mRNA_7673 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|170644
Unique NamemRNA_7673
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A835YK61_9STRA (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK61_9STRA)

HSP 1 Score: 474 bits (1221), Expect = 5.280e-169
Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1
Query:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735
            MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW
Sbjct:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 245          
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI)

HSP 1 Score: 216 bits (550), Expect = 1.680e-66
Identity = 132/280 (47.14%), Postives = 171/280 (61.07%), Query Frame = 1
Query:    1 MFVLATVRDNLK-----------------VIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNP---------------DDSYIMQVGDEIRFRVRTLDFTEVVNTANG-YQATTVSTGPQGGGGXXXXXXXXXRAKGLQEA--PPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735
            MFVLAT++D +K                 V P  F    LDVLT  ++ K++++VI NVGL ICLHS+ES+GD  VYPSDG+AHY+  FR+L+FRPFVGE+LTGK+  C++ GI VS+ FFE+ +IPK LL  PSV+ +    W+W                             DDS+ + + DE+RFRVRTL+FT+V +TA G  QATTVST     G XXXXXXXXX          PP+ R+R TS+D+T   EAP  M+IT S+NE+GLGL SWW
Sbjct:    1 MFVLATIKDTVKSPELVPGDCCLLRMTIWVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGE--WMWSXXXXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 278          
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A7S2SVH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVH5_9STRA)

HSP 1 Score: 208 bits (529), Expect = 6.000e-64
Identity = 114/249 (45.78%), Postives = 151/249 (60.64%), Query Frame = 1
Query:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVST---GPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITT--PAEAPPCMSITASINEDGLGLTSW 732
            MFVL+ +RD ++V P+ FDR  ++VL+E +D KY+NKVI N+GL IC H F+S+ +A VYPSDG AH+   FRL++FRPFVGEV  G I R +  GI VS+ FFED+ IPK LL  PS Y  R K WVWKY  +          D  +  V +++RF+V  +D+TE+ +TA G  ATT +    G   GGG             +  A P  RQRSTS+D+T     E PP M I  S+ + GLGL +W
Sbjct:    1 MFVLSVLRDVVRVAPDKFDRDLVEVLSEELDKKYANKVIPNIGLCICTHDFKSIEEAKVYPSDGGAHHSVVFRLIVFRPFVGEVAVGTIVRSTSQGIHVSLDFFEDVFIPKHLLPQPSEYDARAKLWVWKYEGSG---------DGGVFHVDEQVRFQVERVDYTELSDTARGVVATTTTVEHRGASAGGGQGS----------IPPAQPFVRQRSTSVDLTDGEEQEEPPAMMIIGSVQDHGLGLVTW 230          
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A6V1SWR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SWR7_HETAK)

HSP 1 Score: 206 bits (523), Expect = 1.190e-63
Identity = 102/181 (56.35%), Postives = 130/181 (71.82%), Query Frame = 1
Query:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVST 543
            MFVLA V+D++K+ P +FD+  +  LTE +D KY+NKVI++VGL ICL  FE +GDA +YP DGSAHY+A FRLL+FRPFVGE++TG+I   S+ GI VS+GF +DI +P  LL  PS +    +AW WKY D D +A D       +M+VGD  RFRVRTLDFT+V  TA G QA TVST
Sbjct:    1 MFVLAVVKDSVKIHPSAFDKNQIQALTEEIDHKYANKVILDVGLCICLFDFEHIGDAYIYPLDGSAHYKATFRLLVFRPFVGEIITGRISSQSKEGIKVSLGFTDDIIVPSYLLQAPSQFDPEERAWTWKYQDEDGEAQDM------LMEVGDACRFRVRTLDFTQVKATAKGLQAHTVST 175          
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: K3WAI2_GLOUD (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WAI2_GLOUD)

HSP 1 Score: 194 bits (492), Expect = 1.660e-58
Identity = 104/245 (42.45%), Postives = 142/245 (57.96%), Query Frame = 1
Query:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735
            MFVL  + D + V PE FD     VL E +D KY+NKVI +VGL I ++ F  +GDA V+PSDG++H + EFR+++FRPFVGEVL G+I  C+E  I VS+ F +DI IP   L  PS +    + WVWKYS+           + + M + +EIRFRV  ++FT V  TANG QATT                     K   E   + R+RS+S+D++     P  + I  +I+EDGLGL+SWW
Sbjct:    1 MFVLTRLSDVIPVNPELFDADYTKVLVEEIDRKYANKVIADVGLCITIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYSEGQ---------EKFYMDMHEEIRFRVTNINFTRVTKTANGIQATTTEASD----------------KAASEGQSLARRRSSSVDLSDNDPTPSAIHILGTIDEDGLGLSSWW 220          
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A8K1CBB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBB5_PYTOL)

HSP 1 Score: 187 bits (474), Expect = 1.040e-55
Identity = 99/245 (40.41%), Postives = 145/245 (59.18%), Query Frame = 1
Query:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735
            MFVL  + D + V P+ F+     VL E +D KY+NKVI +VGL I ++ F  +GDA V+PSDG++H + EFR+++FRPFVGEVL G+I  C+E  I VS+ F +DI IP   +  PS +    + WVWKYS+           + + M + +EIRFRV +++FT V  TA+G QATT     +              A  ++++  + R RS S+D++     P  + I  +I+EDGLGL+SWW
Sbjct:    1 MFVLTRISDVIPVAPDLFEEDYQKVLVEEIDRKYANKVIADVGLCISIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCNEEHIRVSMDFVQDIIIPSYAMQTPSYFDTTERLWVWKYSEGQ---------EKFFMDLHEEIRFRVTSINFTRVTKTAHGIQATTTEASDK-------TTDAAPNAGDMRQS--LARGRSASVDLSDTDPTPSAIHILGTIDEDGLGLSSWW 227          
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A4D9CXH6_9STRA (RNA_pol_Rbc25 domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXH6_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.240e-55
Identity = 108/249 (43.37%), Postives = 151/249 (60.64%), Query Frame = 1
Query:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAP----PCMSITASINEDGLGLTSWW 735
            MF LA +RD +KV P SF+R  ++VLTE VD KY+N+++++VGL +CL+ F  +GDA +YPSDG+AH+   FRL++FRPF+GEVL G++ +CSE GI +S+GFF+DI +P  LL  PS +  R   WVW YS  +       P   Y M+V + IRFRVR+++FT    + +G               XXXXXXX    K   E   +G+ R    D  T  E+     P M +  + NEDGLG+ +WW
Sbjct:    1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMDVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPG----EPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGXXXXXXXXXXXXXX-XXXXXXXPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWW 244          
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A024URS8_9STRA (DNA-directed RNA polymerase n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024URS8_9STRA)

HSP 1 Score: 182 bits (462), Expect = 6.150e-54
Identity = 102/247 (41.30%), Postives = 142/247 (57.49%), Query Frame = 1
Query:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATT--VSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735
            MFVL  V D ++V PE F      VL E +D KY+NKVI +VGL I  + F  +GDA V+PSDG++H +  FR+++FRPF+GE+L GKI  C+E  I VS+ F +DI IP   + +PS + K  + W WK+   + D       D Y M + +E+RFRV  ++FT V+ TANG QA T    T P                    E P   R+RS+S+D++     P  + I  +I+EDGLGL+SWW
Sbjct:    1 MFVLCRVADVIQVAPELFSADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYVHPSDGTSHTDVIFRMVVFRPFIGEILKGKIINCTEEHIRVSMEFMQDIIIPSYAMQNPSFFDKTERLWEWKFPGREDDQ------DPYYMYLNEEVRFRVTNINFTRVLKTANGMQAVTEAADTKPD-----------------KSENPT--RRRSSSVDLSDTDPKPAALQIIGTIDEDGLGLSSWW 222          
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC)

HSP 1 Score: 182 bits (461), Expect = 7.480e-54
Identity = 97/245 (39.59%), Postives = 137/245 (55.92%), Query Frame = 1
Query:    1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735
            MFVL  + D +++ PE F      VLTE +D KY+NKVI +VGL I L+ F  +GDA ++PSDG++H E  FR+++F+PF+GEVL GKI  C+E  I VS+ F +DI IP   +  PS + K  + W WK+   +      +  D Y M + +E+RFRV  ++FT V  TA G QAT                                R+RS+S+D++     P  M I  +I+EDGLGL+SWW
Sbjct:    1 MFVLCRIADVIQIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSHTEVVFRMVVFQPFIGEVLKGKIISCTEEHIRVSMDFVQDIIIPSYAMQTPSFFDKNERLWEWKFPGKE------DEQDPYYMYLHEEVRFRVTNINFTRVTKTAKGIQATVTEAADSAS----------------------SRRRSSSVDLSEHDPKPSAMQIIGTIDEDGLGLSSWW 217          
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A7S2XZU7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZU7_9STRA)

HSP 1 Score: 177 bits (450), Expect = 1.310e-52
Identity = 100/200 (50.00%), Postives = 123/200 (61.50%), Query Frame = 1
Query:  151 FESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEA-----PPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735
            FES+GDA +YP DGSAHY+  FRLL+FRPFVGE++ GKI   S  G+ V++GF ED+ IP  LL  PS +    + WVWKYS+   D+ DF      +M  G+EIRFRVR+L+FT+V  TA G  ATTVST      G          A G Q       P   R+RS+S+D+  P EAP  M I  SINEDGLGL SWW
Sbjct:    2 FESIGDAYIYPLDGSAHYKVTFRLLVFRPFVGELIIGKISSQSAEGLKVTLGFTEDVFIPSYLLQAPSEFDANEQVWVWKYSE---DSEDF------VMDTGEEIRFRVRSLNFTQVQATAKGLLATTVSTSS----GTTAEKQQSQPAGGSQHTQKASEPMRLRRRSSSVDLADPQEAPSAMQILGSINEDGLGLLSWW 188          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835YK61_9STRA5.280e-169100.00RNA polymerase III subunit Rpc25-domain-containing... [more]
D7FSQ2_ECTSI1.680e-6647.14RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ec... [more]
A0A7S2SVH5_9STRA6.000e-6445.78Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A6V1SWR7_HETAK1.190e-6356.35Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
K3WAI2_GLOUD1.660e-5842.45Uncharacterized protein n=21 Tax=Oomycota TaxID=47... [more]
A0A8K1CBB5_PYTOL1.040e-5540.41Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A4D9CXH6_9STRA1.240e-5543.37RNA_pol_Rbc25 domain-containing protein n=4 Tax=Mo... [more]
A0A024URS8_9STRA6.150e-5441.30DNA-directed RNA polymerase n=4 Tax=Aphanomyces Ta... [more]
A0A067CHA1_SAPPC7.480e-5439.59Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]
A0A7S2XZU7_9STRA1.310e-5250.00Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_75contigContig_75:603793..605933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|170644|e_gw1.75.186.1
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021
KEGG rclassRC00050,RC00087,RC00088,RC00099,RC00116,RC00649,RC01715,RC01734,RC02273,RC02795
KEGG ReactionR00435,R00441,R00442,R00443,R00623,R00754,R02124,R04880,R05233,R05234,R06917,R06927,R06983,R07105,R08281,R08306,R08310
KEGG ModuleM00181
KEGG Pathwayko00010,ko00071,ko00230,ko00240,ko00350,ko00625,ko00626,ko00680,ko00830,ko00980,ko00982,ko01100,ko01110,ko01120,ko01130,ko01200,ko01220,ko03020,ko04623,ko05169,ko05204,map00010,map00071,map00230,map00240,map00350,map00625,map00626,map00680,map00830,map00980,map00982,map01100,map01110,map01120,map01130,map01200,map01220,map03020,map04623,map05169,map05204
KEGG koko:K00121,ko:K03022
EC1.1.1.1,1.1.1.284
GOsGO:0000228,GO:0000428,GO:0000785,GO:0000790,GO:0003674,GO:0003824,GO:0003899,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005666,GO:0005694,GO:0006139,GO:0006351,GO:0006352,GO:0006383,GO:0006384,GO:0006399,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009304,GO:0009987,GO:0010467,GO:0016070,GO:0016740,GO:0016772,GO:0016779,GO:0018130,GO:0019438,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0034062,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0042797,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0046483,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0097747,GO:0098781,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Preferred nameRPC25
Descriptiontranscription initiation from RNA polymerase III promoter
COG categoryK
Max annot lvl2759|Eukaryota
EggNOG OGsCOG1095@1|root,KOG3297@2759|Eukaryota
Evalue2.75e-67
Seed ortholog2880.D7FSQ2
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRNA polymerase Rpb7, N-terminal
Ec32 orthologEc-03_002970.1
TranscriptId170966
TrackFilteredModels1
ProteinId170644
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170644gene_7673Tribonema minus UTEX_B_3156 geneContig_75 603793..605933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|170644Trimin1|170644|e_gw1.75.186.1Tribonema minus UTEX_B_3156 polypeptideContig_75 603793..605933 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_7673_3exon_7673_3Tribonema minus UTEX_B_3156 exonContig_75 603793..604113 -
exon_7673_2exon_7673_2Tribonema minus UTEX_B_3156 exonContig_75 604270..604382 -
exon_7673_1exon_7673_1Tribonema minus UTEX_B_3156 exonContig_75 605630..605933 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_7673CDS_7673Tribonema minus UTEX_B_3156 CDSContig_75 605630..605933 -


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_7673 ID=mRNA_7673|Name=jgi.p|Trimin1|170644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=738bp|location=Sequence derived from alignment at Contig_75:603793..605933- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGTTCGTGCTGGCCACTGTGAGGGACAACCTCAAAGTGATCCCAGAGTC
CTTCGACAGGCCCACGCTTGATGTCCTGACGGAGGTGGTGGACATGAAGT
ACTCCAACAAAGTCATCATCAACGTGGGCCTGGCGATCTGCTTGCACAGT
TTTGAGAGCGTTGGCGACGCGCTTGTGTACCCCAGCGACGGGAGTGCTCA
CTACGAGGCGGAGTTTAGGCTGCTGATGTTCAGGCCATTCGTGGGGGAGG
TGCTGACGGGCAAGATCGGCAGGTGCAGTGAAACCGGCATCACAGTGTCC
ATTGGCTTCTTCGAAGACATCACCATCCCCAAGCCGCTGCTGTGCCACCC
CAGCGTCTACCACAAGCGCCACAAAGCGTGGGTCTGGAAGTATTCGGACG
CGGACGCAGACGCAGCCGACTTCAACCCCGACGACTCGTACATCATGCAG
GTGGGCGACGAGATCCGCTTCCGCGTGCGCACGCTCGACTTCACGGAGGT
CGTCAACACGGCCAACGGGTACCAGGCGACGACGGTGTCGACGGGGCCAC
AGGGGGGGGGCGGGGAGGGGGGGGGGGGCGCAGGGGGGGCGCGCGCGAAG
GGCCTGCAGGAGGCGCCGCCGATGGGGCGGCAGCGCTCCACGAGCATCGA
CATCACGACGCCGGCGGAGGCGCCGCCGTGCATGTCCATCACCGCCAGCA
TCAACGAGGACGGGCTGGGGCTGACGAGCTGGTGGTAG
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protein sequence of jgi.p|Trimin1|170644

>Trimin1|170644|e_gw1.75.186.1 ID=Trimin1|170644|e_gw1.75.186.1|Name=jgi.p|Trimin1|170644|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=246bp
MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHS
FESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVS
IGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQ
VGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGEGGGGAGGARAK
GLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW*
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mRNA from alignment at Contig_75:603793..605933-

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_7673 ID=mRNA_7673|Name=jgi.p|Trimin1|170644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2141bp|location=Sequence derived from alignment at Contig_75:603793..605933- (Tribonema minus UTEX_B_3156 )
ATGTTCGTGCTGGCCACTGTGAGGGACAACCTCAAAGTGATCCCAGAGTC CTTCGACAGGCCCACGCTTGATGTCCTGACGGAGGTGGTGGACATGAAGT ACTCCAACAAAGTCATCATCAACGTGGGCCTGGCGATCTGCTTGCACAGT TTTGAGAGCGTTGGCGACGCGCTTGTGTACCCCAGCGACGGGAGTGCTCA CTACGAGGCGGAGTTTAGGCTGCTGATGTTCAGGCCATTCGTGGGGGAGG TGCTGACGGGCAAGATCGGCAGGTGCAGTGAAACCGGCATCACAGTGTCC ATTGGTGAGTGACCAGCAGCATCGAAAACCGGTGCTTACTAGGCAGCCAA CTACAAGGCAGTTAGTGTTCACACTCACATGAAACATCACTTGTCACGTT GACGAGCAGTGCTAGTGAGCCTGGGGCAATCCTGTTTTTTCATCACAGTG GTCATCTCCAGAATGCCCTGAGCTGCAACCGCATGCGGCAACTGTCAGTG AGACACTGTCTGAGCCTCATCATGAATTGTTCCTGCAACAGTGAGTATGG ACGGGCATTTCACTGCCACCACCTTTGCTGCTGTGTTGCTGAAGAGCTCA CGCAGCTTGTCCATATTAGCCCATGCACCCTCGAAAACTTGTGCCTTTGC TTCCATGGTTGGCAGCAAGCCCTCGTCAACATCAAGCTTTGCTCAAGCTT TGCTGAGCACCTTCTGAAGGTCGCATGCATGCACTTGCACACATTGGCAG CGAGGTTGCGCCAGACTGCAGCTTGCCGCAGATGTCAGCGACTTTAGCAT GCACGCTGCATCACGCCCAGCAGCTGCGTGTGCTGAGCAGCTGCGCTTCC GCATTCTTACACCCAATGCAAAATTTCAAGTTGTGCTCTGTGCCACCCCA TATGCGCCCTACATGGCAGCTACGACGAGTGCAGCGCAAGTGCAGGCCGC ACTCGTGTGCACGAGCACCGGCACAAGTAGTTTTTATTAATTCTCGCTCA GGGCGCGAAAAAGCCCAGATGATTGGCATCTAGCTGTAAGGAATCTACAT GTCGTATGACAGTCTGAAAGTGTCGCAACGACAACCACTCAAACGCCGCC GCCGCCAAATGGCATCTCGGGGTCCTCCCCTACGTCCTCCTCCATGTGCC CCCCCCCCCCTGGATTCTGCCATGTGTGTCATGACACGGCCAGAGTACGC TATGTGGACACCATGTGGCACAAGTACCAGCGCGATTGCTCATCATGCAT GCACTTGTTCATCAAGGCATAGGTGTCTTTCCGCATGGTTGTACCGACGA CCACCGCAGCATTCTTGTGCCCTGAGCAAGGATCATCTCCGCACACCAGC TTGCACCGCACAGCATCCTGTTTGTCCGAAACGCCTCGCTTGCCCTCTCG GAGCCCACACCACGCCCGCCCCCTCGCGTTCTGTCGGCCACAACAGGCTT CTTCGAAGACATCACCATCCCCAAGCCGCGCTGTGCCACCCCGTGCGCCC CCTCGAAGCTCACTCTACGTCCACCCCTTTGCCTTTCATTCACTCCAACA GGCTTCTTCGAAGACATCACCATCCCCAAGCCGCTGCTGTGCCACCCCAG CGTCTACCACAAGCGCCACAAAGCGTGGGTCTGGAAGTATTCGGACGCGG ACGCAGACGCAGCCGTCGCGCCCAACGCCGCCGCCGCCGCCGCGGCAGCA GCGGCGGCGGCAGCGGCGGCGGCAGCGGCGGCGGCGGGCGGCGCCGTGGC CGCGCCGCCGCCGACCATCGCCGTGAACGCGCTGACGGGGCTGAGCGCTG ACGCGGACGACGCCGACGAGGACTTCAACCCCGACGACTCGTACATCATG CAGGTGGGCGACGAGATCCGCTTCCGCGTGCGCACGCTCGACTTCACGGA GGTCGTCAACACGGCCAACGGGTACCAGGCGACGACGGTGTCGACGGGGC CACAGGGGGGGGGCGGGGAGGGGGGGGGGGGCGCAGGGGGGGCGCGCGCG AAGGGCCTGCAGGAGGCGCCGCCGATGGGGCGGCAGCGCTCCACGAGCAT CGACATCACGACGCCGGCGGAGGCGCCGCCGTGCATGTCCATCACCGCCA GCATCAACGAGGACGGGCTGGGGCTGACGAGCTGGTGGTAG
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Coding sequence (CDS) from alignment at Contig_75:603793..605933-

>mRNA_7673 ID=mRNA_7673|Name=jgi.p|Trimin1|170644|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=738bp|location=Sequence derived from alignment at Contig_75:603793..605933- (Tribonema minus UTEX_B_3156 )
ATGTTCGTGCTGGCCACTGTGAGGGACAACCTCAAAGTGATCCCAGAGTC
CTTCGACAGGCCCACGCTTGATGTCCTGACGGAGGTGGTGGACATGAAGT
ACTCCAACAAAGTCATCATCAACGTGGGCCTGGCGATCTGCTTGCACAGT
TTTGAGAGCGTTGGCGACGCGCTTGTGTACCCCAGCGACGGGAGTGCTCA
CTACGAGGCGGAGTTTAGGCTGCTGATGTTCAGGCCATTCGTGGGGGAGG
TGCTGACGGGCAAGATCGGCAGGTGCAGTGAAACCGGCATCACAGTGTCC
ATTGGCTTCTTCGAAGACATCACCATCCCCAAGCCGCTGCTGTGCCACCC
CAGCGTCTACCACAAGCGCCACAAAGCGTGGGTCTGGAAGTATTCGGACG
CGGACGCAGACGCAGCCGACTTCAACCCCGACGACTCGTACATCATGCAG
GTGGGCGACGAGATCCGCTTCCGCGTGCGCACGCTCGACTTCACGGAGGT
CGTCAACACGGCCAACGGGTACCAGGCGACGACGGTGTCGACGGGGCCAC
AGGGGGGGGGCGGGGAGGGGGGGGGGGGCGCAGGGGGGGCGCGCGCGAAG
GGCCTGCAGGAGGCGCCGCCGATGGGGCGGCAGCGCTCCACGAGCATCGA
CATCACGACGCCGGCGGAGGCGCCGCCGTGCATGTCCATCACCGCCAGCA
TCAACGAGGACGGGCTGGGGCTGACGAGCTGGTGGTAG
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