mRNA_7673 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A835YK61_9STRA (RNA polymerase III subunit Rpc25-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YK61_9STRA) HSP 1 Score: 474 bits (1221), Expect = 5.280e-169 Identity = 245/245 (100.00%), Postives = 245/245 (100.00%), Query Frame = 1 Query: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW Sbjct: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 245
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: D7FSQ2_ECTSI (RNA_pol_Rbc25 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSQ2_ECTSI) HSP 1 Score: 216 bits (550), Expect = 1.680e-66 Identity = 132/280 (47.14%), Postives = 171/280 (61.07%), Query Frame = 1 Query: 1 MFVLATVRDNLK-----------------VIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNP---------------DDSYIMQVGDEIRFRVRTLDFTEVVNTANG-YQATTVSTGPQGGGGXXXXXXXXXRAKGLQEA--PPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735 MFVLAT++D +K V P F LDVLT ++ K++++VI NVGL ICLHS+ES+GD VYPSDG+AHY+ FR+L+FRPFVGE+LTGK+ C++ GI VS+ FFE+ +IPK LL PSV+ + W+W DDS+ + + DE+RFRVRTL+FT+V +TA G QATTVST G XXXXXXXXX PP+ R+R TS+D+T EAP M+IT S+NE+GLGL SWW Sbjct: 1 MFVLATIKDTVKSPELVPGDCCLLRMTIWVAPSKFSGDALDVLTAQIEAKFADRVIANVGLCICLHSYESIGDPYVYPSDGAAHYKVRFRMLVFRPFVGEILTGKVSSCTKQGIKVSLDFFENASIPKDLLQSPSVFARGE--WMWSXXXXXXXXXXXXXXXXXXXXXXXXXXENDDSFSLTLHDEVRFRVRTLEFTQVTSTATGSLQATTVSTARGAAGXXXXXXXXXXXXXXXXNGGQPPVVRERGTSVDLTDVEEAPSAMTITGSMNEEGLGLLSWW 278
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A7S2SVH5_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVH5_9STRA) HSP 1 Score: 208 bits (529), Expect = 6.000e-64 Identity = 114/249 (45.78%), Postives = 151/249 (60.64%), Query Frame = 1 Query: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVST---GPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITT--PAEAPPCMSITASINEDGLGLTSW 732 MFVL+ +RD ++V P+ FDR ++VL+E +D KY+NKVI N+GL IC H F+S+ +A VYPSDG AH+ FRL++FRPFVGEV G I R + GI VS+ FFED+ IPK LL PS Y R K WVWKY + D + V +++RF+V +D+TE+ +TA G ATT + G GGG + A P RQRSTS+D+T E PP M I S+ + GLGL +W Sbjct: 1 MFVLSVLRDVVRVAPDKFDRDLVEVLSEELDKKYANKVIPNIGLCICTHDFKSIEEAKVYPSDGGAHHSVVFRLIVFRPFVGEVAVGTIVRSTSQGIHVSLDFFEDVFIPKHLLPQPSEYDARAKLWVWKYEGSG---------DGGVFHVDEQVRFQVERVDYTELSDTARGVVATTTTVEHRGASAGGGQGS----------IPPAQPFVRQRSTSVDLTDGEEQEEPPAMMIIGSVQDHGLGLVTW 230
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A6V1SWR7_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1SWR7_HETAK) HSP 1 Score: 206 bits (523), Expect = 1.190e-63 Identity = 102/181 (56.35%), Postives = 130/181 (71.82%), Query Frame = 1 Query: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVST 543 MFVLA V+D++K+ P +FD+ + LTE +D KY+NKVI++VGL ICL FE +GDA +YP DGSAHY+A FRLL+FRPFVGE++TG+I S+ GI VS+GF +DI +P LL PS + +AW WKY D D +A D +M+VGD RFRVRTLDFT+V TA G QA TVST Sbjct: 1 MFVLAVVKDSVKIHPSAFDKNQIQALTEEIDHKYANKVILDVGLCICLFDFEHIGDAYIYPLDGSAHYKATFRLLVFRPFVGEIITGRISSQSKEGIKVSLGFTDDIIVPSYLLQAPSQFDPEERAWTWKYQDEDGEAQDM------LMEVGDACRFRVRTLDFTQVKATAKGLQAHTVST 175
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: K3WAI2_GLOUD (Uncharacterized protein n=21 Tax=Oomycota TaxID=4762 RepID=K3WAI2_GLOUD) HSP 1 Score: 194 bits (492), Expect = 1.660e-58 Identity = 104/245 (42.45%), Postives = 142/245 (57.96%), Query Frame = 1 Query: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735 MFVL + D + V PE FD VL E +D KY+NKVI +VGL I ++ F +GDA V+PSDG++H + EFR+++FRPFVGEVL G+I C+E I VS+ F +DI IP L PS + + WVWKYS+ + + M + +EIRFRV ++FT V TANG QATT K E + R+RS+S+D++ P + I +I+EDGLGL+SWW Sbjct: 1 MFVLTRLSDVIPVNPELFDADYTKVLVEEIDRKYANKVIADVGLCITIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCTEEHIRVSMDFVQDIIIPSYALQTPSYFDTAERLWVWKYSEGQ---------EKFYMDMHEEIRFRVTNINFTRVTKTANGIQATTTEASD----------------KAASEGQSLARRRSSSVDLSDNDPTPSAIHILGTIDEDGLGLSSWW 220
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A8K1CBB5_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBB5_PYTOL) HSP 1 Score: 187 bits (474), Expect = 1.040e-55 Identity = 99/245 (40.41%), Postives = 145/245 (59.18%), Query Frame = 1 Query: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735 MFVL + D + V P+ F+ VL E +D KY+NKVI +VGL I ++ F +GDA V+PSDG++H + EFR+++FRPFVGEVL G+I C+E I VS+ F +DI IP + PS + + WVWKYS+ + + M + +EIRFRV +++FT V TA+G QATT + A ++++ + R RS S+D++ P + I +I+EDGLGL+SWW Sbjct: 1 MFVLTRISDVIPVAPDLFEEDYQKVLVEEIDRKYANKVIADVGLCISIYDFVHIGDAFVHPSDGTSHSQVEFRMVVFRPFVGEVLKGRIVSCNEEHIRVSMDFVQDIIIPSYAMQTPSYFDTTERLWVWKYSEGQ---------EKFFMDLHEEIRFRVTSINFTRVTKTAHGIQATTTEASDK-------TTDAAPNAGDMRQS--LARGRSASVDLSDTDPTPSAIHILGTIDEDGLGLSSWW 227
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A4D9CXH6_9STRA (RNA_pol_Rbc25 domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CXH6_9STRA) HSP 1 Score: 187 bits (475), Expect = 1.240e-55 Identity = 108/249 (43.37%), Postives = 151/249 (60.64%), Query Frame = 1 Query: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAP----PCMSITASINEDGLGLTSWW 735 MF LA +RD +KV P SF+R ++VLTE VD KY+N+++++VGL +CL+ F +GDA +YPSDG+AH+ FRL++FRPF+GEVL G++ +CSE GI +S+GFF+DI +P LL PS + R WVW YS + P Y M+V + IRFRVR+++FT + +G XXXXXXX K E +G+ R D T E+ P M + + NEDGLG+ +WW Sbjct: 1 MFQLAVIRDTIKVPPASFNRNQIEVLTEEVDRKYANRIVMDVGLGVCLYDFVDIGDAYLYPSDGAAHHRVTFRLMVFRPFIGEVLVGRVKQCSENGIKISLGFFDDIFVPSYLLQTPSEFDPRENVWVWSYSSDEPG----EPAVRYPMEVDEFIRFRVRSVNFTHTKYSGSGXXXXXXXXXXXXXX-XXXXXXXPVNPKVEVEGGGLGQVRRPRSDTLTGDESVGGPLPPMQLLGTTNEDGLGMLAWW 244
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A024URS8_9STRA (DNA-directed RNA polymerase n=4 Tax=Aphanomyces TaxID=100860 RepID=A0A024URS8_9STRA) HSP 1 Score: 182 bits (462), Expect = 6.150e-54 Identity = 102/247 (41.30%), Postives = 142/247 (57.49%), Query Frame = 1 Query: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATT--VSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735 MFVL V D ++V PE F VL E +D KY+NKVI +VGL I + F +GDA V+PSDG++H + FR+++FRPF+GE+L GKI C+E I VS+ F +DI IP + +PS + K + W WK+ + D D Y M + +E+RFRV ++FT V+ TANG QA T T P E P R+RS+S+D++ P + I +I+EDGLGL+SWW Sbjct: 1 MFVLCRVADVIQVAPELFSADYSSVLIEEIDRKYANKVIADVGLCITHYDFIEIGDAYVHPSDGTSHTDVIFRMVVFRPFIGEILKGKIINCTEEHIRVSMEFMQDIIIPSYAMQNPSFFDKTERLWEWKFPGREDDQ------DPYYMYLNEEVRFRVTNINFTRVLKTANGMQAVTEAADTKPD-----------------KSENPT--RRRSSSVDLSDTDPKPAALQIIGTIDEDGLGLSSWW 222
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A067CHA1_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067CHA1_SAPPC) HSP 1 Score: 182 bits (461), Expect = 7.480e-54 Identity = 97/245 (39.59%), Postives = 137/245 (55.92%), Query Frame = 1 Query: 1 MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSFESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEAPPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735 MFVL + D +++ PE F VLTE +D KY+NKVI +VGL I L+ F +GDA ++PSDG++H E FR+++F+PF+GEVL GKI C+E I VS+ F +DI IP + PS + K + W WK+ + + D Y M + +E+RFRV ++FT V TA G QAT R+RS+S+D++ P M I +I+EDGLGL+SWW Sbjct: 1 MFVLCRIADVIQIAPELFGTDYSSVLTEEIDRKYANKVIADVGLCITLYDFIEIGDAYIHPSDGTSHTEVVFRMVVFQPFIGEVLKGKIISCTEEHIRVSMDFVQDIIIPSYAMQTPSFFDKNERLWEWKFPGKE------DEQDPYYMYLHEEVRFRVTNINFTRVTKTAKGIQATVTEAADSAS----------------------SRRRSSSVDLSEHDPKPSAMQIIGTIDEDGLGLSSWW 217
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Match: A0A7S2XZU7_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZU7_9STRA) HSP 1 Score: 177 bits (450), Expect = 1.310e-52 Identity = 100/200 (50.00%), Postives = 123/200 (61.50%), Query Frame = 1 Query: 151 FESVGDALVYPSDGSAHYEAEFRLLMFRPFVGEVLTGKIGRCSETGITVSIGFFEDITIPKPLLCHPSVYHKRHKAWVWKYSDADADAADFNPDDSYIMQVGDEIRFRVRTLDFTEVVNTANGYQATTVSTGPQGGGGXXXXXXXXXRAKGLQEA-----PPMGRQRSTSIDITTPAEAPPCMSITASINEDGLGLTSWW 735 FES+GDA +YP DGSAHY+ FRLL+FRPFVGE++ GKI S G+ V++GF ED+ IP LL PS + + WVWKYS+ D+ DF +M G+EIRFRVR+L+FT+V TA G ATTVST G A G Q P R+RS+S+D+ P EAP M I SINEDGLGL SWW Sbjct: 2 FESIGDAYIYPLDGSAHYKVTFRLLVFRPFVGELIIGKISSQSAEGLKVTLGFTEDVFIPSYLLQAPSEFDANEQVWVWKYSE---DSEDF------VMDTGEEIRFRVRSLNFTQVQATAKGLLATTVSTSS----GTTAEKQQSQPAGGSQHTQKASEPMRLRRRSSSVDLADPQEAPSAMQILGSINEDGLGLLSWW 188 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|170644 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_7673 ID=mRNA_7673|Name=jgi.p|Trimin1|170644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=738bp|location=Sequence derived from alignment at Contig_75:603793..605933- (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGTTCGTGCTGGCCACTGTGAGGGACAACCTCAAAGTGATCCCAGAGTCback to top protein sequence of jgi.p|Trimin1|170644 >Trimin1|170644|e_gw1.75.186.1 ID=Trimin1|170644|e_gw1.75.186.1|Name=jgi.p|Trimin1|170644|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=246bp MFVLATVRDNLKVIPESFDRPTLDVLTEVVDMKYSNKVIINVGLAICLHSback to top mRNA from alignment at Contig_75:603793..605933- Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_7673 ID=mRNA_7673|Name=jgi.p|Trimin1|170644|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2141bp|location=Sequence derived from alignment at Contig_75:603793..605933- (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_75:603793..605933- >mRNA_7673 ID=mRNA_7673|Name=jgi.p|Trimin1|170644|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=738bp|location=Sequence derived from alignment at Contig_75:603793..605933- (Tribonema minus UTEX_B_3156 )back to top |