFAHYSAGSADFERALPGALAADLHLFEAGAISATVFVERIAAAVDGDIAQPCAVTAEQDPELNHVVPETTAKVWALM-REVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGFCFESRLQEL 1142
D +C CL +F +IV +GY+G+ +M CP C + VP WS V+ T LF++RAAILL+LQCS CH+R L F + ++ E+ L L L AG + + R D + A + P + A WA R VL ++D RAVLH R+L HP V T CC A C+RCR G H GQTCAE AA+Y +L+ TC +C + +VK DGCSSV+CVCG+ F ++ R +E+
Sbjct: 89 DCPLTSCTACLKTHFESIVKQGYDGILKKMTCPGCISMTVPSDAWSPFVDASTLELFQRRAAILLSLQCSGCHSRKDL--FIPETELPSNPEQHLKNTLKPLLENEHAGDQEYRLALGRFVRGEDNEDAFFQQLRTRFFPGKFAAAEDPDAGPWAAAARPVLLSVRDARARAVLHLRYLREHPKVTTGCCQATQCFRCRTGRWHAGQTCAEVAAASYQHSDLL-TCASCGLQLVKGDGCSSVTCVCGNHFDWDQRCREV 344
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: A0A7S4D641_HETAK (Hypothetical protein (Fragment) n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D641_HETAK) HSP 1 Score: 142 bits (358), Expect = 6.390e-34 Identity = 97/292 (33.22%), Postives = 137/292 (46.92%), Query Frame = 3
Query: 267 CSVCMEEQQVVGAEYLHATESFCTSEAYRDATAVHDSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCPFC-PLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLM--EFAHYSAGSADFERALPGALAADLHLFEAGAISATVFVERIAAAVDGDIAQPCAVTAEQDPELNHVVPETTAKVWALMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEEL---VATCPNCSIYIVKNDGCSSVSCVCGHGFCFE 1124
C +C+E + EY SFC S D AC+ C+AK+F ++ GY+G+ +M CP C VP W + + L+ +RAAILLTLQCS CH R +++ E + + +A+ L + F G I+ ERI+ E W +M+ +L+ I+D RA L+ R+L +P V T CC A C+RCR H G TC E + +E+L V CP C I +VK DGC V+CVCGHGF +E
Sbjct: 80 CDICLETLSSLELEY-----SFCGS----------DCPLKACKECIAKHFKDTISSGYDGILRKMTCPACVKRSVPVSLWGPVCSSNQTTLYSRRAAILLTLQCSGCHERKTILPDEDENQVLPTDGMPKAVKEELLMEFERFNDGKINDQELYERIST--------------------YFFSFENLPNPWLVMQPILQKIRDEGFRAELYLRYLRHYPKVSTICCEAEQCFRCRTEDWHDGMTCEEMRKEL-EAEQLSDDVLNCPECDIQLVKGDGCEWVTCVCGHGFDWE 335
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: A0A7S3XSF2_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XSF2_HETAK) HSP 1 Score: 137 bits (346), Expect = 8.510e-33 Identity = 87/253 (34.39%), Postives = 125/253 (49.41%), Query Frame = 3
Query: 384 VACEGCLAKYFTAIVAEGYNGVCPRMKCPFC-PLVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLM--EFAHYSAGSADFERALPGALAADLHLFEAGAISATVFVERIAAAVDGDIAQPCAVTAEQDPELNHVVPETTAKVWALMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEEL---VATCPNCSIYIVKNDGCSSVSCVCGHGFCFE 1124
+AC+ C+AK+F ++ GY+G+ +M CP C VP W + + L+ +RAAILLTLQCS CH R +++ E + + +A+ L + F G I+ ERI+ E W +M+ +L+ I+D RA L+ R+L +P V T CC A C+RCR H G TC E + +E+L V CP C I +VK DGC V+CVCGHGF +E
Sbjct: 41 IACKECIAKHFKDTISSGYDGILRKMTCPACVKRSVPVSLWGPVCSSNQTTLYSRRAAILLTLQCSGCHERKTILPDEDENQVLPTDGMPKAVKEELLMEFERFNDGKINDQELYERIST--------------------YFFSFENLPNPWLVMQPILQKIRDEGFRAELYLRYLRHYPKVSTICCEAEQCFRCRTEDWHDGMTCEEMRKEL-EAEQLSDDVLNCPECDIQLVKGDGCEWVTCVCGHGFDWE 272
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: A0A7S2G880_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G880_9STRA) HSP 1 Score: 139 bits (350), Expect = 1.130e-31 Identity = 91/261 (34.87%), Postives = 131/261 (50.19%), Query Frame = 3
Query: 390 CEGCLAKYFTAIVAEGYNGVCPRMKCPFCP-LVVPEMRWSALVEPETSRLFRQRAAILLTLQCSSCHTRCSLM------EFAHYSAGSADFERALPGALAADLHLFEAGAISATVFVERI--AAAVDGD-IAQPCAVTAEQDPELNHVVPETTAKVWALMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGFCFESRLQEL 1142
C+GC +Y IV +GY+G CP++KCP CP ++P +W+ +V+ T RA LL+LQCSSCH R SLM AH G + A A F S + ER A +GD +AQ + D +V + ++ +V+ I D ERRA H ++ P T C A HC+RC + H G +CAEYQ + E++V CP C + + K DGC+SV+CVCG F ++ L ++
Sbjct: 124 CKGCAKQYVEHIVKDGYDGACPQVKCPACPGRIIPSSKWAPVVDKATKDAIGDRAMKLLSLQCSSCHARKSLMIGHDPMTLAH--TGDEAWNTAATTAEQQLKVTFGQHYKSFVMARERYLRGAIKEGDFLAQLTPLCGVADA----IVKGSAKGPCPVVLQVINSITDPERRATFHVAYMRKFPECWTRCHKARHCFRCHITGYHDGMSCAEYQMSKATVEDIVP-CPQCGVQLTKGDGCASVNCVCGKSFNWDQELAKV 377
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: A0A7S2SQB9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQB9_9STRA) HSP 1 Score: 124 bits (310), Expect = 4.260e-26 Identity = 93/326 (28.53%), Postives = 146/326 (44.79%), Query Frame = 3
Query: 213 AAMEEAVAAKARLRTAGM---CSVCMEEQQVVGAEYLHATESFCTSEAYRDATAVHDSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCPFCPL-VVPEMRWSALVEPETSRL--------FRQRAAILLTLQCSSCHTRCSLMEFAHYSAGSADFERALPGALAADLHLFEAGAISATVFVERIAAAVDGDIAQPCAVTAEQ----DPELNHVVPETTAKVWALMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGFCFESRLQEL 1142
A ++E AR AG+ C+VC++ + +VG FC D + C CLA++ V GY G RM CP P + RW V + F A +L+LQC SCH R LM A ++A+ A+ +++ ++ + + + G ++Q + + PE P + L+ L I+D ER+A LH FL P + CC +VHC+RC + H +TC E+QA+ E++V CP C + + K DGCSSVSCVCG+ F +++ + ++
Sbjct: 10 APLQEPTVQDARA-VAGLLVPCAVCLDPKALVG--------GFCGP----------DCQTIMCSSCLAEHCRVTVDSGYPGAAIRMHCPIHPKRIAAAGRWQPAVMEHLGQADGKALIDRFTSHARGILSLQCGSCHARRDLMR----PTSKALADKAMQALQASHAPVYD------HLYKQHVEPFLVGAVSQEHVIVQCEAFLPKPEFALTHPSGKDTAFGLL---LDSIEDDERKATLHYAFLRRFPKCISNCCKSVHCFRCHISGFHTNKTCEEFQASRTTVEDVVP-CPGCGVQLTKGDGCSSVSCVCGNSFNWDTEVAKI 302
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: A0A7S1TQX8_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TQX8_9STRA) HSP 1 Score: 122 bits (306), Expect = 1.450e-25 Identity = 104/335 (31.04%), Postives = 149/335 (44.48%), Query Frame = 3
Query: 318 ATESFCTSEAYRDATAVHDSTHVACEGCLAKYFTAIVAEGYNGVCPRMKCP--FCPLVVPEMRWSALVEPETS-------RLFRQRAAILLTLQCSSCHTR------------------------------CSLMEFAHYSAG-------SADFERALPGALAADL-----------HLFEAGAISATV--FVERIAAAVDGDIAQPCAVTAEQDPELNHVVPETTAKVWALMREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGFCFESRLQELG 1145
A E+ EA D AV C CL Y + V Y G C ++CP C ++P W AL++ +T R F + A +L+LQC SCH+R CS+ + A +A A+P LA+D+ HL +AGA A + V ++A A +G + T H P + L+ VL I D ERRA L SR L+LHP ++ CC HCYRC+ H G +C Q +E++V TC NC ++IVK DGCSS++CVCG F +++R+ ++G
Sbjct: 241 AEETKGAEEADGDGDAVPCCGMTICRPCLGAYVQSHVDALYLGACKPLRCPDPACRAILPMPLWLALLDQKTGDERAGLRRQFIKYAKSVLSLQCGSCHSRGTLHVGDYPNAPSCFPLKPGCVHPLSMAGACSVAKSKAVVAALGREVTTTAPGGEAIPPKLASDVMEVPLMKYMRGHL-DAGACWAALKRCVPQLACASEGLADEEYCPTVP-----GHADPTAQYEKELLVNAVLCRIPDPERRAALLSRVLALHPKAKSNCCAYTHCYRCKTKGFHDGVSCDANQGWDRGAEQVV-TCHNCGVWIVKGDGCSSINCVCGANFNWDTRVTQMG 568
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Match: A0A7S3YGS0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YGS0_HETAK) HSP 1 Score: 100 bits (248), Expect = 1.220e-20 Identity = 48/98 (48.98%), Postives = 64/98 (65.31%), Query Frame = 3
Query: 837 MREVLKCIQDWERRAVLHSRFLSLHPVVQTPCCMAVHCYRCRVGHVHHGQTCAEYQAATYPSEELVATCPNCSIYIVKNDGCSSVSCVCGHGFCFESR 1130
+R L + D ERRA+LH RFL P V+T CC A C+RCR H G+TCA+ QA Y + +V+ C C + +VK DGCSSV+CVCGH F +++R
Sbjct: 10 VRPALARVADPERRALLHLRFLRRAPRVRTKCCRADQCFRCRTRAWHAGRTCAQVQAELYKDDTIVS-CERCGVALVKGDGCSSVTCVCGHNFDWDAR 106 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|351016 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 21
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following five_prime_UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12530 ID=mRNA_12530|Name=jgi.p|Trimin1|351016|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1568bp|location=Sequence derived from alignment at Contig_78:403138..409236+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. GAACAAGGCAAAACAGCCGCTCAACAATGGCGGGTATCGATGCTGTAATGback to top protein sequence of jgi.p|Trimin1|351016 >Trimin1|351016|estExt_Genemark1.C_Ctg_780035 ID=Trimin1|351016|estExt_Genemark1.C_Ctg_780035|Name=jgi.p|Trimin1|351016|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=514bp MAGIDAVMDAMDRQAEEAEAAALAADAAAEAAIEAQLPVMHPHEGQQFWYback to top mRNA from alignment at Contig_78:403138..409236+ Legend: exonfive_prime_UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12530 ID=mRNA_12530|Name=jgi.p|Trimin1|351016|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=6099bp|location=Sequence derived from alignment at Contig_78:403138..409236+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_78:403138..409236+ >mRNA_12530 ID=mRNA_12530|Name=jgi.p|Trimin1|351016|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=1542bp|location=Sequence derived from alignment at Contig_78:403138..409236+ (Tribonema minus UTEX_B_3156 )back to top |