mRNA_12496 (mRNA) Tribonema minus UTEX_B_3156
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Overview
Homology
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A835YTI4_9STRA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI4_9STRA) HSP 1 Score: 265 bits (678), Expect = 5.460e-90 Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAVGGNS 393
ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAVGGNS
Sbjct: 1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAVGGNS 131
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A504X8G0_LEIDO (ATP-dependent DNA helicase n=7 Tax=Leishmania donovani species complex TaxID=38574 RepID=A0A504X8G0_LEIDO) HSP 1 Score: 60.1 bits (144), Expect = 6.670e-8 Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDG 174
ITGG GTGK+H+L T++ LP V ATTG AA N+ G T HS G+ RN+ G
Sbjct: 398 ITGGAGTGKSHLLRTIIRALPSSCTFVTATTGIAALNLSGSTLHSFVGCGIPSRNSKG 455
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: Q4QII5_LEIMA (ATP-dependent DNA helicase n=2 Tax=Leishmania major TaxID=5664 RepID=Q4QII5_LEIMA) HSP 1 Score: 59.7 bits (143), Expect = 9.020e-8 Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDG 174
ITGG GTGK+H+L T++ LP + V ATTG AA N+ G T HS G+ RN+ G
Sbjct: 275 ITGGAGTGKSHLLRTIIRALPASSTFVTATTGIAALNLSGSTLHSFVGCGIPDRNSKG 332
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: E9ALB9_LEIMU (ATP-dependent DNA helicase n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) TaxID=929439 RepID=E9ALB9_LEIMU) HSP 1 Score: 58.2 bits (139), Expect = 3.110e-7 Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDG 174
ITGG GTGK+H+L T+V LP V ATTG AA N+ G T HS G+ R++ G
Sbjct: 275 ITGGAGTGKSHLLRTIVRALPASCTFVTATTGIAALNLSGSTLHSFVGCGIPSRSSKG 332
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A836I210_9TRYP (ATP-dependent DNA helicase n=4 Tax=Mundinia TaxID=2249475 RepID=A0A836I210_9TRYP) HSP 1 Score: 55.8 bits (133), Expect = 2.000e-6 Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGR 162
ITGG GTGK+H+L T++ LP + V ATTG AA N+ G T HS G+ R
Sbjct: 388 ITGGAGTGKSHLLRTIIRALPASSTFVTATTGIAALNLGGSTLHSFVGCGIPNR 441
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A812LYU9_9DINO (ATP-dependent DNA helicase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812LYU9_9DINO) HSP 1 Score: 55.8 bits (133), Expect = 2.050e-6 Identity = 44/131 (33.59%), Postives = 59/131 (45.04%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNT----MVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAV 381
+ GGPGTGKTH+LN M LP AV CA AA I G T H+ F +G+ GR L ++ + ++ +DE M S + R A+Q R G + + D QQLP V
Sbjct: 1917 LLGGPGTGKTHMLNLNAQLMERFLPGAAVS-CAFMNSAARLIKGTTLHAEFGMGLDGRQQTSTTA---LRSLTQRWQHKRILRIDEISMVSAELLARTESTARTAKQ-KLFRPWGDLLVDLSGDIQQLPPV 2042
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A1Q9D860_SYMMI (ATP-dependent DNA helicase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D860_SYMMI) HSP 1 Score: 55.8 bits (133), Expect = 2.080e-6 Identity = 44/131 (33.59%), Postives = 59/131 (45.04%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNT----MVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAV 381
+ GGPGTGKTH+LN M LP AV CA AA I G T H+ F +G+ GR L ++ + ++ +DE M S + R A+Q R G + + D QQLP V
Sbjct: 4203 LLGGPGTGKTHMLNLNAQLMERFLPGAAVS-CAFMNSAARLIKGTTLHAEFGMGLDGRQQTSTTA---LRSLTQRWQHKRILRIDEISMVSAELLARTESTARTAKQ-KLFRPWGDLLVDLSGDIQQLPPV 4328
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A0M9FR93_9TRYP (ATP-dependent DNA helicase n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9FR93_9TRYP) HSP 1 Score: 54.7 bits (130), Expect = 4.990e-6 Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAEST 219
ITGG GTGK+H+L T++ +P + V ATTG AA N++G T HS GV D R + +A+M T
Sbjct: 204 ITGGAGTGKSHLLRTIIRGMPYSSTFVTATTGIAALNLNGTTLHSFVGCGVP----DKRASRSKIASMVMSKT 272
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A1E1IPL5_LEIGU (ATP-dependent DNA helicase n=4 Tax=Viannia TaxID=37616 RepID=A0A1E1IPL5_LEIGU) HSP 1 Score: 54.3 bits (129), Expect = 6.890e-6 Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGR 162
ITGG GTGK+H+L T++ LP + + ATTG A+ N+ G T HS G+ R
Sbjct: 384 ITGGAGTGKSHLLRTIIRALPASSTFITATTGIASLNLSGSTLHSFAGCGIPNR 437
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A836LK04_9TRYP (ATP-dependent DNA helicase n=1 Tax=Porcisia hertigi TaxID=2761500 RepID=A0A836LK04_9TRYP) HSP 1 Score: 54.3 bits (129), Expect = 6.890e-6 Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1
Query: 1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGV 153
ITGG GTGK+H+L T++ LP V ATTG AA N+ G T HS G+
Sbjct: 408 ITGGAGTGKSHLLRTIIRALPASPTFVTATTGIAALNLSGTTLHSFVGCGI 458 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_12496 ID=mRNA_12496|Name=jgi.p|Trimin1|129306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_77:615288..615680+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATCACGGGTGGGCCTGGCACCGGAAAAACGCATGTTTTGAACACGATGGTback to top protein sequence of jgi.p|Trimin1|129306 >Trimin1|129306|gw1.77.5.1 ID=Trimin1|129306|gw1.77.5.1|Name=jgi.p|Trimin1|129306|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGback to top mRNA from alignment at Contig_77:615288..615680+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_12496 ID=mRNA_12496|Name=jgi.p|Trimin1|129306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_77:615288..615680+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_77:615288..615680+ >mRNA_12496 ID=mRNA_12496|Name=jgi.p|Trimin1|129306|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_77:615288..615680+ (Tribonema minus UTEX_B_3156 )back to top |