mRNA_11335 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350953
Unique NamemRNA_11335
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: A0A836C9I1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9I1_9STRA)

HSP 1 Score: 221 bits (562), Expect = 2.190e-71
Identity = 115/115 (100.00%), Postives = 115/115 (100.00%), Query Frame = 1 
Query:  100 MFALRAGARSARLARVPARGMAGGHGPAKEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAALAK 444
            MFALRAGARSARLARVPARGMAGGHGPAKEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAALAK
Sbjct:    1 MFALRAGARSARLARVPARGMAGGHGPAKEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAALAK 115
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: K3WMV8_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMV8_GLOUD)

HSP 1 Score: 74.7 bits (182), Expect = 6.530e-14
Identity = 48/102 (47.06%), Postives = 64/102 (62.75%), Query Frame = 1 
Query:  145 VPARGMAGGHGPA-KEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAP---AAAPIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAAL 438
            + AR M+GGHG      TG E  VR VL +D  +VL  +G Y++++LLFK+KPSK AP   AAAP AA  ST+D  IPS+    F  W + PGN ++W  +L
Sbjct:   18 IQARLMSGGHGHGGPPPTGFEAKVRAVLPQDYQIVLATLGIYSSIILLFKLKPSKKAPEAIAAAPAAA--STSDA-IPSLFDDEFDEWSKLPGNVERWEKSL 116
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: A0A0P1B0D1_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1B0D1_PLAHL)

HSP 1 Score: 73.6 bits (179), Expect = 1.680e-13
Identity = 42/99 (42.42%), Postives = 54/99 (54.55%), Query Frame = 1 
Query:  142 RVPARGMAGGHGPAKEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAAL 438
            R PA+    GHGPA     +E  VR  L KD H+VL  +G Y TL++LFK+KPSK       I +  S+    IPS+    F  W + PGN DKW  +L
Sbjct:   15 RTPAQCRLMGHGPAPVEGSLEAKVRHYLPKDYHIVLATLGAYTTLIMLFKLKPSKKKEEEIVIPSNLSSTSASIPSLFDDEFDEWSKLPGNLDKWEKSL 113
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: A0A7S2R1X0_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R1X0_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 3.650e-13
Identity = 52/121 (42.98%), Postives = 65/121 (53.72%), Query Frame = 1 
Query:   97 VMFALRAGARSARLARV--PARGMAGGHGPAKEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLL--FKMKPSKPAPAAAPIAAAPSTA-DGDIPSVESPTFSAWIEAPGNADKWFAALAK 444
            VM A++A AR + +  V    R   GGH PA E+TGI+KVVRG   +D  L   I+G Y  ++ L   K K S      AP+  AP  A  GDIPSVES  F  +IE   N  KW  +L K
Sbjct:    2 VMIAIQATARRSAVVAVRHQQRRQMGGHAPAPEWTGIDKVVRGYFPQDHQLAGAILGGYGVVIALGMLKSKLSSSDEEPAPVVVAPVAAITGDIPSVESAEFDTFIENESNLMKWVDSLEK 122
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: A0A8K1FKH1_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FKH1_PYTOL)

HSP 1 Score: 70.9 bits (172), Expect = 1.890e-12
Identity = 46/110 (41.82%), Postives = 63/110 (57.27%), Query Frame = 1 
Query:  115 AGARSARLARVPARGMAGGHGPA-KEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAA-APIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAAL 438
            A A   R   +  R M+GGHG      TG E  VR VL +D  +VL  +G Y++++LLFK+KPSK APA  AP A + S+A   +PS+    F  W + PGN  +W  +L
Sbjct:    9 AAAAKPRANNMQTRLMSGGHGHGGPPPTGFEAKVRAVLPQDYQIVLATLGIYSSIILLFKLKPSKAAPAVEAPAATSASSA---VPSLFDDEFDQWSKVPGNMQRWEESL 115
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: A0A3M6VF92_9STRA (Uncharacterized protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VF92_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 1.940e-12
Identity = 41/94 (43.62%), Postives = 55/94 (58.51%), Query Frame = 1 
Query:  172 HGPAKEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGD-----IPSVESPTFSAWIEAPGNADKWFAAL 438
            HGPA     +E  VR  L KD H+VL  +G YAT+++LFK+KPSK    A  I A PS+++ +     IPS+    F  W + PGN DKW  +L
Sbjct:   25 HGPAAPEGSLEAKVRHYLPKDYHIVLATLGAYATIIMLFKLKPSKKK--AEEIVATPSSSNSNSTLTSIPSLFDDEFDEWSKLPGNMDKWEKSL 116
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: W2PCG6_PHYPN (Uncharacterized protein n=11 Tax=Phytophthora TaxID=4783 RepID=W2PCG6_PHYPN)

HSP 1 Score: 66.2 bits (160), Expect = 1.030e-10
Identity = 38/99 (38.38%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:  142 RVPARGMAGGHGPAKEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAAL 438
            R PA+     HGPA     +E  VR  L +D H+VL  +G Y TL++LFK+KPSK                  IPS+    F  W + PGN DKW  +L
Sbjct:   15 RTPAQSRLMSHGPAPAEGSLEAKVRHYLPEDYHIVLATLGAYTTLIMLFKLKPSKXXXXXXXXXXXXXXXSTSIPSLFDDEFDEWSKLPGNLDKWEKSL 113
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: H3HCQ7_PHYRM (PDEase domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3HCQ7_PHYRM)

HSP 1 Score: 68.9 bits (167), Expect = 3.400e-10
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 1 
Query:  142 RVPARGMAGGHGPAKEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAAL 438
            R PA+     HGPA     +E  VR  L +D H+VL  +G Y TL++LFK+KPSK       I A+ ++    +PS+    F  W + PGN  KW  +L
Sbjct:  548 RTPAQSRLMSHGPAPPEGSLEAKVRHYLPEDYHIVLATLGAYTTLIMLFKLKPSKKKEEEIVIPASSNSTSTSVPSLFDDEFDEWSKLPGNLAKWEKSL 646
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: A0A2D4BL17_PYTIN (PDEase domain-containing protein (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BL17_PYTIN)

HSP 1 Score: 66.2 bits (160), Expect = 2.870e-9
Identity = 45/117 (38.46%), Postives = 59/117 (50.43%), Query Frame = 1 
Query:  142 RVPARGMAGGHGPAKEYTGIEK------------------VVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAAL 438
            R+  R MAG HGP    TG E                       VL +D  +VL  +GFY+T++LLFK+KPSK A   AP AA+   A   IPS+    F+ W + PGN D+W  +L
Sbjct:  538 RMQTRTMAGHHGPPP--TGFEAKXXXXXXXXXXXXXXXXXXXXAVLPQDYQIVLATLGFYSTIILLFKLKPSKKA-VEAPAAASAPAASSSIPSLFDDEFAEWSKLPGNMDRWEKSL 651
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BLAST of jgi.p|Trimin1|350953 vs. uniprot
Match: G5A273_PHYSP (PDEase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G5A273_PHYSP)

HSP 1 Score: 65.9 bits (159), Expect = 3.950e-9
Identity = 38/99 (38.38%), Postives = 49/99 (49.49%), Query Frame = 1 
Query:  142 RVPARGMAGGHGPAKEYTGIEKVVRGVLKKDEHLVLGIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGDIPSVESPTFSAWIEAPGNADKWFAAL 438
            R PA+     HGPA     +E  VR  L +D H+VL  +G Y TL++LFK+KPSK                  IPS+    F  W + PGN DKW  +L
Sbjct:  603 RTPAQKRLMSHGPAPPEGSLEAKVRHYLPEDYHIVLATLGAYTTLIMLFKLKPSKXXXXXXXXXXXXXXTSTSIPSLFDEEFDEWSKLPGNLDKWEKSL 701
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350953 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A836C9I1_9STRA2.190e-71100.00Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
K3WMV8_GLOUD6.530e-1447.06Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A0P1B0D1_PLAHL1.680e-1342.42Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
A0A7S2R1X0_9STRA3.650e-1342.98Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A8K1FKH1_PYTOL1.890e-1241.82Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A3M6VF92_9STRA1.940e-1243.62Uncharacterized protein n=1 Tax=Peronospora effusa... [more]
W2PCG6_PHYPN1.030e-1038.38Uncharacterized protein n=11 Tax=Phytophthora TaxI... [more]
H3HCQ7_PHYRM3.400e-1038.38PDEase domain-containing protein n=1 Tax=Phytophth... [more]
A0A2D4BL17_PYTIN2.870e-938.46PDEase domain-containing protein (Fragment) n=1 Ta... [more]
G5A273_PHYSP3.950e-938.38PDEase domain-containing protein n=1 Tax=Phytophth... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_76contigContig_76:145561..147365 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350953|estExt_Genemark1.C_Ctg_760020
Max annot lvl121069|Pythiales
EggNOG OGs2CYCG@1|root,2S3JM@2759|Eukaryota,1MIC8@121069|Pythiales
Evalue7.21e-16
Seed ortholog65071.PYU1_T006300
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-27_003740.1
TranscriptId351275
TrackFilteredModels1
ProteinId350953
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350953gene_11335Tribonema minus UTEX_B_3156 geneContig_76 145561..147365 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_11335_2exon_11335_2Tribonema minus UTEX_B_3156 exonContig_76 145561..145916 -
exon_11335_1exon_11335_1Tribonema minus UTEX_B_3156 exonContig_76 147126..147365 -


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_11335UTR3_11335Tribonema minus UTEX_B_3156 three_prime_UTRContig_76 145561..145709 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_11335CDS_11335Tribonema minus UTEX_B_3156 CDSContig_76 147126..147266 -


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_11335UTR5_11335Tribonema minus UTEX_B_3156 five_prime_UTRContig_76 147267..147365 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350953Trimin1|350953|estExt_Genemark1.C_Ctg_760020Tribonema minus UTEX_B_3156 polypeptideContig_76 145710..147266 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_11335 ID=mRNA_11335|Name=jgi.p|Trimin1|350953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=596bp|location=Sequence derived from alignment at Contig_76:145561..147365- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CAGAGCCTAAACTCTTGCAGTGGGTGCTGGCTTGTAGCTTTTATCGCAGT
CAGGCAGAAGCAGCAAAGGCGAGCAGCAGGCGGCAGCACACAGGCAGTCA
TGTTTGCGCTCAGGGCAGGGGCTCGTTCAGCGCGCTTGGCGAGGGTGCCA
GCTAGAGGCATGGCGGGCGGCCATGGCCCTGCCAAGGAGTACACGGGGAT
TGAGAAGGTGGTGCGGGGCGTGCTGAAGAAGGACGAACACCTGGTTCTCG
GCATCGTGGGCTTCTACGCGACGCTCGTCCTGCTCTTCAAAATGAAGCCC
TCCAAGCCCGCGCCGGCCGCGGCGCCCATCGCTGCCGCGCCGAGCACTGC
CGACGGCGACATCCCCTCCGTCGAGTCCCCCACTTTCTCCGCGTGGATCG
AGGCACCCGGGAACGCCGACAAGTGGTTTGCCGCGTTGGCAAAGTAGGGG
CTGGGGCATTGGAAGTGGGCCAGCAGCGGCAGCGGCGGCGGTGGCAGCGG
CGGTAGGGTGGCGGATAGATATGGGAGGGGGCAGGGGGTGAGTGGGGAGG
GGGGAATAGGAATGGAAATGCAATGTATGACAAATTATTGACCAGT
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protein sequence of jgi.p|Trimin1|350953

>Trimin1|350953|estExt_Genemark1.C_Ctg_760020 ID=Trimin1|350953|estExt_Genemark1.C_Ctg_760020|Name=jgi.p|Trimin1|350953|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=116bp
MFALRAGARSARLARVPARGMAGGHGPAKEYTGIEKVVRGVLKKDEHLVL
GIVGFYATLVLLFKMKPSKPAPAAAPIAAAPSTADGDIPSVESPTFSAWI
EAPGNADKWFAALAK*
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mRNA from alignment at Contig_76:145561..147365-

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_11335 ID=mRNA_11335|Name=jgi.p|Trimin1|350953|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=1805bp|location=Sequence derived from alignment at Contig_76:145561..147365- (Tribonema minus UTEX_B_3156 )
CAGAGCCTAAACTCTTGCAGTGGGTGCTGGCTTGTAGCTTTTATCGCAGT
CAGGCAGAAGCAGCAAAGGCGAGCAGCAGGCGGCAGCACACAGGCAGTCA
TGTTTGCGCTCAGGGCAGGGGCTCGTTCAGCGCGCTTGGCGAGGGTGCCA
GCTAGAGGCATGGCGGGCGGCCATGGCCCTGCCAAGGAGTACACGGGGAT
TGAGAAGGTGGTGCGGGGCGTGCTGAAGAAGGACGAACACGTGAGTGTCA
CAAAAAACTGGTAGCCTCAAATGTGGTTTCGCGATGCATGTTTGCTGCTC
AACACCACGACAGACAAACGAGGTGGTACGTAGAACCTGGATCAGTAGGA
AGGTCTGCTGTGCTTGCAATCGTGTAATGCTGTAAGCGACGGATCTGACC
CTGTCGATAAACCAGTATGCCAGTCACTAGCCATCATTTTCAGAACAGAC
GAAAGGTGCCTGATGGAAGTAGGCATCATGCCAAGCAGCACGCCGCACGT
GCTGATTTTTGAGGCAACTGAGCCCATTGACATGATTTTATGCTGCTGAG
CTTCAGCCTTGTACTTCAGCCAGCATTAGATTCAACTTATGCTTCAGTCT
GTAAGCAACATGACATGCGACAGTTGTGAAGCAGCAGACTGGACAGGTGC
AACAGGCAAGAATCAAAGCTGCACTTCATGACGCTCTGCTATAGAATTCA
ACGTGATTATCACCTGTCGCTTATTTGTTTTGATGCTCACTCGCTTGAGC
ACTCTGCTCAACAATCCAATGGCAGTCATGTGTGGCAGCGCTATCCAAGC
ACAACCGCACAGCGCAGTGAAACCTTATTGGAAGTTTGCATTGCGTGCGT
AGCATCACGGCTTCTTCTGCGCGTGTGCCGTTGCGTGCACCGGAAAGGGA
CACGCAAAGTTTTCATCCTGCTCAGCCACATTCGCCACATGCTTGTAGAT
GAGCATGGCCCGCAGCATTGGGTTGCGCATGATTGCAGTCAAATCACCCT
GATGCAAACGCTTGGGACGGTGTGCAAAGGAAACTGCAGCCACTTCATCA
AGCACGCCACGTGTCTCATGAGACCCTTCTGGTTACGCAGTCTTTGCGGC
CGTGGAGCGACTGACAGGTCTTGAAGCGCAGCAGTCCGCTGTGCTCCGTG
CTCACTCATGTCGCCCATCTTCGACGCATCACTGTTGACGCCGAATAGAA
TGGTGCAAGCATCGCACGCGCGATGCCGCCAGCTCGCAGCGCCACCGGTC
CGCGCGGGCCTCGCCTATGCACATGCACCTTGACATTCTTGCAGTCCATG
CAGCCACGTATACCTGAGACTCAACATCTGATTGCCCATGATGCACGTCA
GAGCCTGGCATCCCTGAAGTACGTACCCCTGCGCCGTGACTGACCGCCGC
TGCTCTCGTCTGCCTCTGGTGACTCTCCTACTCCGGTGACGCTCGCCAGC
TGGTTCTCGGCATCGTGGGCTTCTACGCGACGCTCGTCCTGCTCTTCAAA
ATGAAGCCCTCCAAGCCCGCGCCGGCCGCGGCGCCCATCGCTGCCGCGCC
GAGCACTGCCGACGGCGACATCCCCTCCGTCGAGTCCCCCACTTTCTCCG
CGTGGATCGAGGCACCCGGGAACGCCGACAAGTGGTTTGCCGCGTTGGCA
AAGTAGGGGCTGGGGCATTGGAAGTGGGCCAGCAGCGGCAGCGGCGGCGG
TGGCAGCGGCGGTAGGGTGGCGGATAGATATGGGAGGGGGCAGGGGGTGA
GTGGGGAGGGGGGAATAGGAATGGAAATGCAATGTATGACAAATTATTGA
CCAGT
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Coding sequence (CDS) from alignment at Contig_76:145561..147365-

>mRNA_11335 ID=mRNA_11335|Name=jgi.p|Trimin1|350953|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=348bp|location=Sequence derived from alignment at Contig_76:145561..147365- (Tribonema minus UTEX_B_3156 )
ATGTTTGCGCTCAGGGCAGGGGCTCGTTCAGCGCGCTTGGCGAGGGTGCC
AGCTAGAGGCATGGCGGGCGGCCATGGCCCTGCCAAGGAGTACACGGGGA
TTGAGAAGGTGGTGCGGGGCGTGCTGAAGAAGGACGAACACCTGGTTCTC
GGCATCGTGGGCTTCTACGCGACGCTCGTCCTGCTCTTCAAAATGAAGCC
CTCCAAGCCCGCGCCGGCCGCGGCGCCCATCGCTGCCGCGCCGAGCACTG
CCGACGGCGACATCCCCTCCGTCGAGTCCCCCACTTTCTCCGCGTGGATC
GAGGCACCCGGGAACGCCGACAAGTGGTTTGCCGCGTTGGCAAAGTAG
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