Trimin1|352271|estExt_Genemark1.C_Ctg_1140002 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|352271
Unique NameTrimin1|352271|estExt_Genemark1.C_Ctg_1140002
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length209
Homology
BLAST of jgi.p|Trimin1|352271 vs. uniprot
Match: A0A835ZMQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMQ3_9STRA)

HSP 1 Score: 430 bits (1106), Expect = 1.050e-152
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0
Query:    1 MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITADKCGNAPGNRGLPPAGDTVLAANAMGTALTAFSSGIVAEDCVVMRSGVAAVVRDEGPSSSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISECGYTGQRVQPWRRGWDSAKP 208
            MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITADKCGNAPGNRGLPPAGDTVLAANAMGTALTAFSSGIVAEDCVVMRSGVAAVVRDEGPSSSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISECGYTGQRVQPWRRGWDSAKP
Sbjct:    1 MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITADKCGNAPGNRGLPPAGDTVLAANAMGTALTAFSSGIVAEDCVVMRSGVAAVVRDEGPSSSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISECGYTGQRVQPWRRGWDSAKP 208          
BLAST of jgi.p|Trimin1|352271 vs. uniprot
Match: A0A835YVL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL6_9STRA)

HSP 1 Score: 205 bits (521), Expect = 4.110e-63
Identity = 131/272 (48.16%), Postives = 149/272 (54.78%), Query Frame = 0
Query:    1 MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITAD--------------KCGNAPGNRGLPPAGDT----VLAANAM------------------------------------------GTALTAFSSGIVAEDCVVMRSG--VAAVVRDE-GPSSSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISEC-GYTGQRVQPWRRGWDSAKP 208
            MWELDPFAVLGPAGVIQ                         LINE+LYDTKPSYTV+SASDL Q + DC+FGDC L+TAD              +  +   +    P+  T    +L ANAM                                          GT L A   GIVAEDC V  +G  + AVVRD+ GPSS  GFLSMRGC +EDNAWGAF GKDTPA V+RA+LAANTFRRN  +DI+E   YTGQRVQPWRRGWDSAKP
Sbjct:    1 MWELDPFAVLGPAGVIQL------------------------LINEFLYDTKPSYTVNSASDLHQALKDCNFGDCNLLTADVNVETHLQVDGCRLQGAHVGASNARRPSITTHRGPLLVANAMVEGLNLTTGDEEQFNPDNCFPGVEASGTCGALLRRCCITSYQGTTLMACCCGIVAEDCGVSSNGCFLGAVVRDDDGPSSGPGFLSMRGCAVEDNAWGAFLGKDTPAGVKRAMLAANTFRRNSHEDITEIYSYTGQRVQPWRRGWDSAKP 248          
BLAST of jgi.p|Trimin1|352271 vs. uniprot
Match: A0A835ZEP0_9STRA (F-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP0_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.300e-43
Identity = 118/318 (37.11%), Postives = 144/318 (45.28%), Query Frame = 0
Query:    1 MWELDPFAVLGPAGVIQ-----------------------------KGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITA---------------------DKCGN--APGNRGLPP----------------------AGDTVLAANA----------------------------MGTALTAFSSGIVAEDCVVMRSGV--AAVVR----DEGPS-SSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISEC-GYTGQRVQPWRRGWDSAKP 208
            MWELDPFAV+GPAGVIQ                             K  +F+  T+LR C  H+   D + L+N++LYDTKPS+ V+S+  L   +  C  G CI + A                     ++C N  AP NRG  P                      AG   L   +                             G+AL A S GIVAE C +   GV   AVVR    ++ P+    G LSMRGC++ DN WGAF GKD PADV RAVLAANTF  N  +DI+E   Y GQRVQPWRRGWD  KP
Sbjct:   60 MWELDPFAVMGPAGVIQAAAHLSGSWLQLARRLGNPTCRDAWRCPNKAFYFNKKTLLRACRQHR-QGDHEMLMNDFLYDTKPSFCVNSSKALLAALAACHDGACIRVAAPISVGETLYVRLCRLQGHPPVERCCNEGAPCNRGAKPTLHLKHGSLAPLCAIVEGLRIEAGSRWLNGESWGPGAFFPAVSAAIPNGGLLRRCDVVSYQGSALVANSGGIVAEHCTLSTDGVFLGAVVRNAEDEKRPAIGGAGTLSMRGCSVMDNQWGAFLGKDAPADVTRAVLAANTFGHNRHEDIAELYHYAGQRVQPWRRGWDDGKP 376          
BLAST of jgi.p|Trimin1|352271 vs. uniprot
Match: A0A835YVB6_9STRA (DM10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 8.390e-14
Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 0
Query:    1 MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITAD 81
            MWELDPFA LGPA  IQ+                        LINE+LY+TKP+YTV SASDLQ+ + DC FGDCI +TAD
Sbjct:    1 MWELDPFATLGPAAAIQR------------------------LINEFLYNTKPTYTVHSASDLQRAILDCGFGDCIRLTAD 57          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352271 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZMQ3_9STRA1.050e-152100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVL6_9STRA4.110e-6348.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEP0_9STRA1.300e-4337.11F-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YVB6_9STRA8.390e-1451.85DM10 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:13901..16907 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352271mRNA_15041Tribonema minus UTEX_B_3156 mRNAContig_114 13659..16907 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|352271|estExt_Genemark1.C_Ctg_1140002 ID=Trimin1|352271|estExt_Genemark1.C_Ctg_1140002|Name=jgi.p|Trimin1|352271|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=209bp
MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYD
TKPSYTVSSASDLQQQMDDCDFGDCILITADKCGNAPGNRGLPPAGDTVL
AANAMGTALTAFSSGIVAEDCVVMRSGVAAVVRDEGPSSSKGFLSMRGCT
LEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISECGYTGQRVQPWR
RGWDSAKP*
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