mRNA_7629 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|350907
Unique NamemRNA_7629
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
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BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A835YKD0_9STRA (Putative 40S ribosomal protein RPS29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD0_9STRA)

HSP 1 Score: 126 bits (316), Expect = 3.550e-36
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:   34 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 201
            MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS
Sbjct:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
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BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: D7FJK2_ECTSI (Similar to ribosomal protein S29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK2_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.200e-23
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   34 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 201
            MG+KAL NSHPK++GKGG  CRVC+NQHG+I+KYG+ MCRQCFR YA +IGF K S
Sbjct:   43 MGSKALVNSHPKSFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVYATEIGFTKFS 98
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BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A061RP44_9CHLO (Small subunit ribosomal protein S29e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RP44_9CHLO)

HSP 1 Score: 90.9 bits (224), Expect = 3.670e-22
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   34 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKL 198
            MG   + NSHPK YGKG   CRVC NQHG+I+KYG+N+CRQCFR YA DIGF K+
Sbjct:    1 MGHAEVWNSHPKGYGKGSRSCRVCGNQHGLIRKYGLNICRQCFREYAKDIGFQKM 55
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BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A7J7QR56_9CHLO (40S ribosomal protein S29 (Fragment) n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QR56_9CHLO)

HSP 1 Score: 89.7 bits (221), Expect = 9.990e-22
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:   34 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHK 195
            MG +A+ NSHPK YGKGG KCRVC+NQ GII+KY +N+CRQCFR YA DIGF K
Sbjct:    1 MGHEAVWNSHPKDYGKGGRKCRVCSNQGGIIRKYNLNICRQCFREYANDIGFIK 54
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BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A9UDQ9_9BILA (40S ribosomal protein S29 n=1 Tax=Flustra foliacea TaxID=478208 RepID=A9UDQ9_9BILA)

HSP 1 Score: 88.6 bits (218), Expect = 3.000e-21
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = 1 
Query:   34 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKL 198
            MG   +  SHP  YG G  KCRVC+NQHGII+KYG+NMCRQCFR YA DIGF K+
Sbjct:    1 MGHSNIWKSHPNKYGPGSRKCRVCSNQHGIIRKYGLNMCRQCFRQYAADIGFKKM 55
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BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: V9LIY4_CALMI (40S ribosomal protein S29 (Fragment) n=4 Tax=Callorhinchus milii TaxID=7868 RepID=V9LIY4_CALMI)

HSP 1 Score: 89.0 bits (219), Expect = 4.540e-21
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 1 
Query:   19 RRSRAMGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKL 198
            RR  AMG + L  SHP+ +G+G   CRVCAN+HG+I+KYG+NMCRQCFR YA DIGF KL
Sbjct:   25 RRRLAMGHQQLYWSHPRKFGQGSRSCRVCANRHGLIRKYGLNMCRQCFRQYAKDIGFVKL 84
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BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A674H9Z8_TAEGU (40S ribosomal protein S29 n=4 Tax=Passeriformes TaxID=9126 RepID=A0A674H9Z8_TAEGU)

HSP 1 Score: 89.7 bits (221), Expect = 4.880e-21
Identity = 41/71 (57.75%), Postives = 52/71 (73.24%), Query Frame = 1 
Query:   34 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS*EHSSARNGAGAAVP 246
            MG + L  SHP+ +G+G   CRVC+N+HG+I+KYG+NMCRQCFR YA DIGF K+S     A  G G+AVP
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKVS----PAAAGGGSAVP 67
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BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A8D2Q111_ZOSLA (40S ribosomal protein S29 n=1 Tax=Zosterops lateralis melanops TaxID=1220523 RepID=A0A8D2Q111_ZOSLA)

HSP 1 Score: 89.7 bits (221), Expect = 4.880e-21
Identity = 46/91 (50.55%), Postives = 59/91 (64.84%), Query Frame = 1 
Query:   34 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS*EHSSARNGAGAAVPEQ*RR--GVLPGGVVATNPR 300
            MG + L  SHP+ +G+G   CRVC+N+HG+I+KYG+NMCRQCFR YA DIGF K+S    +A  G+G  VP    R  G L  G+ A   R
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNRHGLIRKYGLNMCRQCFRQYAKDIGFIKVS--PVAAGRGSGVPVPAHXPRLSGSLAAGLSARRMR 89
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BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: R7UVH5_CAPTE (40S ribosomal protein S29 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UVH5_CAPTE)

HSP 1 Score: 87.0 bits (214), Expect = 1.220e-20
Identity = 37/55 (67.27%), Postives = 43/55 (78.18%), Query Frame = 1 
Query:   34 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKL 198
            MG   +  SHPK YG+G   CRVCAN+HG+I+KYG+NMCRQCFR YA DIGF KL
Sbjct:    1 MGHANIWCSHPKKYGQGSRSCRVCANRHGLIRKYGLNMCRQCFRQYADDIGFKKL 55
[Close]
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: B0Z9R4_9BILA (40S ribosomal protein S29 n=2 Tax=Lineidae TaxID=6222 RepID=B0Z9R4_9BILA)

HSP 1 Score: 87.0 bits (214), Expect = 1.220e-20
Identity = 36/55 (65.45%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:   34 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKL 198
            MG   + NSHPK +G+G   CRVC+N+HG+I+KYG+NMCRQCFR YA DIGF KL
Sbjct:    1 MGFANIWNSHPKKFGQGSRCCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFKKL 55
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKD0_9STRA3.550e-36100.00Putative 40S ribosomal protein RPS29 n=1 Tax=Tribo... [more]
D7FJK2_ECTSI1.200e-2371.43Similar to ribosomal protein S29 n=1 Tax=Ectocarpu... [more]
A0A061RP44_9CHLO3.670e-2267.27Small subunit ribosomal protein S29e n=1 Tax=Tetra... [more]
A0A7J7QR56_9CHLO9.990e-2272.2240S ribosomal protein S29 (Fragment) n=1 Tax=Scene... [more]
A9UDQ9_9BILA3.000e-2167.2740S ribosomal protein S29 n=1 Tax=Flustra foliacea... [more]
V9LIY4_CALMI4.540e-2165.0040S ribosomal protein S29 (Fragment) n=4 Tax=Callo... [more]
A0A674H9Z8_TAEGU4.880e-2157.7540S ribosomal protein S29 n=4 Tax=Passeriformes Ta... [more]
A0A8D2Q111_ZOSLA4.880e-2150.5540S ribosomal protein S29 n=1 Tax=Zosterops latera... [more]
R7UVH5_CAPTE1.220e-2067.2740S ribosomal protein S29 n=1 Tax=Capitella teleta... [more]
B0Z9R4_9BILA1.220e-2065.4540S ribosomal protein S29 n=2 Tax=Lineidae TaxID=6... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:309460..310424 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|350907|estExt_Genemark1.C_Ctg_750045
BRITEbr01610,ko00000,ko00001,ko00002,ko03011,ko04131
KEGG ModuleM00177
KEGG Pathwayko03010,map03010
KEGG koko:K02980,ko:K20308
GOsGO:0002181,GO:0003674,GO:0003735,GO:0005198,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005840,GO:0005844,GO:0006412,GO:0006518,GO:0006807,GO:0008150,GO:0008152,GO:0008270,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0015935,GO:0019538,GO:0022626,GO:0022627,GO:0032991,GO:0034641,GO:0034645,GO:0042788,GO:0043043,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044391,GO:0044422,GO:0044424,GO:0044444,GO:0044445,GO:0044446,GO:0044464,GO:0046872,GO:0046914,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1990904
Preferred namerps29
Descriptionribosomal protein
COG categoryJ
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0199@1|root,KOG3506@2759|Eukaryota
Evalue3.15e-26
Seed ortholog2880.D7FJK2
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionsimilar to 40S ribosomal protein S29
Ec32 orthologEc-04_006420.1
TranscriptId351229
TrackFilteredModels1
ProteinId350907
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350907gene_7629Tribonema minus UTEX_B_3156 geneContig_75 309460..310424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350907Trimin1|350907|estExt_Genemark1.C_Ctg_750045Tribonema minus UTEX_B_3156 polypeptideContig_75 309768..310302 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7629_1exon_7629_1Tribonema minus UTEX_B_3156 exonContig_75 309460..309488 +
exon_7629_2exon_7629_2Tribonema minus UTEX_B_3156 exonContig_75 309764..309929 +
exon_7629_3exon_7629_3Tribonema minus UTEX_B_3156 exonContig_75 310294..310424 +


The following five_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR5_7629UTR5_7629Tribonema minus UTEX_B_3156 five_prime_UTRContig_75 309460..309488 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7629CDS_7629Tribonema minus UTEX_B_3156 CDSContig_75 309768..309929 +


The following three_prime_UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
UTR3_7629UTR3_7629Tribonema minus UTEX_B_3156 three_prime_UTRContig_75 310303..310424 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7629 ID=mRNA_7629|Name=jgi.p|Trimin1|350907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=326bp|location=Sequence derived from alignment at Contig_75:309460..310424+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
CTGCTTTGGTGTGCTACTAGGAGGTCAAGAGCCATGGGAGCCAAGGCGCT
GCAGAACTCTCACCCCAAGGCGTACGGCAAGGGCGGCAACAAGTGCCGCG
TCTGCGCCAACCAGCACGGCATCATCAAGAAGTACGGCATCAACATGTGC
CGCCAGTGCTTCCGCACGTACGCCTACGACATCGGTTTCCACAAGTTGTC
CTAGGAGCATTCTTCGGCTAGGAATGGTGCTGGAGCAGCGGTACCAGAGC
AGTGACGAAGGGGGGTGCTGCCGGGCGGGGTTGTAGCCACCAATCCGAGG
TTCAAATACACCCATGGAAAAAAGCA
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protein sequence of jgi.p|Trimin1|350907

>Trimin1|350907|estExt_Genemark1.C_Ctg_750045 ID=Trimin1|350907|estExt_Genemark1.C_Ctg_750045|Name=jgi.p|Trimin1|350907|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=57bp
MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDI
GFHKLS*
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mRNA from alignment at Contig_75:309460..310424+

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7629 ID=mRNA_7629|Name=jgi.p|Trimin1|350907|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=965bp|location=Sequence derived from alignment at Contig_75:309460..310424+ (Tribonema minus UTEX_B_3156 )
CTGCTTTGGTGTGCTACTAGGAGGTCAAGGTGCGTATGTGGCTCAGCGCA
GGCAGCCAATACCGGTGTCACGCTCCCGCTTTGCTGGAGATCATCATGCA
AATGGTCTAGGAGGTGCTGTGTGTGACTGGCGGCCGCAGAAGTCGGCACT
TCACACCAGTTGTGATGTCAGGCCATGCAACACGCCAGGCGACGCGCTTT
GGTATTGAAATGGTGCCTCGTTGGAACGCTGCAATAACTGTATAGGGTGG
TGTGATGCCGCAAGCAGTGTTGACCGACGTTTGCGGCCGCCTTTGTGCAC
GCAGAGCCATGGGAGCCAAGGCGCTGCAGAACTCTCACCCCAAGGCGTAC
GGCAAGGGCGGCAACAAGTGCCGCGTCTGCGCCAACCAGCACGGCATCAT
CAAGAAGTACGGCATCAACATGTGCCGCCAGTGCTTCCGCACGTACGCCT
ACGACATCGGTTTCCACAAGGTGGGACAGAGGTGTAGACGAACAGCCTGC
TTTGAGAGATGCAGAGCAGCAATCTGCTTGTGTCCACGTTTCCCCTTCTG
TGTGTAACATCTTGACCTCTGCAATTATGATGGGACGATTTGCAAGAGTT
GGTGTAGTTTCACCAACTGCTGCTGCACGCCAAAAAATATCGGTCCAGTA
CTCCTCTTTGACATCATTACAGCTGGCACCACTGATGGTGAAGAGTGCCG
TTTGCTTGCAGTTGCAGCTGCGCAGGCTGCAGTTCTGGAATCCAAGCTGG
GGACACAATGCCTGCACAGCGCATCAGCAATGCTTTGGTCGGGCACTGAC
ACGCATCCGCTGTGCTTGCCTGTTGCTGCTGCAGTTGTCCTAGGAGCATT
CTTCGGCTAGGAATGGTGCTGGAGCAGCGGTACCAGAGCAGTGACGAAGG
GGGGTGCTGCCGGGCGGGGTTGTAGCCACCAATCCGAGGTTCAAATACAC
CCATGGAAAAAAGCA
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Coding sequence (CDS) from alignment at Contig_75:309460..310424+

>mRNA_7629 ID=mRNA_7629|Name=jgi.p|Trimin1|350907|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=171bp|location=Sequence derived from alignment at Contig_75:309460..310424+ (Tribonema minus UTEX_B_3156 )
ATGGGAGCCAAGGCGCTGCAGAACTCTCACCCCAAGGCGTACGGCAAGGG
CGGCAACAAGTGCCGCGTCTGCGCCAACCAGCACGGCATCATCAAGAAGT
ACGGCATCAACATGTGCCGCCAGTGCTTCCGCACGTACGCCTACGACATC
GGTTTCCACAAGTTGTCCTAG
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