mRNA_15041 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|352271
Unique NamemRNA_15041
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|352271 vs. uniprot
Match: A0A835ZMQ3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZMQ3_9STRA)

HSP 1 Score: 430 bits (1106), Expect = 2.580e-151
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 1 
Query:    1 MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITADKCGNAPGNRGLPPAGDTVLAANAMGTALTAFSSGIVAEDCVVMRSGVAAVVRDEGPSSSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISECGYTGQRVQPWRRGWDSAKP 624
            MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITADKCGNAPGNRGLPPAGDTVLAANAMGTALTAFSSGIVAEDCVVMRSGVAAVVRDEGPSSSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISECGYTGQRVQPWRRGWDSAKP
Sbjct:    1 MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITADKCGNAPGNRGLPPAGDTVLAANAMGTALTAFSSGIVAEDCVVMRSGVAAVVRDEGPSSSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISECGYTGQRVQPWRRGWDSAKP 208
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BLAST of jgi.p|Trimin1|352271 vs. uniprot
Match: A0A835YVL6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVL6_9STRA)

HSP 1 Score: 205 bits (521), Expect = 6.710e-62
Identity = 131/272 (48.16%), Postives = 149/272 (54.78%), Query Frame = 1 
Query:    1 MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITAD--------------KCGNAPGNRGLPPAGDT----VLAANAM------------------------------------------GTALTAFSSGIVAEDCVVMRSG--VAAVVRDE-GPSSSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISEC-GYTGQRVQPWRRGWDSAKP 624
            MWELDPFAVLGPAGVIQ                         LINE+LYDTKPSYTV+SASDL Q + DC+FGDC L+TAD              +  +   +    P+  T    +L ANAM                                          GT L A   GIVAEDC V  +G  + AVVRD+ GPSS  GFLSMRGC +EDNAWGAF GKDTPA V+RA+LAANTFRRN  +DI+E   YTGQRVQPWRRGWDSAKP
Sbjct:    1 MWELDPFAVLGPAGVIQL------------------------LINEFLYDTKPSYTVNSASDLHQALKDCNFGDCNLLTADVNVETHLQVDGCRLQGAHVGASNARRPSITTHRGPLLVANAMVEGLNLTTGDEEQFNPDNCFPGVEASGTCGALLRRCCITSYQGTTLMACCCGIVAEDCGVSSNGCFLGAVVRDDDGPSSGPGFLSMRGCAVEDNAWGAFLGKDTPAGVKRAMLAANTFRRNSHEDITEIYSYTGQRVQPWRRGWDSAKP 248
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BLAST of jgi.p|Trimin1|352271 vs. uniprot
Match: A0A835ZEP0_9STRA (F-box domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEP0_9STRA)

HSP 1 Score: 159 bits (401), Expect = 1.680e-42
Identity = 118/318 (37.11%), Postives = 144/318 (45.28%), Query Frame = 1 
Query:    1 MWELDPFAVLGPAGVIQ-----------------------------KGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITA---------------------DKCGN--APGNRGLPP----------------------AGDTVLAANA----------------------------MGTALTAFSSGIVAEDCVVMRSGV--AAVVR----DEGPS-SSKGFLSMRGCTLEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISEC-GYTGQRVQPWRRGWDSAKP 624
            MWELDPFAV+GPAGVIQ                             K  +F+  T+LR C  H+   D + L+N++LYDTKPS+ V+S+  L   +  C  G CI + A                     ++C N  AP NRG  P                      AG   L   +                             G+AL A S GIVAE C +   GV   AVVR    ++ P+    G LSMRGC++ DN WGAF GKD PADV RAVLAANTF  N  +DI+E   Y GQRVQPWRRGWD  KP
Sbjct:   60 MWELDPFAVMGPAGVIQAAAHLSGSWLQLARRLGNPTCRDAWRCPNKAFYFNKKTLLRACRQHR-QGDHEMLMNDFLYDTKPSFCVNSSKALLAALAACHDGACIRVAAPISVGETLYVRLCRLQGHPPVERCCNEGAPCNRGAKPTLHLKHGSLAPLCAIVEGLRIEAGSRWLNGESWGPGAFFPAVSAAIPNGGLLRRCDVVSYQGSALVANSGGIVAEHCTLSTDGVFLGAVVRNAEDEKRPAIGGAGTLSMRGCSVMDNQWGAFLGKDAPADVTRAVLAANTFGHNRHEDIAELYHYAGQRVQPWRRGWDDGKP 376
[Close]
BLAST of jgi.p|Trimin1|352271 vs. uniprot
Match: A0A835YVB6_9STRA (DM10 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YVB6_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 4.560e-13
Identity = 42/81 (51.85%), Postives = 49/81 (60.49%), Query Frame = 1 
Query:    1 MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYDTKPSYTVSSASDLQQQMDDCDFGDCILITAD 243
            MWELDPFA LGPA  IQ+                        LINE+LY+TKP+YTV SASDLQ+ + DC FGDCI +TAD
Sbjct:    1 MWELDPFATLGPAAAIQR------------------------LINEFLYNTKPTYTVHSASDLQRAILDCGFGDCIRLTAD 57
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|352271 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835ZMQ3_9STRA2.580e-151100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835YVL6_9STRA6.710e-6248.16Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A835ZEP0_9STRA1.680e-4237.11F-box domain-containing protein n=1 Tax=Tribonema ... [more]
A0A835YVB6_9STRA4.560e-1351.85DM10 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_114contigContig_114:13659..16907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|352271|estExt_Genemark1.C_Ctg_1140002
Hectar predicted targeting categoryother localisation
TranscriptId352593
TrackFilteredModels1
ProteinId352271
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352271gene_15041Tribonema minus UTEX_B_3156 geneContig_114 13659..16907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|352271Trimin1|352271|estExt_Genemark1.C_Ctg_1140002Tribonema minus UTEX_B_3156 polypeptideContig_114 13901..16907 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_15041_7exon_15041_7Tribonema minus UTEX_B_3156 exonContig_114 13659..13991 -
exon_15041_6exon_15041_6Tribonema minus UTEX_B_3156 exonContig_114 14549..14699 -
exon_15041_5exon_15041_5Tribonema minus UTEX_B_3156 exonContig_114 15298..15367 -
exon_15041_4exon_15041_4Tribonema minus UTEX_B_3156 exonContig_114 15747..15774 -
exon_15041_3exon_15041_3Tribonema minus UTEX_B_3156 exonContig_114 15827..15937 -
exon_15041_2exon_15041_2Tribonema minus UTEX_B_3156 exonContig_114 16369..16493 -
exon_15041_1exon_15041_1Tribonema minus UTEX_B_3156 exonContig_114 16857..16907 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_15041UTR3_15041Tribonema minus UTEX_B_3156 three_prime_UTRContig_114 13659..13900 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_15041CDS_15041Tribonema minus UTEX_B_3156 CDSContig_114 16857..16907 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_15041 ID=mRNA_15041|Name=jgi.p|Trimin1|352271|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=869bp|location=Sequence derived from alignment at Contig_114:13659..16907- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTGGGAGCTGGATCCATTTGCTGTCCTGGGCCCCGCAGGAGTCATCCA
GAAGGGACAGTTCTTCAGTGCAGCAACAATGCTGCGGACTTGCAGCGATC
ACAAGCCCAACGCAGATGTTCAACCGCTGATCAATGAATACCTCTATGAC
ACCAAGCCCAGTTACACCGTCAGCAGCGCCTCCGACCTGCAGCAGCAGAT
GGATGACTGCGACTTTGGCGACTGCATCCTTATCACCGCCGACAAATGTG
GAAATGCGCCTGGGAATCGCGGGCTGCCGCCTGCGGGGGACACGGTGCTG
GCGGCCAATGCCATGGGCACGGCGCTAACGGCATTCAGCAGTGGGATCGT
CGCAGAGGATTGCGTGGTGATGCGCAGCGGCGTTGCCGCTGTGGTTCGCG
ATGAAGGCCCTTCATCGAGCAAGGGATTTCTGAGCATGCGCGGGTGCACA
TTGGAAGACAACGCGTGGGGCGCGTTCTTCGGGAAGGACACCCCCGCTGA
TGTGCAGCGCGCCGTGCTGGCAGCCAACACATTCAGGCGCAACTGTGCTA
AGGACATCTCAGAATGCGGTTACACGGGGCAGCGTGTGCAGCCGTGGCGC
AGGGGGTGGGACAGCGCCAAGCCCTAGTCTCCGCCAAGCGCCACATGTAG
GGCAGGTTTCCATGCATGCAGACACCAGCTGGCCGGGGGTTGACGGGAGG
CAAGCAGCTATAGGTTCACAACTACTGAAGACCGTCAAGCCGCAGTGCTG
AGTGAAGTCCGCGATTTATAGGCATGTGCGCACAGCGGCTGCGGCTGCAC
TTTACAAGCGGAGCGACGCAAGCAGCCAGCCATCGGCAGGTGGCGGGCGG
CCACTGAAGTCAAAATTGA
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protein sequence of jgi.p|Trimin1|352271

>Trimin1|352271|estExt_Genemark1.C_Ctg_1140002 ID=Trimin1|352271|estExt_Genemark1.C_Ctg_1140002|Name=jgi.p|Trimin1|352271|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=209bp
MWELDPFAVLGPAGVIQKGQFFSAATMLRTCSDHKPNADVQPLINEYLYD
TKPSYTVSSASDLQQQMDDCDFGDCILITADKCGNAPGNRGLPPAGDTVL
AANAMGTALTAFSSGIVAEDCVVMRSGVAAVVRDEGPSSSKGFLSMRGCT
LEDNAWGAFFGKDTPADVQRAVLAANTFRRNCAKDISECGYTGQRVQPWR
RGWDSAKP*
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mRNA from alignment at Contig_114:13659..16907-

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_15041 ID=mRNA_15041|Name=jgi.p|Trimin1|352271|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=3249bp|location=Sequence derived from alignment at Contig_114:13659..16907- (Tribonema minus UTEX_B_3156 )
ATGTGGGAGCTGGATCCATTTGCTGTCCTGGGCCCCGCAGGAGTCATCCA
GGTGCACGTGTTGGTCAAAGGAACTGTTACACAGCATTTACGTCGCAGGC
AACTGCTGTGCTGTGCTGGCTTGCGAGTCGTGAAGCTGGTGCAGCCGAAA
GTCTTGCTGACAGCAAGTGCATTAAAAAAGGCAGCCGCATAAGAAAATCA
TGCTGTTTTCAAGCCCGGAGTTCAAAAAAACTGAAATGCCGACATGTCTG
TGTTGCCTTCTGCTAATCGAGTCCAGATTTCACCAATGACCATGTTTGCT
GCTGCTGCTGCTGGTGCTCGTTCTAAGGCGGCTGGCCGGCTGCCTGGCGG
ATGGCTGGAGCTGGCATGTCGCCTGGGCAACCCCCGCTGCCAGTTCTCTC
AACGCTGCTCGCAGAAGGGACAGTTCTTCAGTGCAGCAACAATGCTGCGG
ACTTGCAGCGATCACAAGCCCAACGCAGATGTTCAACCGCTGATCAATGA
ATACCTCTATGACACCAAGCCCAGTTACACCGTCAGCAGGTGGGTCCCGA
GCGCACTGCACGGTAGTGACATGAAGAACCATGCATGTTTGATCACTGCC
GTCAGTCGCAGCTGGTGACAAAACGCTTCAGAGTACTCCATAAATCTGCC
TCTGGCAGAAGCATTGGCTGGCAGGATGATGGCCTGCTGCACCTTCAAAT
TCACCTGAAGAGAGCTGACGTGCTTACATTGACTCTTGGGTGCCGCAGTC
TCTGAAACTCGTCAGCAGTAGAATGATCACACAGTCGTCGAGCATGGGAT
CACTGGTGCTGACAAGCGCAGGCTATAGGCAGCCTCTGAACCTGCCGTGG
CCAGAGCGTGTTGTATGAATCATACAGTGTGCCCTTGTGCAGTGCTCATC
AAAAGCTCCGTGCCTCCATGATTGGTCTTTTCTTAATGCACATGCGCGTG
CGTTGTCCCTGTGTCCGCAGCGCCTCCGACCTGCAGCAGCAGATGGATGA
CTGCGACTTTGGCGACTGCATCCTTATCACCGCCGACAAATGTGGAAATG
CGCCTGGGAATCGCGGGCTGCCGCCTGCGGGGTGCGCCCGTCGGCGCCAG
CAATGGGCGTAGGCCACGCATCACCATGAGCAGGGACACGGTGCTGGCGG
CCAATGCCATGGTGGAGGGCTGGATATCATAGCGGGGGAAGATGGCTGGT
ACAATCCAAGTCGAGTAGTCCCGGCGGTGGAGGCGAACGGCTCGTGTGGA
GCACTGCTGCGGCGCTGCTGCATCACCTCCTTCTTTGTGAGACCTGATCG
CTTTTGCCGACCACTGCATCATTGTACAAAAGCGAATCTAGAGTGAACGG
CACCTTGCAAGAGGAGCCGTAAGCTTGGTAGCCCGGGTGCTCATGCATGC
AGCAGCAGCCTCCGTCATGCGCACCAAGTATACATGCTGCCAGTACCACA
TCATTCGCTGTACCACCTGCTGTACTGATTGCAACCTGTGCAGAGCACTG
ATGAAGCCATTTTGTTCGTGTTCTGCCGCGCAATGTACAGGGCACGGCGC
TAACGGCATTCAGCAGTGGGATCGTCGCAGAGGATTGCGTGGTGATGCGC
AGCGGCGTTGGTGAGCTTTGTCACGTGTGCATGCCCCCTCTGGAGCATGA
TTTGCAAGTGCACGCAATGCACAGGCAGCACCTCTGTGACATGTGACATT
GCGACGCTGATGTGCGCATTTCCGCATGCATTACGGTGACAGCTCATCAA
GCGACCGCTGTGAGCCCCTCACCCAATTCAAAACTTCATGAGCACTTTGA
TTTACAAAACTGTGCGTCCTCGTGCGCGTGCATGTAATATGTTGTCAAGT
GTCACACCTGGCACATGGCTGATTGCTTCATCATACAAGAAAGTTGTTTG
GTCCCATTGCAGTCATCGTTCTTTCCTTCATCTCCTGCGCCTCTGGGGCT
GGTGTCAGGGTAGAATGCCGACACAATGCAAGCTTTGCCTGTTGCAGCCC
TTACCGGCTCTTGCAGTTCGTCATGAAACTGTTCACGCAGCCTTATCACA
ATGGAAACATCAAGCTTGGTGCTTTCTAGCCCCGCCTCCCCCCTCCCCGC
AGCCTGAGGCAAACCCCCCTGTTTCCGTGCCATTCGCTGGATGGCACGCT
AAGTCTTACCCCCCTGCAGCACATGGCTCATGTGGCGCCTGTGCTTGTGT
ATACGCAGCCGCTGTGGTTCGCGATGAAGGCCCTTCATCGAGCAAGGGAT
TTCTGAGCATGCGCGGGTGCACATTGGAAGACAACGCGTGGGGCGCGTTC
TTCGGGAAGGACACCCCCGCTGATGTGCAGCGCGCCGTGCTGGCAGCCAA
CACATTCAGGTAAGTCTGCGTAGCTCTGTCCAATTACTTGAAAGAAGTTC
ACCATGAAGGCAGAGCTTCGGGCGTTCCTGAAGCTACAGCAGTAACAGCA
GCAATCCATTCGCAGAGGTCATACATCCAGAGGAACTTTGTTGAACAAGT
GACATTACATCTGCTGCTCAAGCTTAGTCTTTGTGGTGGCCTGATGCAAC
CAGTAGCTCACATGTTGCTGCGCATTGAGCAACAGTGGTTTGACCGTGCG
GTCATGGTATTGGTGCAGCTGCTCAGCCCGGTCAAATTGTAATCATGCAT
TTATATTCAGCTTGTCGGCTGAGCATCTTGAAATGTCAGGTGAAATGCAG
ACGACCCTTAGCCTGAGGCTAGTCTAACGTGCTTGTTGGGATTCCTAGAC
AAAGAGCGCCACTTTTTTCATTTTGTGGTTGAGTAGTTGCAGCCAACAGC
TGCATGCATTGAGCTTAAATGCCCTGAGTATCTGGTTTTTTGGACCGAGT
ACGTCAAGCAATGAAGCATCACTTCAAGGCTCGCTCAAGCACGCCGATTG
CACTTTGTGCCGGCAGGCGCAACTGTGCTAAGGACATCTCAGAATGCGGT
TACACGGGGCAGCGTGTGCAGCCGTGGCGCAGGGGGTGGGACAGCGCCAA
GCCCTAGTCTCCGCCAAGCGCCACATGTAGGGCAGGTTTCCATGCATGCA
GACACCAGCTGGCCGGGGGTTGACGGGAGGCAAGCAGCTATAGGTTCACA
ACTACTGAAGACCGTCAAGCCGCAGTGCTGAGTGAAGTCCGCGATTTATA
GGCATGTGCGCACAGCGGCTGCGGCTGCACTTTACAAGCGGAGCGACGCA
AGCAGCCAGCCATCGGCAGGTGGCGGGCGGCCACTGAAGTCAAAATTGA
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Coding sequence (CDS) from alignment at Contig_114:13659..16907-

>mRNA_15041 ID=mRNA_15041|Name=jgi.p|Trimin1|352271|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=627bp|location=Sequence derived from alignment at Contig_114:13659..16907- (Tribonema minus UTEX_B_3156 )
ATGTGGGAGCTGGATCCATTTGCTGTCCTGGGCCCCGCAGGAGTCATCCA
GAAGGGACAGTTCTTCAGTGCAGCAACAATGCTGCGGACTTGCAGCGATC
ACAAGCCCAACGCAGATGTTCAACCGCTGATCAATGAATACCTCTATGAC
ACCAAGCCCAGTTACACCGTCAGCAGCGCCTCCGACCTGCAGCAGCAGAT
GGATGACTGCGACTTTGGCGACTGCATCCTTATCACCGCCGACAAATGTG
GAAATGCGCCTGGGAATCGCGGGCTGCCGCCTGCGGGGGACACGGTGCTG
GCGGCCAATGCCATGGGCACGGCGCTAACGGCATTCAGCAGTGGGATCGT
CGCAGAGGATTGCGTGGTGATGCGCAGCGGCGTTGCCGCTGTGGTTCGCG
ATGAAGGCCCTTCATCGAGCAAGGGATTTCTGAGCATGCGCGGGTGCACA
TTGGAAGACAACGCGTGGGGCGCGTTCTTCGGGAAGGACACCCCCGCTGA
TGTGCAGCGCGCCGTGCTGGCAGCCAACACATTCAGGCGCAACTGTGCTA
AGGACATCTCAGAATGCGGTTACACGGGGCAGCGTGTGCAGCCGTGGCGC
AGGGGGTGGGACAGCGCCAAGCCCTAG
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