mRNA_12496 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|129306
Unique NamemRNA_12496
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A835YTI4_9STRA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTI4_9STRA)

HSP 1 Score: 265 bits (678), Expect = 5.460e-90
Identity = 131/131 (100.00%), Postives = 131/131 (100.00%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAVGGNS 393
            ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAVGGNS
Sbjct:    1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAVGGNS 131          
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A504X8G0_LEIDO (ATP-dependent DNA helicase n=7 Tax=Leishmania donovani species complex TaxID=38574 RepID=A0A504X8G0_LEIDO)

HSP 1 Score: 60.1 bits (144), Expect = 6.670e-8
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDG 174
            ITGG GTGK+H+L T++  LP     V ATTG AA N+ G T HS    G+  RN+ G
Sbjct:  398 ITGGAGTGKSHLLRTIIRALPSSCTFVTATTGIAALNLSGSTLHSFVGCGIPSRNSKG 455          
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: Q4QII5_LEIMA (ATP-dependent DNA helicase n=2 Tax=Leishmania major TaxID=5664 RepID=Q4QII5_LEIMA)

HSP 1 Score: 59.7 bits (143), Expect = 9.020e-8
Identity = 29/58 (50.00%), Postives = 37/58 (63.79%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDG 174
            ITGG GTGK+H+L T++  LP  +  V ATTG AA N+ G T HS    G+  RN+ G
Sbjct:  275 ITGGAGTGKSHLLRTIIRALPASSTFVTATTGIAALNLSGSTLHSFVGCGIPDRNSKG 332          
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: E9ALB9_LEIMU (ATP-dependent DNA helicase n=1 Tax=Leishmania mexicana (strain MHOM/GT/2001/U1103) TaxID=929439 RepID=E9ALB9_LEIMU)

HSP 1 Score: 58.2 bits (139), Expect = 3.110e-7
Identity = 29/58 (50.00%), Postives = 36/58 (62.07%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDG 174
            ITGG GTGK+H+L T+V  LP     V ATTG AA N+ G T HS    G+  R++ G
Sbjct:  275 ITGGAGTGKSHLLRTIVRALPASCTFVTATTGIAALNLSGSTLHSFVGCGIPSRSSKG 332          
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A836I210_9TRYP (ATP-dependent DNA helicase n=4 Tax=Mundinia TaxID=2249475 RepID=A0A836I210_9TRYP)

HSP 1 Score: 55.8 bits (133), Expect = 2.000e-6
Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGR 162
            ITGG GTGK+H+L T++  LP  +  V ATTG AA N+ G T HS    G+  R
Sbjct:  388 ITGGAGTGKSHLLRTIIRALPASSTFVTATTGIAALNLGGSTLHSFVGCGIPNR 441          
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A812LYU9_9DINO (ATP-dependent DNA helicase n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812LYU9_9DINO)

HSP 1 Score: 55.8 bits (133), Expect = 2.050e-6
Identity = 44/131 (33.59%), Postives = 59/131 (45.04%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNT----MVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAV 381
            + GGPGTGKTH+LN     M   LP  AV  CA    AA  I G T H+ F +G+ GR          L ++     +  ++ +DE  M S +   R       A+Q    R  G + +    D QQLP V
Sbjct: 1917 LLGGPGTGKTHMLNLNAQLMERFLPGAAVS-CAFMNSAARLIKGTTLHAEFGMGLDGRQQTSTTA---LRSLTQRWQHKRILRIDEISMVSAELLARTESTARTAKQ-KLFRPWGDLLVDLSGDIQQLPPV 2042          
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A1Q9D860_SYMMI (ATP-dependent DNA helicase n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A1Q9D860_SYMMI)

HSP 1 Score: 55.8 bits (133), Expect = 2.080e-6
Identity = 44/131 (33.59%), Postives = 59/131 (45.04%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNT----MVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQARQGDELRVRGPISISRHMDQQQLPAV 381
            + GGPGTGKTH+LN     M   LP  AV  CA    AA  I G T H+ F +G+ GR          L ++     +  ++ +DE  M S +   R       A+Q    R  G + +    D QQLP V
Sbjct: 4203 LLGGPGTGKTHMLNLNAQLMERFLPGAAVS-CAFMNSAARLIKGTTLHAEFGMGLDGRQQTSTTA---LRSLTQRWQHKRILRIDEISMVSAELLARTESTARTAKQ-KLFRPWGDLLVDLSGDIQQLPPV 4328          
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A0M9FR93_9TRYP (ATP-dependent DNA helicase n=1 Tax=Leptomonas pyrrhocoris TaxID=157538 RepID=A0A0M9FR93_9TRYP)

HSP 1 Score: 54.7 bits (130), Expect = 4.990e-6
Identity = 31/73 (42.47%), Postives = 42/73 (57.53%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGRNNDGRLTGRHLAAMQAEST 219
            ITGG GTGK+H+L T++  +P  +  V ATTG AA N++G T HS    GV     D R +   +A+M    T
Sbjct:  204 ITGGAGTGKSHLLRTIIRGMPYSSTFVTATTGIAALNLNGTTLHSFVGCGVP----DKRASRSKIASMVMSKT 272          
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A1E1IPL5_LEIGU (ATP-dependent DNA helicase n=4 Tax=Viannia TaxID=37616 RepID=A0A1E1IPL5_LEIGU)

HSP 1 Score: 54.3 bits (129), Expect = 6.890e-6
Identity = 25/54 (46.30%), Postives = 34/54 (62.96%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGVRGR 162
            ITGG GTGK+H+L T++  LP  +  + ATTG A+ N+ G T HS    G+  R
Sbjct:  384 ITGGAGTGKSHLLRTIIRALPASSTFITATTGIASLNLSGSTLHSFAGCGIPNR 437          
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Match: A0A836LK04_9TRYP (ATP-dependent DNA helicase n=1 Tax=Porcisia hertigi TaxID=2761500 RepID=A0A836LK04_9TRYP)

HSP 1 Score: 54.3 bits (129), Expect = 6.890e-6
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1
Query:    1 ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIGV 153
            ITGG GTGK+H+L T++  LP     V ATTG AA N+ G T HS    G+
Sbjct:  408 ITGGAGTGKSHLLRTIIRALPASPTFVTATTGIAALNLSGTTLHSFVGCGI 458          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|129306 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YTI4_9STRA5.460e-90100.00ATP-dependent DNA helicase (Fragment) n=1 Tax=Trib... [more]
A0A504X8G0_LEIDO6.670e-850.00ATP-dependent DNA helicase n=7 Tax=Leishmania dono... [more]
Q4QII5_LEIMA9.020e-850.00ATP-dependent DNA helicase n=2 Tax=Leishmania majo... [more]
E9ALB9_LEIMU3.110e-750.00ATP-dependent DNA helicase n=1 Tax=Leishmania mexi... [more]
A0A836I210_9TRYP2.000e-650.00ATP-dependent DNA helicase n=4 Tax=Mundinia TaxID=... [more]
A0A812LYU9_9DINO2.050e-633.59ATP-dependent DNA helicase n=2 Tax=Symbiodinium Ta... [more]
A0A1Q9D860_SYMMI2.080e-633.59ATP-dependent DNA helicase n=1 Tax=Symbiodinium mi... [more]
A0A0M9FR93_9TRYP4.990e-642.47ATP-dependent DNA helicase n=1 Tax=Leptomonas pyrr... [more]
A0A1E1IPL5_LEIGU6.890e-646.30ATP-dependent DNA helicase n=4 Tax=Viannia TaxID=3... [more]
A0A836LK04_9TRYP6.890e-650.98ATP-dependent DNA helicase n=1 Tax=Porcisia hertig... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_77contigContig_77:615288..615680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|129306|gw1.77.5.1
BRITEko00000,ko01000,ko03029,ko03032
KEGG koko:K15255
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
COG categoryL
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota,3A1N8@33154|Opisthokonta,3BR8V@33208|Metazoa
Evalue2.9e-09
Seed ortholog400682.PAC_15721405
Hectar predicted targeting categoryother localisation
TranscriptId129628
TrackFilteredModels1
ProteinId129306
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129306gene_12496Tribonema minus UTEX_B_3156 geneContig_77 615288..615680 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_12496_1exon_12496_1Tribonema minus UTEX_B_3156 exonContig_77 615288..615680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_12496CDS_12496Tribonema minus UTEX_B_3156 CDSContig_77 615288..615680 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|129306Trimin1|129306|gw1.77.5.1Tribonema minus UTEX_B_3156 polypeptideContig_77 615288..615680 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_12496 ID=mRNA_12496|Name=jgi.p|Trimin1|129306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_77:615288..615680+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATCACGGGTGGGCCTGGCACCGGAAAAACGCATGTTTTGAACACGATGGT
TGGGATGCTGCCAGAAGGTGCTGTGCGCGTATGTGCAACTACTGGTTGTG
CAGCAAACAATATAGATGGAGATACAGCGCACAGCATGTTTCATATAGGT
GTCAGAGGGCGAAACAATGACGGGCGTTTGACAGGGCGACACTTGGCAGC
AATGCAAGCTGAAAGCACAAACACATACCTAATTGCAATGGACGAGGCAG
GTATGGCATCCCTGGACTTCACTGGCCGTGCCTCCATTCATACTGAGCAA
GCAAGGCAAGGTGATGAGTTGAGGGTGCGTGGGCCCATCAGCATATCAAG
ACACATGGATCAGCAACAGCTACCAGCCGTCGGCGGCAACTCA
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protein sequence of jgi.p|Trimin1|129306

>Trimin1|129306|gw1.77.5.1 ID=Trimin1|129306|gw1.77.5.1|Name=jgi.p|Trimin1|129306|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=131bp
ITGGPGTGKTHVLNTMVGMLPEGAVRVCATTGCAANNIDGDTAHSMFHIG
VRGRNNDGRLTGRHLAAMQAESTNTYLIAMDEAGMASLDFTGRASIHTEQ
ARQGDELRVRGPISISRHMDQQQLPAVGGNS
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mRNA from alignment at Contig_77:615288..615680+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_12496 ID=mRNA_12496|Name=jgi.p|Trimin1|129306|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=393bp|location=Sequence derived from alignment at Contig_77:615288..615680+ (Tribonema minus UTEX_B_3156 )
ATCACGGGTGGGCCTGGCACCGGAAAAACGCATGTTTTGAACACGATGGT TGGGATGCTGCCAGAAGGTGCTGTGCGCGTATGTGCAACTACTGGTTGTG CAGCAAACAATATAGATGGAGATACAGCGCACAGCATGTTTCATATAGGT GTCAGAGGGCGAAACAATGACGGGCGTTTGACAGGGCGACACTTGGCAGC AATGCAAGCTGAAAGCACAAACACATACCTAATTGCAATGGACGAGGCAG GTATGGCATCCCTGGACTTCACTGGCCGTGCCTCCATTCATACTGAGCAA GCAAGGCAAGGTGATGAGTTGAGGGTGCGTGGGCCCATCAGCATATCAAG ACACATGGATCAGCAACAGCTACCAGCCGTCGGCGGCAACTCA
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Coding sequence (CDS) from alignment at Contig_77:615288..615680+

>mRNA_12496 ID=mRNA_12496|Name=jgi.p|Trimin1|129306|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=393bp|location=Sequence derived from alignment at Contig_77:615288..615680+ (Tribonema minus UTEX_B_3156 )
ATCACGGGTGGGCCTGGCACCGGAAAAACGCATGTTTTGAACACGATGGT
TGGGATGCTGCCAGAAGGTGCTGTGCGCGTATGTGCAACTACTGGTTGTG
CAGCAAACAATATAGATGGAGATACAGCGCACAGCATGTTTCATATAGGT
GTCAGAGGGCGAAACAATGACGGGCGTTTGACAGGGCGACACTTGGCAGC
AATGCAAGCTGAAAGCACAAACACATACCTAATTGCAATGGACGAGGCAG
GTATGGCATCCCTGGACTTCACTGGCCGTGCCTCCATTCATACTGAGCAA
GCAAGGCAAGGTGATGAGTTGAGGGTGCGTGGGCCCATCAGCATATCAAG
ACACATGGATCAGCAACAGCTACCAGCCGTCGGCGGCAACTCA
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