Trimin1|350907|estExt_Genemark1.C_Ctg_750045 (polypeptide) Tribonema minus UTEX_B_3156

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
Namejgi.p|Trimin1|350907
Unique NameTrimin1|350907|estExt_Genemark1.C_Ctg_750045
Typepolypeptide
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Sequence length57
Homology
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A835YKD0_9STRA (Putative 40S ribosomal protein RPS29 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKD0_9STRA)

HSP 1 Score: 128 bits (322), Expect = 5.310e-38
Identity = 56/56 (100.00%), Postives = 56/56 (100.00%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
            MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS
Sbjct:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56          
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: D7FJK2_ECTSI (Similar to ribosomal protein S29 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJK2_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.920e-25
Identity = 40/56 (71.43%), Postives = 48/56 (85.71%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
            MG+KAL NSHPK++GKGG  CRVC+NQHG+I+KYG+ MCRQCFR YA +IGF K S
Sbjct:   43 MGSKALVNSHPKSFGKGGRHCRVCSNQHGLIRKYGLYMCRQCFRVYATEIGFTKFS 98          
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A061RP44_9CHLO (Small subunit ribosomal protein S29e n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RP44_9CHLO)

HSP 1 Score: 93.2 bits (230), Expect = 5.930e-24
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
            MG   + NSHPK YGKG   CRVC NQHG+I+KYG+N+CRQCFR YA DIGF K+ 
Sbjct:    1 MGHAEVWNSHPKGYGKGSRSCRVCGNQHGLIRKYGLNICRQCFREYAKDIGFQKMK 56          
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A7J7QR56_9CHLO (40S ribosomal protein S29 (Fragment) n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QR56_9CHLO)

HSP 1 Score: 92.0 bits (227), Expect = 1.620e-23
Identity = 39/54 (72.22%), Postives = 45/54 (83.33%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHK 54
            MG +A+ NSHPK YGKGG KCRVC+NQ GII+KY +N+CRQCFR YA DIGF K
Sbjct:    1 MGHEAVWNSHPKDYGKGGRKCRVCSNQGGIIRKYNLNICRQCFREYANDIGFIK 54          
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A9UDQ9_9BILA (40S ribosomal protein S29 n=1 Tax=Flustra foliacea TaxID=478208 RepID=A9UDQ9_9BILA)

HSP 1 Score: 90.9 bits (224), Expect = 4.880e-23
Identity = 37/56 (66.07%), Postives = 42/56 (75.00%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
            MG   +  SHP  YG G  KCRVC+NQHGII+KYG+NMCRQCFR YA DIGF K+ 
Sbjct:    1 MGHSNIWKSHPNKYGPGSRKCRVCSNQHGIIRKYGLNMCRQCFRQYAADIGFKKMD 56          
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: R7UVH5_CAPTE (40S ribosomal protein S29 n=1 Tax=Capitella teleta TaxID=283909 RepID=R7UVH5_CAPTE)

HSP 1 Score: 89.4 bits (220), Expect = 1.990e-22
Identity = 37/56 (66.07%), Postives = 43/56 (76.79%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
            MG   +  SHPK YG+G   CRVCAN+HG+I+KYG+NMCRQCFR YA DIGF KL 
Sbjct:    1 MGHANIWCSHPKKYGQGSRSCRVCANRHGLIRKYGLNMCRQCFRQYADDIGFKKLD 56          
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: B0Z9R4_9BILA (40S ribosomal protein S29 n=2 Tax=Lineidae TaxID=6222 RepID=B0Z9R4_9BILA)

HSP 1 Score: 89.4 bits (220), Expect = 1.990e-22
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
            MG   + NSHPK +G+G   CRVC+N+HG+I+KYG+NMCRQCFR YA DIGF KL 
Sbjct:    1 MGFANIWNSHPKKFGQGSRCCRVCSNRHGLIRKYGLNMCRQCFRQYANDIGFKKLD 56          
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A673T627_SURSU (40S ribosomal protein S29 n=5 Tax=Boreoeutheria TaxID=1437010 RepID=A0A673T627_SURSU)

HSP 1 Score: 88.6 bits (218), Expect = 4.020e-22
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
            MG + L  SHP+ +G+G   CRVC+NQHG+I+KYG+NMCRQCFR YA DIGF KL 
Sbjct:    1 MGHQQLYWSHPRKFGQGSRSCRVCSNQHGLIRKYGLNMCRQCFRQYAKDIGFIKLD 56          
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A9P0U9_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=A9P0U9_PICSI)

HSP 1 Score: 88.6 bits (218), Expect = 4.020e-22
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHK 54
            MG   + NSHPK+YG G   CRVC N HG+I+KYGIN CRQCFR+YA DIGF K
Sbjct:    1 MGHSTVYNSHPKSYGPGSRTCRVCGNSHGLIRKYGINCCRQCFRSYAKDIGFVK 54          
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Match: A0A8J5MKM9_HOMAM (40S ribosomal protein S29 n=2 Tax=cellular organisms TaxID=131567 RepID=A0A8J5MKM9_HOMAM)

HSP 1 Score: 88.2 bits (217), Expect = 5.720e-22
Identity = 35/56 (62.50%), Postives = 44/56 (78.57%), Query Frame = 0
Query:    1 MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDIGFHKLS 56
            MG +A+ NSHPK YG G  +CR C+N+HG+I+KYG+ MCRQCFR Y+ DIGF KL 
Sbjct:    1 MGFEAVWNSHPKKYGPGSRRCRSCSNRHGLIRKYGLMMCRQCFREYSADIGFKKLD 56          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|350907 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YKD0_9STRA5.310e-38100.00Putative 40S ribosomal protein RPS29 n=1 Tax=Tribo... [more]
D7FJK2_ECTSI1.920e-2571.43Similar to ribosomal protein S29 n=1 Tax=Ectocarpu... [more]
A0A061RP44_9CHLO5.930e-2466.07Small subunit ribosomal protein S29e n=1 Tax=Tetra... [more]
A0A7J7QR56_9CHLO1.620e-2372.2240S ribosomal protein S29 (Fragment) n=1 Tax=Scene... [more]
A9UDQ9_9BILA4.880e-2366.0740S ribosomal protein S29 n=1 Tax=Flustra foliacea... [more]
R7UVH5_CAPTE1.990e-2266.0740S ribosomal protein S29 n=1 Tax=Capitella teleta... [more]
B0Z9R4_9BILA1.990e-2264.2940S ribosomal protein S29 n=2 Tax=Lineidae TaxID=6... [more]
A0A673T627_SURSU4.020e-2264.2940S ribosomal protein S29 n=5 Tax=Boreoeutheria Ta... [more]
A9P0U9_PICSI4.020e-2266.67Uncharacterized protein n=1 Tax=Picea sitchensis T... [more]
A0A8J5MKM9_HOMAM5.720e-2262.5040S ribosomal protein S29 n=2 Tax=cellular organis... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001209Ribosomal protein S14PFAMPF00253Ribosomal_S14coord: 8..56
e-value: 3.3E-15
score: 55.6
IPR043140Ribosomal protein S14/S29GENE3D4.10.830.1030s Ribosomal Protein S14; Chain Ncoord: 1..56
e-value: 1.9E-27
score: 96.9
IPR03974440S ribosomal protein S29/30S ribosomal protein S14 type ZPANTHERPTHR1201040S RIBOSOMAL PROTEIN S29coord: 1..55
NoneNo IPR availablePANTHERPTHR12010:SF240S RIBOSOMAL PROTEIN S29coord: 1..55
NoneNo IPR availableSUPERFAMILY57716Glucocorticoid receptor-like (DNA-binding domain)coord: 8..49
IPR018271Ribosomal protein S14, conserved sitePROSITEPS00527RIBOSOMAL_S14coord: 22..44

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:309768..310302 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|350907mRNA_7629Tribonema minus UTEX_B_3156 mRNAContig_75 309460..310424 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>Trimin1|350907|estExt_Genemark1.C_Ctg_750045 ID=Trimin1|350907|estExt_Genemark1.C_Ctg_750045|Name=jgi.p|Trimin1|350907|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=57bp
MGAKALQNSHPKAYGKGGNKCRVCANQHGIIKKYGINMCRQCFRTYAYDI
GFHKLS*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001209Ribosomal_S14
IPR043140Ribosomal_S14/S29
IPR03974440S_S29/30S_S14z
IPR018271Ribosomal_S14_CS